TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000100_2.0 # Protein # Selenoprotein S (SelS) # Walrus
(Odobenus rosmarus)
(188 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472268615|gb|KB716042.1| Leptonychotes weddellii isolate WS11... 119 1e-25
gi|472269406|gb|KB715283.1| Leptonychotes weddellii isolate WS11... 117 3e-25
gi|472267943|gb|KB716714.1| Leptonychotes weddellii isolate WS11... 37 0.73
gi|472269042|gb|KB715615.1| Leptonychotes weddellii isolate WS11... 36 1.2
gi|472267635|gb|KB717022.1| Leptonychotes weddellii isolate WS11... 35 1.6
gi|472269051|gb|KB715606.1| Leptonychotes weddellii isolate WS11... 35 1.6
gi|472269091|gb|KB715566.1| Leptonychotes weddellii isolate WS11... 35 2.8
gi|472269847|gb|KB714842.1| Leptonychotes weddellii isolate WS11... 35 2.8
gi|472269765|gb|KB714924.1| Leptonychotes weddellii isolate WS11... 34 3.6
gi|472269209|gb|KB715448.1| Leptonychotes weddellii isolate WS11... 34 4.7
gi|472269679|gb|KB715010.1| Leptonychotes weddellii isolate WS11... 34 4.7
gi|472269803|gb|KB714886.1| Leptonychotes weddellii isolate WS11... 34 4.7
gi|472269843|gb|KB714846.1| Leptonychotes weddellii isolate WS11... 34 4.7
gi|472269890|gb|KB714799.1| Leptonychotes weddellii isolate WS11... 34 4.7
gi|472269905|gb|KB714784.1| Leptonychotes weddellii isolate WS11... 34 4.7
gi|472267453|gb|KB717204.1| Leptonychotes weddellii isolate WS11... 33 6.2
gi|472267737|gb|KB716920.1| Leptonychotes weddellii isolate WS11... 33 6.2
gi|472268193|gb|KB716464.1| Leptonychotes weddellii isolate WS11... 33 6.2
gi|472268629|gb|KB716028.1| Leptonychotes weddellii isolate WS11... 33 6.2
gi|472269729|gb|KB714960.1| Leptonychotes weddellii isolate WS11... 33 6.2
gi|472269868|gb|KB714821.1| Leptonychotes weddellii isolate WS11... 33 6.2
gi|472265950|gb|KB718707.1| Leptonychotes weddellii isolate WS11... 33 8.0
gi|472265978|gb|KB718679.1| Leptonychotes weddellii isolate WS11... 33 8.0
gi|472266685|gb|KB717972.1| Leptonychotes weddellii isolate WS11... 33 8.0
gi|472266730|gb|KB717927.1| Leptonychotes weddellii isolate WS11... 33 8.0
gi|472266886|gb|KB717771.1| Leptonychotes weddellii isolate WS11... 33 8.0
gi|472267828|gb|KB716829.1| Leptonychotes weddellii isolate WS11... 33 8.0
gi|472268785|gb|KB715872.1| Leptonychotes weddellii isolate WS11... 33 8.0
gi|472269304|gb|KB715353.1| Leptonychotes weddellii isolate WS11... 33 8.0
>gi|472268615|gb|KB716042.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01336, whole genome
shotgun sequence
Length = 659818
Score = 119 bits (297), Expect = 1e-25
Identities = 56/58 (96%), Positives = 57/58 (98%)
Frame = -2
Query: 106 QLEEQKRRQKIEMWDSMQEGKSYKGTARKPPKEDSPGPSTSSVLPNRKSDRKPLRGGG 163
QLEEQKRRQKIEMWDSMQEGKSYKGTARKPP+EDSPGPSTSSVLP RKSDRKPLRGGG
Sbjct: 402690 QLEEQKRRQKIEMWDSMQEGKSYKGTARKPPEEDSPGPSTSSVLPKRKSDRKPLRGGG 402517
Score = 70.9 bits (172), Expect = 3e-11
Identities = 35/38 (92%), Positives = 38/38 (100%)
Frame = -1
Query: 70 VEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQL 107
+EPDVVVK+QEALAAARLKMQEELNAQVEKHKEKLRQ+
Sbjct: 406195 LEPDVVVKQQEALAAARLKMQEELNAQVEKHKEKLRQV 406082
Score = 60.8 bits (146), Expect = 4e-08
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = -2
Query: 25 TVGSLLATYGWYIVFSCILLYVVFQKLST 53
+VGSLLATYGWYIVFSCILLYVVFQKLST
Sbjct: 414006 SVGSLLATYGWYIVFSCILLYVVFQKLST 413920
Score = 51.6 bits (122), Expect = 2e-05
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = -2
Query: 1 MERDGQLLSARPALETEGFRYLHVT 25
MERDGQLLSARPALETEG RYLHVT
Sbjct: 414768 MERDGQLLSARPALETEGLRYLHVT 414694
Score = 39.7 bits (91), Expect = 0.086
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 163 GYNPLSGEGGGACSW 177
GYNPLSGEGGGACSW
Sbjct: 400147 GYNPLSGEGGGACSW 400103
>gi|472269406|gb|KB715283.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00577, whole genome
shotgun sequence
Length = 1120695
Score = 117 bits (293), Expect = 3e-25
Identities = 76/183 (41%), Positives = 96/183 (52%), Gaps = 6/183 (3%)
Frame = -1
Query: 1 MERDGQLLSARPALETEGFRYLHVTVGSLLATYGWYIVFSCILLYVVFQKLSTXXXXXXX 60
ME D + LS +PALETEG +L VTV LL + L+ +S
Sbjct: 230631 MELDEEQLSTQPALETEGLHFLQVTVSPLLVPMAGTSPAEGVQLHPSLCGVSEAFHLAEG 230452
Query: 61 XXXXXXXXXVEPDVVVKRQEALAAARL------KMQEELNAQVEKHKEKLRQLEEQKRRQ 114
E + +L RL K + +V+ ++ + +KRRQ
Sbjct: 230451 LE-------AEATGWLWNLMSLKDKRL*QLLV*KCKRN*RHRVKSIRKN*DSSKNKKRRQ 230293
Query: 115 KIEMWDSMQEGKSYKGTARKPPKEDSPGPSTSSVLPNRKSDRKPLRGGGYNPLSGEGGGA 174
KI MWDSMQEGK+Y G RKPP+E+S G S SSV+ KSDRKPLRGGGY+PLSGEGGG
Sbjct: 230292 KIGMWDSMQEGKTYNGNVRKPPEEESAGLSISSVIVK*KSDRKPLRGGGYHPLSGEGGGT 230113
Query: 175 CSW 177
SW
Sbjct: 230112 YSW 230104
>gi|472267943|gb|KB716714.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02008, whole genome
shotgun sequence
Length = 485126
Score = 36.6 bits (83), Expect = 0.73
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +1
Query: 119 WDSMQEGKSYKGTARKPPKEDSPGPSTSSVLPNRKSDRKPLRGGGYNPLSGEGGGACS 176
W + +++ G A+ P++D GPST+S+L + P R G+ LSG GG CS
Sbjct: 259489 WGLCRLCRAFPGLAQLLPQQDRGGPSTASLLSLCSA---PTRSPGHIHLSGVRGGPCS 259653
>gi|472269042|gb|KB715615.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00909, whole genome
shotgun sequence
Length = 850319
Score = 35.8 bits (81), Expect = 1.2
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 88 KMQEELNAQVEKHKEKLRQLEEQKRRQKIEMWDSMQEGKSYKGTARKPPKEDSPGPSTSS 147
KM EELN Q+E+ K ++ + E R+Q+ + SM + PPK P +
Sbjct: 636692 KMIEELNKQIEEQKRQVEEQEAALRQQRAAVGASMAHFSVAEALMSPPPKSSLP---QAE 636862
Query: 148 VLP-NRKSDRKPLRGGGYNPLSGEG 171
+ P +++ +P G P +G G
Sbjct: 636863 LFPQEQQAASRPAALPGAPPAAGPG 636937
>gi|472267635|gb|KB717022.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02316, whole genome
shotgun sequence
Length = 417116
Score = 35.4 bits (80), Expect = 1.6
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLRQLEEQKRRQKIEMWDSMQEGKSYKGTAR--K 134
+R+E K +E + EK KE+ R+ E QKR +K E +EG+ +G R K
Sbjct: 269415 ERKEGRGEEERKKKERKKKEKEKKKERERKKERQKRERKEEREGGKKEGRMNEGKEREGK 269594
Query: 135 PPKEDSPGP 143
+E+ P
Sbjct: 269595 EGREEGKKP 269621
>gi|472269051|gb|KB715606.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00900, whole genome
shotgun sequence
Length = 999427
Score = 35.4 bits (80), Expect = 1.6
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = -2
Query: 98 EKHKEKLRQLEEQKRRQKIEMWDSMQEGKSYKGTARKPPKEDSPGPSTSSVLPNRKSDRK 157
EKHKE+ ++ E KRR+K + + K + +K KE+ ++ +RK
Sbjct: 699159 EKHKERKKKAGEGKRRKK--EGEGKRRKKKKRKKKKKE*KEEEEEVEEEGKKKKKQKERK 698986
Query: 158 PLRGGGYNPLSGEGGG 173
+GGG G GGG
Sbjct: 698985 NFKGGG-----GRGGG 698953
>gi|472269091|gb|KB715566.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00860, whole genome
shotgun sequence
Length = 946239
Score = 34.7 bits (78), Expect = 2.8
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +1
Query: 95 AQVEKHKEKLRQLEEQKRRQKIEMW 119
+QV+ HK KLR L+EQ+ ++++EMW
Sbjct: 340627 SQVDSHKMKLRSLQEQQLKREMEMW 340701
>gi|472269847|gb|KB714842.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00136, whole genome
shotgun sequence
Length = 2099729
Score = 34.7 bits (78), Expect = 2.8
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Frame = +2
Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLRQLEE-----QKRRQKIEMWDSMQEGK 126
+R+ A R K +EE A+VE+ +KLRQLEE Q++R K E D EGK
Sbjct: 1387022 ERRAAEERQRAKAEEEEKAKVEE--QKLRQLEENRREMQEKRHKGEKVDEKMEGK 1387180
>gi|472269765|gb|KB714924.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00218, whole genome
shotgun sequence
Length = 1840144
Score = 34.3 bits (77), Expect = 3.6
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = -2
Query: 108 EEQKRRQKIE-----MWDSMQEGKSYKGTARKPPKEDSPGPS--TSSVLPNRKSDRKPLR 160
++QK + KI W EGK+ GT PP DSPGPS S++LP + PL
Sbjct: 907767 DQQKTKTKISGEGSGPWQRWSEGKASLGT-HAPPAPDSPGPSLCDSALLP---AGLPPLP 907600
Query: 161 GGGYNPLSG 169
G L+G
Sbjct: 907599 WGEQTTLAG 907573
>gi|472269209|gb|KB715448.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00742, whole genome
shotgun sequence
Length = 926998
Score = 33.9 bits (76), Expect = 4.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 9/41 (21%)
Frame = +1
Query: 119 WDSMQEGKSYK---------GTARKPPKEDSPGPSTSSVLP 150
W S G S++ GTAR PP++ +P PST+ +LP
Sbjct: 529174 WGSCSSGLSHRPSLRRQARPGTARFPPRDSAPSPSTTRLLP 529296
>gi|472269679|gb|KB715010.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00304, whole genome
shotgun sequence
Length = 1579526
Score = 33.9 bits (76), Expect = 4.7
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Frame = +2
Query: 71 EPDVVVKRQEALA-AARLKMQEEL-NAQVEKHK-------EKLRQLEEQKRRQKIEMWDS 121
E V++ RQ+ + L+ EEL N +V+K K E+ R+ EE+ RRQ+ EM
Sbjct: 188291 EHQVMLMRQDLMKHQEELRRLEELHNQEVQKRKQLELRQEEERRRREEEMRRQQEEMMRR 188470
Query: 122 MQEGKSYKGT 131
QEG +KGT
Sbjct: 188471 QQEG--FKGT 188494
>gi|472269803|gb|KB714886.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00180, whole genome
shotgun sequence
Length = 2023338
Score = 33.9 bits (76), Expect = 4.7
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -1
Query: 94 NAQVEKHKEKLRQLEEQKRRQKIEMWDSMQEGKSYKGTARK 134
+ QV+KHK + E+ +R KI W ++ + K+ +GTA K
Sbjct: 1325967 SVQVKKHKTEELSQSEKHQRDKITKWVNLDQKKNVRGTAGK 1325845
>gi|472269843|gb|KB714846.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00140, whole genome
shotgun sequence
Length = 2280085
Score = 33.9 bits (76), Expect = 4.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 109 EQKRRQKIEMWDSMQEGKSYKGTARKPPKEDSPGPSTSSVLPNRKSDRKPLR 160
E +RRQ +E+ + + K AR+PP ++P P + R+P R
Sbjct: 136906 EVRRRQSVELHSPQSQPRGSKA*ARRPPGPEAPAPGSGGTSSEGLPARRPAR 136751
>gi|472269890|gb|KB714799.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00093, whole genome
shotgun sequence
Length = 2860855
Score = 33.9 bits (76), Expect = 4.7
Identities = 15/51 (29%), Positives = 32/51 (62%)
Frame = -3
Query: 86 RLKMQEELNAQVEKHKEKLRQLEEQKRRQKIEMWDSMQEGKSYKGTARKPP 136
+L+ ++E + +K +++ R+ +E+K+ +K E + +EGK K +KPP
Sbjct: 2699153 KLERKKERKKERKKERKRERKKKERKKERKKERKEGRKEGKGRKERKQKPP 2699001
>gi|472269905|gb|KB714784.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00078, whole genome
shotgun sequence
Length = 2802752
Score = 33.9 bits (76), Expect = 4.7
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +3
Query: 93 LNAQVEKHKEKLRQLEEQKR---RQKIEMWDSMQEGKSYKGTARKPPKEDSPGPSTSSVL 149
L+ + +HK+ RQ + +K+ R + MWDS+ + + + R+P S S L
Sbjct: 2130420 LSERETEHKQGKRQRQREKQAPCRARSPMWDSIPGPRDHDLSRRQPLN*LSHQASPEETL 2130599
Query: 150 PNRKSDRKPLRGGG 163
+RK + RGGG
Sbjct: 2130600 NHRKQTKGCWRGGG 2130641
>gi|472267453|gb|KB717204.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02498, whole genome
shotgun sequence
Length = 353243
Score = 33.5 bits (75), Expect = 6.2
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -3
Query: 130 GTARKPPKEDSPGPSTSSVLPNRKSDRKPLRGGGYNPLSGEGGG 173
G +R PP P ST SV + K P RGG +PL E G
Sbjct: 244383 GASRPPPAPRGPEKSTRSVAGSFKLFHSPPRGGDPSPLRAEAAG 244252
>gi|472267737|gb|KB716920.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02214, whole genome
shotgun sequence
Length = 443288
Score = 33.5 bits (75), Expect = 6.2
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = +3
Query: 112 RRQKIEMWDSMQEGKSYKGTAR------KPPKEDSPGPSTSSVLPNRKSDRKPLRGGGYN 165
R+QK E W+ + G+AR + PK +P P V R + GGGY
Sbjct: 302388 RKQKSEEWEGSESLVPRWGSARGLFPKWRGPKRLAPRPGKGPVRSWRNA------GGGYA 302549
Query: 166 PLSGEGGGA 174
+S +GGGA
Sbjct: 302550 SVSNQGGGA 302576
>gi|472268193|gb|KB716464.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01758, whole genome
shotgun sequence
Length = 545350
Score = 33.5 bits (75), Expect = 6.2
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 25 TVGSLLATY-GWYIVFSCILLYVVFQKL 51
T G L TY W+ +F C+LL VFQKL
Sbjct: 530220 TAGMLFVTYCSWFYLFGCLLLLCVFQKL 530303
>gi|472268629|gb|KB716028.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01322, whole genome
shotgun sequence
Length = 796902
Score = 33.5 bits (75), Expect = 6.2
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
Frame = +2
Query: 98 EKHKEKLRQLEE---QKRRQKIEMWDSMQEG-----KSYKGTARKPPKEDSPGPSTSS-- 147
E+ +EK R E+ +K R ++ QEG + KG +K ++S GP
Sbjct: 574334 EEEEEKKRACEKS*ARKGRDRVGKKKPEQEGAK*AERKVKGKKKKGVGKESTGPGLGGGG 574513
Query: 148 --VLPNRK-SDRKPLRGGGYNPLSGEGGG 173
P R+ R P RGGG G GGG
Sbjct: 574514 VGETPERRVGQRGPSRGGGIQTPGGGGGG 574600
>gi|472269729|gb|KB714960.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00254, whole genome
shotgun sequence
Length = 1842027
Score = 33.5 bits (75), Expect = 6.2
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Frame = +3
Query: 106 QLEEQKRRQK-IEMWDSMQEGKSYKGTARKPPKEDS-PGPSTSS--------VLPNRKSD 155
Q E+Q RQ MWDS+Q + + + R+ P + S PG +S+ PNRK
Sbjct: 714837 QREKQTPRQAGSPMWDSIQRLQDHDLSRRQSPSQLSHPGTLSSTS*ERRSFLFYPNRKHT 715016
Query: 156 RKPLRGGGYNP 166
RK + G +NP
Sbjct: 715017 RKEILGTVFNP 715049
>gi|472269868|gb|KB714821.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00115, whole genome
shotgun sequence
Length = 2682543
Score = 33.5 bits (75), Expect = 6.2
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 21 YLHVTVGSLLATYGWYIVFSCILLYVVFQKLS 52
+ H V L T+G YI+F+C Y VFQ+LS
Sbjct: 1094488 FFHWLVSHSLQTHGSYIIFACRRAYYVFQELS 1094583
>gi|472265950|gb|KB718707.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold04001, whole genome
shotgun sequence
Length = 171227
Score = 33.1 bits (74), Expect = 8.0
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = -3
Query: 136 PKEDSPGPSTSSVLPNRKSDRKPLRGGGY-----NPLSGEGGGACS 176
P PGP+ P+R ++++P +G G+ P +G GGG C+
Sbjct: 62709 PSPAQPGPAQPLTTPDRGANQRPGQGWGWGWGWGRPATGGGGGPCA 62572
>gi|472265978|gb|KB718679.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold03973, whole genome
shotgun sequence
Length = 164550
Score = 33.1 bits (74), Expect = 8.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 115 KIEMWDSMQEGKSYKGTARKPPKEDSPGP 143
K+E WD Q+G++ A PK+DSP P
Sbjct: 79438 KVEAWDGGQDGQAPGANAGDDPKDDSPNP 79352
>gi|472266685|gb|KB717972.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold03266, whole genome
shotgun sequence
Length = 305276
Score = 33.1 bits (74), Expect = 8.0
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Frame = -3
Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLRQLEEQKRRQKIEMWDSMQEGKSYKGTARKPP 136
K+++ +++ K + + + + + K + + ++++++K + S S +G +PP
Sbjct: 96075 KKKKHKKSSKHKRKHKADPEEKSSKTESGEKSKKRKKRKRKKNKSSAPADSERGPKPEPP 95896
Query: 137 KEDSPGPSTSSVLPNRKSDRKPL---RGGGYNPLSGEGGG 173
SP P S R+PL GG G GGG
Sbjct: 95895 GSGSPAPPRRRRRAQDASQRRPLPAEEGGSGKKDEGGGGG 95776
>gi|472266730|gb|KB717927.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold03221, whole genome
shotgun sequence
Length = 253189
Score = 33.1 bits (74), Expect = 8.0
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = -1
Query: 90 QEELNAQVEKHKEKLRQLEEQKRRQKIEMWDSMQEGKSYKGTARKPPKEDSPGPSTSSVL 149
Q E +++ E+ + + R+ + R + + +EG S + R+ P+E GP
Sbjct: 98551 QREADSEPERGRPRAREGGQGPRERGT---GTQREGDSEPESGRQRPREGG*GPRERGTG 98381
Query: 150 PNRKSDRKPLRGGGYNP 166
R+ DR P RGG P
Sbjct: 98380 TQREGDRDPERGGQRAP 98330
>gi|472266886|gb|KB717771.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold03065, whole genome
shotgun sequence
Length = 275961
Score = 33.1 bits (74), Expect = 8.0
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 114 QKIEMWDSMQEGKSYKGTARKPPKEDSPGP 143
+K WD + GK G AR PPK SPGP
Sbjct: 181412 RKTNFWDKPENGK---GMARPPPKRTSPGP 181492
>gi|472267828|gb|KB716829.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02123, whole genome
shotgun sequence
Length = 498694
Score = 33.1 bits (74), Expect = 8.0
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = -1
Query: 124 EGKSYKGTARKPPKEDSPGPSTSSVLP------NRKSDRKPLRGGGYNPLSGEG 171
+G++ K +R P P PST + P N+ D+ + GG++PLS EG
Sbjct: 163297 DGRNSKRKSRDAPGVLRPRPSTGTSCPPHGLCQNKSQDQTRVESGGWSPLSTEG 163136
>gi|472268785|gb|KB715872.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01166, whole genome
shotgun sequence
Length = 843213
Score = 33.1 bits (74), Expect = 8.0
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = -2
Query: 84 AARLKMQEELNAQVEKHKEKLRQLEEQKRRQKIEMWDSMQEGKSYKGTARKPPK 137
AAR + + ++ + + K+R+ + R++K ++ DSM EGK T +KPP+
Sbjct: 252431 AARYYLDKSIDRRRSSGQLKIRRRRKSGRKKKKKLSDSMVEGKH*SVTFQKPPE 252270
>gi|472269304|gb|KB715353.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00647, whole genome
shotgun sequence
Length = 1069056
Score = 33.1 bits (74), Expect = 8.0
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 99 KHKEKLRQLEEQKRRQKIEMWDSMQEGKSYKGTARKPPKEDSPGPST 145
+ K K+ Q++ + R + WD+ Q GK +GT PP++ S G T
Sbjct: 106519 RRKPKMGQVQSAEAR--LASWDTEQSGKWIRGTKSSPPRDPSWGRMT 106385
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.314 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 580,480,594
Number of Sequences: 16710
Number of extensions: 7989391
Number of successful extensions: 46793
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 1010
Number of HSP's that attempted gapping in prelim test: 38526
Number of HSP's gapped (non-prelim): 19715
length of query: 188
length of database: 1,052,295,386
effective HSP length: 124
effective length of query: 64
effective length of database: 1,050,223,346
effective search space: 67214294144
effective search space used: 67214294144
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 73 (32.7 bits)