Command line: [exonerate -m p2g --showtargetgff -q ./SelS.fa -t SelS.carpeta/genomic.fa]
Hostname: [ws101087]
C4 Alignment:
------------
Query: SPP00000100_2.0 # Protein # Selenoprotein S (SelS) # Walrus (Odobenus rosmarus)
Target: gi|472268615|gb|KB716042.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01336, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 919
Query range: 0 -> 188
Target range: 414768 -> 400069
1 : MetGluArgAspGlyGlnLeuLeuSerAlaArgProAlaLeuGluThrGluGlyPheA : 20
||||||||||||||||||||||||||||||||||||||||||||||||||||||...|
MetGluArgAspGlyGlnLeuLeuSerAlaArgProAlaLeuGluThrGluGlyLeuA
414768 : ATGGAGCGGGACGGGCAGCTGCTGTCCGCGCGGCCGGCCCTGGAGACAGAGGGGTTGC : 414711
21 : rgTyrLeuHisValThr{V} >>>> Target Intron 1 >>>> {al}GlySe : 28
|||||||||||||||||{|} 690 bp {||}|||||
rgTyrLeuHisValThr{V}++ ++{al}GlySe
414710 : GCTACCTGCACGTCACG{G}gt.........................ag{TG}GGCTC : 413997
29 : rLeuLeuAlaThrTyrGlyTrpTyrIleValPheSerCysIleLeuLeuTyrValVal : 47
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rLeuLeuAlaThrTyrGlyTrpTyrIleValPheSerCysIleLeuLeuTyrValVal
413996 : CCTGCTAGCCACTTACGGCTGGTACATCGTCTTCAGCTGCATCCTTCTCTACGTGGTG : 413940
48 : PheGlnLysLeuSerThrArgLeuArgAlaLeuArgGlnArgGlnLeuAspArgAlaA : 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PheGlnLysLeuSerThrArgLeuArgAlaLeuArgGlnArgGlnLeuAspArgAlaA
413939 : TTTCAGAAGCTTTCCACCCGGCTGAGGGCCTTGCGACAGAGGCAGCTGGACCGAGCTG : 413880
68 : laAlaAlaVal{G} >>>> Target Intron 2 >>>> {lu}ProAspValVa : 75
|||||||||||{|} 7676 bp {||}|||||||||||
laAlaAlaVal{G}++ ++{lu}ProAspValVa
413879 : CGGCTGCCGTG{G}gt.........................ag{AA}CCCGATGTTGT : 406180
76 : lValLysArgGlnGluAlaLeuAlaAlaAlaArgLeuLysMetGlnGluGluLeuAsn : 94
|||||||:::||||||||||||||||||||||||||||||||||||||||||||||||
lValLysGlnGlnGluAlaLeuAlaAlaAlaArgLeuLysMetGlnGluGluLeuAsn
406179 : TGTTAAACAACAGGAGGCTTTAGCAGCTGCTCGTTTGAAAATGCAAGAAGAATTAAAT : 406123
95 : AlaGlnValGluLysHisLysGluLysLeuArgGln >>>> Target Intron 3 : 107
|||||||||||||||||||||||||||||||||||| 3397 bp
AlaGlnValGluLysHisLysGluLysLeuArgGln++
406122 : GCACAAGTTGAAAAGCATAAGGAAAAACTAAGACAGgt.................... : 406082
108 : >>>> LeuGluGluGlnLysArgArgGlnLysIleGluMetTrpAspSerMetGln : 123
|||||||||||||||||||||||||||||||||||||||||||||||||||
++LeuGluGluGlnLysArgArgGlnLysIleGluMetTrpAspSerMetGln
406081 : .....agCTTGAAGAACAAAAAAGGAGACAGAAGATTGAAATGTGGGACAGCATGCAA : 402639
124 : GluGlyLysSerTyrLysGlyThrAlaArgLysProProLysGluAspSerProGlyP : 143
|||||||||||||||||||||||||||||||||||||||:::||||||||||||||||
GluGlyLysSerTyrLysGlyThrAlaArgLysProProGluGluAspSerProGlyP
402638 : GAAGGGAAAAGTTACAAAGGAACTGCAAGAAAGCCTCCCGAAGAAGACAGTCCTGGGC : 402579
144 : roSerThrSerSerValLeuProAsnArgLysSerAspArgLysProLeuArgGlyGl : 162
|||||||||||||||||||||||...||||||||||||||||||||||||||||||||
roSerThrSerSerValLeuProLysArgLysSerAspArgLysProLeuArgGlyGl
402578 : CTTCTACTTCATCGGTCCTGCCAAAACGAAAATCGGACAGGAAGCCTCTGCGGGGAGG : 402522
163 : y{G} >>>> Target Intron 4 >>>> {ly}TyrAsnProLeuSerGlyGlu : 170
|{|} 2372 bp {||}|||||||||||||||||||||
y{G}++ ++{ly}TyrAsnProLeuSerGlyGlu
402521 : T{G}gt.........................ag{GT}TACAACCCGTTGTCTGGTGAA : 400126
171 : GlyGlyGlyAlaCysSerTrpArgProGlyArgArgGlyProSerSerGlyGly : 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlyGlyGlyAlaCysSerTrpArgProGlyArgArgGlyProSerSerGlyGly
400125 : GGAGGTGGAGCCTGCTCTTGGAGGCCTGGACGCCGAGGCCCGTCATCTGGTGGA : 400070
vulgar: SPP00000100_2.0 0 188 . gi|472268615|gb|KB716042.1| 414768 400069 - 919 M 25 75 S 0 1 5 0 2 I 0 686 3 0 2 S 1 2 M 44 132 S 0 1 5 0 2 I 0 7672 3 0 2 S 1 2 M 35 105 5 0 2 I 0 3393 3 0 2 M 56 168 S 0 1 5 0 2 I 0 2368 3 0 2 S 1 2 M 25 75
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local gene 400070 414768 919 - . gene_id 1 ; sequence SPP00000100_2.0 ; gene_orientation +
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local cds 414693 414768 . - .
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local exon 414693 414768 . - . insertions 0 ; deletions 0
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local splice5 414691 414692 . - . intron_id 1 ; splice_site "GT"
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local intron 414003 414692 . - . intron_id 1
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local splice3 414003 414004 . - . intron_id 0 ; splice_site "AG"
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local cds 413868 414002 . - .
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local exon 413868 414002 . - . insertions 0 ; deletions 0
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local splice5 413866 413867 . - . intron_id 2 ; splice_site "GT"
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local intron 406192 413867 . - . intron_id 2
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local splice3 406192 406193 . - . intron_id 1 ; splice_site "AG"
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local cds 406085 406191 . - .
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local exon 406085 406191 . - . insertions 0 ; deletions 0
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local splice5 406083 406084 . - . intron_id 3 ; splice_site "GT"
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local intron 402688 406084 . - . intron_id 3
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local splice3 402688 402689 . - . intron_id 2 ; splice_site "AG"
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local cds 402519 402687 . - .
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local exon 402519 402687 . - . insertions 0 ; deletions 0
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local splice5 402517 402518 . - . intron_id 4 ; splice_site "GT"
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local intron 400147 402518 . - . intron_id 4
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local splice3 400147 400148 . - . intron_id 3 ; splice_site "AG"
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local cds 400070 400146 . - .
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local exon 400070 400146 . - . insertions 0 ; deletions 0
gi|472268615|gb|KB716042.1| exonerate:protein2genome:local similarity 400070 414768 919 - . alignment_id 1 ; Query SPP00000100_2.0 ; Align 414769 1 75 ; Align 414001 27 132 ; Align 406190 72 105 ; Align 402688 107 168 ; Align 400145 164 75
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis