TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000100_2.0 # Protein # Selenoprotein S (SelS) # Human
(Homo sapiens)
(189 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472269406|gb|KB715283.1| Leptonychotes weddellii isolate WS11... 94 2e-32
gi|472268615|gb|KB716042.1| Leptonychotes weddellii isolate WS11... 87 6e-16
gi|472267943|gb|KB716714.1| Leptonychotes weddellii isolate WS11... 35 2.1
gi|472269868|gb|KB714821.1| Leptonychotes weddellii isolate WS11... 35 2.1
gi|472268193|gb|KB716464.1| Leptonychotes weddellii isolate WS11... 34 4.8
gi|472268947|gb|KB715710.1| Leptonychotes weddellii isolate WS11... 33 6.3
>gi|472269406|gb|KB715283.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00577, whole genome
shotgun sequence
Length = 1120695
Score = 94.4 bits (233), Expect(4) = 2e-32
Identities = 45/60 (75%), Positives = 50/60 (83%), Gaps = 1/60 (1%)
Frame = -1
Query: 118 MWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVL-KRKSDRKPLRGGGYNPLSGEGGGACSW 176
MWDSMQEGK+Y GN +KP EE+S G S SSV+ K KSDRKPLRGGGY+PLSGEGGG SW
Sbjct: 230283 MWDSMQEGKTYNGNVRKPPEEESAGLSISSVIVK*KSDRKPLRGGGYHPLSGEGGGTYSW 230104
Score = 40.4 bits (93), Expect(4) = 2e-32
Identities = 20/30 (66%), Positives = 21/30 (70%)
Frame = -1
Query: 1 MERQEESLSARPALETEGLRFLHTTVGSLL 30
ME EE LS +PALETEGL FL TV LL
Sbjct: 230631 MELDEEQLSTQPALETEGLHFLQVTVSPLL 230542
Score = 37.7 bits (86), Expect(4) = 2e-32
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3
Query: 70 VEPDVVVKRQEALAAARLKMQEELNAQ 96
VEPDV+ K QEA+AAA LKMQEEL AQ
Sbjct: 230425 VEPDVI-KGQEAVAAACLKMQEELKAQ 230348
Score = 29.6 bits (65), Expect(4) = 2e-32
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -2
Query: 38 VFSCILLYVVFQKLS 52
VFSCILL VVFQKLS
Sbjct: 230510 VFSCILLCVVFQKLS 230466
>gi|472268615|gb|KB716042.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01336, whole genome
shotgun sequence
Length = 659818
Score = 86.7 bits (213), Expect = 6e-16
Identities = 42/46 (91%), Positives = 43/46 (93%), Gaps = 1/46 (2%)
Frame = -2
Query: 118 MWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVL-KRKSDRKPLRGGG 162
MWDSMQEGKSYKG A+KP EEDSPGPSTSSVL KRKSDRKPLRGGG
Sbjct: 402654 MWDSMQEGKSYKGTARKPPEEDSPGPSTSSVLPKRKSDRKPLRGGG 402517
Score = 59.7 bits (143), Expect = 8e-08
Identities = 31/38 (81%), Positives = 32/38 (84%), Gaps = 4/38 (10%)
Frame = -2
Query: 19 LRFLHT----TVGSLLATYGWYIVFSCILLYVVFQKLS 52
L FL T +VGSLLATYGWYIVFSCILLYVVFQKLS
Sbjct: 414036 LSFLKTVFSFSVGSLLATYGWYIVFSCILLYVVFQKLS 413923
Score = 52.4 bits (124), Expect = 1e-05
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = -1
Query: 70 VEPDVVVKRQEALAAARLKMQEELNAQV 97
+EPDVVVK+QEALAAARLKMQEELNAQV
Sbjct: 406195 LEPDVVVKQQEALAAARLKMQEELNAQV 406112
Score = 41.2 bits (95), Expect = 0.030
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = -2
Query: 1 MERQEESLSARPALETEGLRFLHTT 25
MER + LSARPALETEGLR+LH T
Sbjct: 414768 MERDGQLLSARPALETEGLRYLHVT 414694
Score = 39.7 bits (91), Expect = 0.087
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1
Query: 162 GYNPLSGEGGGACSW 176
GYNPLSGEGGGACSW
Sbjct: 400147 GYNPLSGEGGGACSW 400103
>gi|472267943|gb|KB716714.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02008, whole genome
shotgun sequence
Length = 485126
Score = 35.0 bits (79), Expect = 2.1
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 119 WDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACS 175
W + +++ G A+ ++D GPST+S+L S P R G+ LSG GG CS
Sbjct: 259489 WGLCRLCRAFPGLAQLLPQQDRGGPSTASLLSLCS--APTRSPGHIHLSGVRGGPCS 259653
>gi|472269868|gb|KB714821.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00115, whole genome
shotgun sequence
Length = 2682543
Score = 35.0 bits (79), Expect = 2.1
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 21 FLHTTVGSLLATYGWYIVFSCILLYVVFQKLS 52
F H V L T+G YI+F+C Y VFQ+LS
Sbjct: 1094488 FFHWLVSHSLQTHGSYIIFACRRAYYVFQELS 1094583
>gi|472268193|gb|KB716464.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01758, whole genome
shotgun sequence
Length = 545350
Score = 33.9 bits (76), Expect = 4.8
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 11 RPALETEGLRFLHTTVGSLLATY-GWYIVFSCILLYVVFQKL 51
+P +T + T G L TY W+ +F C+LL VFQKL
Sbjct: 530178 QPPEDTAAQQV*GRTAGMLFVTYCSWFYLFGCLLLLCVFQKL 530303
>gi|472268947|gb|KB715710.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01004, whole genome
shotgun sequence
Length = 817108
Score = 33.5 bits (75), Expect = 6.3
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -1
Query: 126 KSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNP 165
+ +KG PQ PGPS S+ L+R+S + RG GY P
Sbjct: 664837 RGHKGRGSCPQSPQKPGPSMSA-LQRESHDRCDRGRGYGP 664721
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.313 0.130 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,005,186
Number of Sequences: 16710
Number of extensions: 5499080
Number of successful extensions: 29032
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 327
Number of HSP's that attempted gapping in prelim test: 26581
Number of HSP's gapped (non-prelim): 6708
length of query: 189
length of database: 1,052,295,386
effective HSP length: 124
effective length of query: 65
effective length of database: 1,050,223,346
effective search space: 68264517490
effective search space used: 68264517490
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 73 (32.7 bits)