Command line: [exonerate -m p2g --showtargetgff -q ./SelS.fa -t SelS.carpeta/genomic.fa]
Hostname: [ws116037]

C4 Alignment:
------------
         Query: SPP00000100_2.0 # Protein # Selenoprotein S (SelS) # Human (Homo sapiens)
        Target: gi|472269406|gb|KB715283.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00577, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 381
   Query range: 68 -> 181
  Target range: 230428 -> 230088

     69 : AlaValGluProAspValValValLysArgGlnGluAlaLeuAlaAlaAlaArgLeuL :     88
          |||||||||||||||   |||:!!||| !!|||||||||:!!||||||||| !!||||
          AlaValGluProAsp---ValIleLysGlyGlnGluAlaValAlaAlaAlaCysLeuL
 230428 : GCTGTGGAACCTGAT---GTCATTAAAGGACAAGAGGCTGTAGCAGCTGCTTGTTTGA : 230374

     89 : ysMetGlnGluGluLeuAsnAlaGlnValGluLysHisLysGluLysLeuLysGlnLe :    107
          |||||||||||||||||!!.||||||! !||||||:!!||||||||||||!:!|||!!
          ysMetGlnGluGluLeuLysAlaGlnGlyGluLysTyrLysGluLysLeuArgGlnPh
 230373 : AAATGCAAGAGGAATTAAAGGCACAGGGTGAAAAGTATAAGGAAAAACTAAGACAGTT : 230317

    108 : uGluGluGlu-LysArgArgGlnLysIleGluMetTrpAspSerMetGlnGluGlyLy :    126
          !||||||:!!#||||||||||||||||||! !||||||||||||||||||||||||||
          eGluGluGln#LysArgArgGlnLysIleGlyMetTrpAspSerMetGlnGluGlyLy
 230316 : CGAAGAACAAAAAAAGGAGACAGAAGATTGGAATGTGGGACAGCATGCAAGAAGGAAA : 230259

    127 : sSerTyrLysGlyAsnAlaLysLysProGlnGluGluAspSerProGlyProSerThr :    145
          |!!!|||!!.||||||!.!!:!||||||! !||||||!!:||| !!|||! !|||! !
          sThrTyrAsnGlyAsnValArgLysProProGluGluGluSerAlaGlyLeuSerIle
 230258 : AACGTACAATGGAAATGTAAGAAAGCCCCCAGAAGAAGAGAGTGCTGGGCTTTCAATC : 230202

    146 : SerSerValLeu<->LysArgLysSerAspArgLysProLeuArgGlyGlyGlyTyrA :    164
          |||||||||:!!   ||| !!||||||||||||||||||||||||||||||||||||:
          SerSerValIleValLys***LysSerAspArgLysProLeuArgGlyGlyGlyTyrH
 230201 : TCATCAGTCATTGTGAAATGAAAATCTGACAGAAAGCCTTTGCGGGGAGGTGGTTACC : 230142

    165 : snProLeuSerGlyGluGlyGlyGlyAlaCysSerTrpArgProGlyArgArg :    181
          !!||||||||||||||||||||||||.!!! !|||||||||||||||!:!|||
          isProLeuSerGlyGluGlyGlyGlyThrTyrSerTrpArgProGlyGlnArg
 230141 : ACCCTTTGTCTGGTGAAGGAGGTGGAACCTACTCCTGGAGACCTGGGCAGAGG : 230089

vulgar: SPP00000100_2.0 68 181 . gi|472269406|gb|KB715283.1| 230428 230088 - 381 M 5 15 G 1 0 M 36 108 F 0 1 M 39 117 G 0 3 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269406|gb|KB715283.1|	exonerate:protein2genome:local	gene	230089	230428	381	-	.	gene_id 1 ; sequence SPP00000100_2.0 ; gene_orientation .
gi|472269406|gb|KB715283.1|	exonerate:protein2genome:local	cds	230089	230428	.	-	.	
gi|472269406|gb|KB715283.1|	exonerate:protein2genome:local	exon	230089	230428	.	-	.	insertions 3 ; deletions 1 ; frameshifts 1
gi|472269406|gb|KB715283.1|	exonerate:protein2genome:local	similarity	230089	230428	381	-	.	alignment_id 1 ; Query SPP00000100_2.0 ; Align 230429 69 15 ; Align 230414 75 108 ; Align 230305 111 117 ; Align 230185 150 96
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000100_2.0 # Protein # Selenoprotein S (SelS) # Human (Homo sapiens)
        Target: gi|472269406|gb|KB715283.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00577, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 108
   Query range: 37 -> 64
  Target range: 230510 -> 230429

     38 : ValPheSerCysIleLeuLeuTyrValValPheGlnLysLeuSerAlaArgLeuArgA :     57
          |||||||||||||||||||||! !|||||||||||||||||||||.!!  !|||||||
          ValPheSerCysIleLeuLeuCysValValPheGlnLysLeuSerThr***LeuArgA
 230510 : GTGTTCAGCTGCATCCTTCTCTGTGTGGTGTTTCAGAAGCTTTCCACCTAGCTGAGGG : 230453

     58 : laLeuArgGlnArgGlnLeuAsp :     64
          |||||||||||||||||||||||
          laLeuArgGlnArgGlnLeuAsp
 230452 : CCTTGAGGCAGAGGCAACTGGAT : 230430

vulgar: SPP00000100_2.0 37 64 . gi|472269406|gb|KB715283.1| 230510 230429 - 108 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269406|gb|KB715283.1|	exonerate:protein2genome:local	gene	230430	230510	108	-	.	gene_id 2 ; sequence SPP00000100_2.0 ; gene_orientation .
gi|472269406|gb|KB715283.1|	exonerate:protein2genome:local	cds	230430	230510	.	-	.	
gi|472269406|gb|KB715283.1|	exonerate:protein2genome:local	exon	230430	230510	.	-	.	insertions 0 ; deletions 0
gi|472269406|gb|KB715283.1|	exonerate:protein2genome:local	similarity	230430	230510	108	-	.	alignment_id 2 ; Query SPP00000100_2.0 ; Align 230511 38 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis