TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000106_2.0 # Protein # Selenoprotein T (SelT) # Human
(Homo sapiens)
         (195 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472269549|gb|KB715140.1| Leptonychotes weddellii isolate WS11...    63   8e-09
gi|472265014|gb|KB719643.1| Leptonychotes weddellii isolate WS11...    36   1.4  
gi|472268456|gb|KB716201.1| Leptonychotes weddellii isolate WS11...    34   3.9  
gi|472269088|gb|KB715569.1| Leptonychotes weddellii isolate WS11...    33   6.7  
gi|472269974|gb|KB714715.1| Leptonychotes weddellii isolate WS11...    33   8.8  

>gi|472269549|gb|KB715140.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00434, whole genome
              shotgun sequence
          Length = 1368932

 Score = 63.2 bits (152), Expect = 8e-09
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = +1

Query: 126    VYACMMVFFLSNMIENQCMSTGAFEITLN 154
              VYACMMVFFLSNMIENQCMSTGAFEITLN
Sbjct: 975928 VYACMMVFFLSNMIENQCMSTGAFEITLN 976014


>gi|472265014|gb|KB719643.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold04937, whole genome
             shotgun sequence
          Length = 101269

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -2

Query: 146   TGAFEITLNDVPVWSKLESGHLPS 169
             TG F+IT ++VP+W  L S HLPS
Sbjct: 95664 TGPFQITQDNVPIWRSLTSSHLPS 95593


>gi|472268456|gb|KB716201.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold01495, whole genome
              shotgun sequence
          Length = 756842

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -2

Query: 99     LIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST--GAFEITLNDV 156
              ++++G+      G  A   W WG++   + C+ +FF     + QC  T   + EI +N V
Sbjct: 642136 MVLIGELKTEAVGAVASGEWSWGEKLSFFICLSLFFK----KIQCSGTFLKSLEIFVNRV 641969

Query: 157    PVW 159
              P W
Sbjct: 641968 PGW 641960


>gi|472269088|gb|KB715569.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00863, whole genome
              shotgun sequence
          Length = 949633

 Score = 33.5 bits (75), Expect = 6.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 57     EYMRVISQRYPDIRIEGENYLPQPIYRHIAS 87
              EY+ ++ + YPD R++G  +LP P+Y  + S
Sbjct: 808480 EYLIIMFEEYPDYRLKGLRFLPLPLYPRLYS 808388


>gi|472269974|gb|KB714715.1| Leptonychotes weddellii isolate WS11-02
               unplaced genomic scaffold scaffold00009, whole genome
               shotgun sequence
          Length = 6678008

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 141     NQCMSTGAFEITLNDVP-VWSKLESGHLPSMQQLVQILDNEMKLNVHM 187
               N  +  G F  T+   P  WSKLE G +PS+   V IL  +  +N+H+
Sbjct: 1889614 NSSVIRGLFLRTITSHP*DWSKLEKGKMPSVGSDVGILKTKQSINLHI 1889471


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.325    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 697,971,860
Number of Sequences: 16710
Number of extensions: 10271134
Number of successful extensions: 54535
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 357
Number of HSP's that attempted gapping in prelim test: 50360
Number of HSP's gapped (non-prelim): 11650
length of query: 195
length of database: 1,052,295,386
effective HSP length: 125
effective length of query: 70
effective length of database: 1,050,206,636
effective search space: 73514464520
effective search space used: 73514464520
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 74 (33.1 bits)