Command line: [exonerate -m p2g --showtargetgff -q ./SelS.fa -t SelS.carpeta/genomic.fa] Hostname: [ws116037] C4 Alignment: ------------ Query: SPP00000100_2.0 # Protein # Selenoprotein S (SelS) # Human (Homo sapiens) Target: gi|472269406|gb|KB715283.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00577, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 381 Query range: 68 -> 181 Target range: 230428 -> 230088 69 : AlaValGluProAspValValValLysArgGlnGluAlaLeuAlaAlaAlaArgLeuL : 88 ||||||||||||||| |||:!!||| !!|||||||||:!!||||||||| !!|||| AlaValGluProAsp---ValIleLysGlyGlnGluAlaValAlaAlaAlaCysLeuL 230428 : GCTGTGGAACCTGAT---GTCATTAAAGGACAAGAGGCTGTAGCAGCTGCTTGTTTGA : 230374 89 : ysMetGlnGluGluLeuAsnAlaGlnValGluLysHisLysGluLysLeuLysGlnLe : 107 |||||||||||||||||!!.||||||! !||||||:!!||||||||||||!:!|||!! ysMetGlnGluGluLeuLysAlaGlnGlyGluLysTyrLysGluLysLeuArgGlnPh 230373 : AAATGCAAGAGGAATTAAAGGCACAGGGTGAAAAGTATAAGGAAAAACTAAGACAGTT : 230317 108 : uGluGluGlu-LysArgArgGlnLysIleGluMetTrpAspSerMetGlnGluGlyLy : 126 !||||||:!!#||||||||||||||||||! !|||||||||||||||||||||||||| eGluGluGln#LysArgArgGlnLysIleGlyMetTrpAspSerMetGlnGluGlyLy 230316 : CGAAGAACAAAAAAAGGAGACAGAAGATTGGAATGTGGGACAGCATGCAAGAAGGAAA : 230259 127 : sSerTyrLysGlyAsnAlaLysLysProGlnGluGluAspSerProGlyProSerThr : 145 |!!!|||!!.||||||!.!!:!||||||! !||||||!!:||| !!|||! !|||! ! sThrTyrAsnGlyAsnValArgLysProProGluGluGluSerAlaGlyLeuSerIle 230258 : AACGTACAATGGAAATGTAAGAAAGCCCCCAGAAGAAGAGAGTGCTGGGCTTTCAATC : 230202 146 : SerSerValLeu<->LysArgLysSerAspArgLysProLeuArgGlyGlyGlyTyrA : 164 |||||||||:!! ||| !!||||||||||||||||||||||||||||||||||||: SerSerValIleValLys***LysSerAspArgLysProLeuArgGlyGlyGlyTyrH 230201 : TCATCAGTCATTGTGAAATGAAAATCTGACAGAAAGCCTTTGCGGGGAGGTGGTTACC : 230142 165 : snProLeuSerGlyGluGlyGlyGlyAlaCysSerTrpArgProGlyArgArg : 181 !!||||||||||||||||||||||||.!!! !|||||||||||||||!:!||| isProLeuSerGlyGluGlyGlyGlyThrTyrSerTrpArgProGlyGlnArg 230141 : ACCCTTTGTCTGGTGAAGGAGGTGGAACCTACTCCTGGAGACCTGGGCAGAGG : 230089 vulgar: SPP00000100_2.0 68 181 . gi|472269406|gb|KB715283.1| 230428 230088 - 381 M 5 15 G 1 0 M 36 108 F 0 1 M 39 117 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2013-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # gi|472269406|gb|KB715283.1| exonerate:protein2genome:local gene 230089 230428 381 - . gene_id 1 ; sequence SPP00000100_2.0 ; gene_orientation . gi|472269406|gb|KB715283.1| exonerate:protein2genome:local cds 230089 230428 . - . gi|472269406|gb|KB715283.1| exonerate:protein2genome:local exon 230089 230428 . - . insertions 3 ; deletions 1 ; frameshifts 1 gi|472269406|gb|KB715283.1| exonerate:protein2genome:local similarity 230089 230428 381 - . alignment_id 1 ; Query SPP00000100_2.0 ; Align 230429 69 15 ; Align 230414 75 108 ; Align 230305 111 117 ; Align 230185 150 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000100_2.0 # Protein # Selenoprotein S (SelS) # Human (Homo sapiens) Target: gi|472269406|gb|KB715283.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00577, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 37 -> 64 Target range: 230510 -> 230429 38 : ValPheSerCysIleLeuLeuTyrValValPheGlnLysLeuSerAlaArgLeuArgA : 57 |||||||||||||||||||||! !|||||||||||||||||||||.!! !||||||| ValPheSerCysIleLeuLeuCysValValPheGlnLysLeuSerThr***LeuArgA 230510 : GTGTTCAGCTGCATCCTTCTCTGTGTGGTGTTTCAGAAGCTTTCCACCTAGCTGAGGG : 230453 58 : laLeuArgGlnArgGlnLeuAsp : 64 ||||||||||||||||||||||| laLeuArgGlnArgGlnLeuAsp 230452 : CCTTGAGGCAGAGGCAACTGGAT : 230430 vulgar: SPP00000100_2.0 37 64 . gi|472269406|gb|KB715283.1| 230510 230429 - 108 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2013-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # gi|472269406|gb|KB715283.1| exonerate:protein2genome:local gene 230430 230510 108 - . gene_id 2 ; sequence SPP00000100_2.0 ; gene_orientation . gi|472269406|gb|KB715283.1| exonerate:protein2genome:local cds 230430 230510 . - . gi|472269406|gb|KB715283.1| exonerate:protein2genome:local exon 230430 230510 . - . insertions 0 ; deletions 0 gi|472269406|gb|KB715283.1| exonerate:protein2genome:local similarity 230430 230510 108 - . alignment_id 2 ; Query SPP00000100_2.0 ; Align 230511 38 81 # --- END OF GFF DUMP --- # -- completed exonerate analysis