Command line: [exonerate -m p2g --showtargetgff -q ./SelR3.fa -t SelR3.carpeta/genomic.fa]
Hostname: [ws116037]
C4 Alignment:
------------
Query: SPP00000092_2.0 # Protein # Methionine-R-sufoxide reductase 3 (SelR3) # Human (Homo sapiens)
Target: gi|472269653|gb|KB715036.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00330, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 895
Query range: 0 -> 192
Target range: 370528 -> 207961
1 : MetSerProArgArgThrLeuProArgProLeuSerLeuCysLeuSerLeuCysLeuC : 20
|||||||||||||||||||||||||||||||||||||||||| |||||||||!
MetSerProArgArgThrLeuProArgProLeuSerLeuCys------LeuCysLeuT
370528 : ATGAGCCCGCGGCGGACCCTCCCGCGCCCTCTCTCGCTCTGC------CTCTGCCTTT : 370477
21 : ysLeuCysLeuAlaAlaAlaLeuGlySerAlaGlnSer{G} >>>> Target Int : 33
! |||..! !|||!.!|||! ! !!:!!|||||||||{|} 47409
rpLeuAlaThrAlaValAlaArgArgAlaAlaGlnSer{G}++
370476 : GGCTGGCCACGGCCGTGGCGCGGAGAGCCGCGCAGTCA{G}gt............... : 370435
34 : ron 1 >>>> {ly}SerCysArgAspLysLysAsnCysLysValValPheSerGln : 47
bp {||}||||||||||||||||||||||||||||||||||||||||||
++{ly}SerCysArgAspLysLysAsnCysLysValValPheSerGln
370434 : ..........ag{GG}TCATGTAGGGATAAAAAGAACTGTAAGGTGGTCTTCTCCCAG : 322987
48 : GlnGluLeuArgLysArgLeuThrProLeuGlnTyrHisValThrGlnGluLysGlyT : 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlnGluLeuArgLysArgLeuThrProLeuGlnTyrHisValThrGlnGluLysGlyT
322986 : CAGGAACTAAGGAAGCGACTAACACCCCTGCAGTACCATGTCACTCAGGAGAAAGGGA : 322927
68 : hrGlu{Se} >>>> Target Intron 2 >>>> {r}AlaPheGluGlyGluTy : 75
|||||{||} 1651 bp {|}|||||||||||||||||
hrGlu{Se}++ ++{r}AlaPheGluGlyGluTy
322926 : CCGAA{AG}gt.........................ag{T}GCCTTTGAAGGAGAATA : 321252
76 : rThrHisHisLysAspProGlyIleTyrLysCysValValCysGlyThrProLeuPhe : 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rThrHisHisLysAspProGlyIleTyrLysCysValValCysGlyThrProLeuPhe
321251 : TACACATCACAAAGATCCTGGAATATATAAATGTGTTGTTTGTGGAACTCCGTTGTTC : 321195
95 : {Ly} >>>> Target Intron 3 >>>> {s}SerGluThrLysPheAspSerG : 103
{||} 31312 bp {|}||||||!:!|||||||||||||
{Ly}++ ++{s}SerGluSerLysPheAspSerG
321194 : {AA}gt.........................ag{G}TCAGAAAGCAAGTTTGACTCTG : 289856
104 : lySer{G} >>>> Target Intron 4 >>>> {ly}TrpProSerPheHisAs : 111
|||||{|} 73686 bp {||}|||||||||||||||||
lySer{G}++ ++{ly}TrpProSerPheHisAs
289855 : GTTCA{G}gt.........................ag{GT}TGGCCTTCATTCCACGA : 216146
112 : pValIleAsnSerGluAlaIleThrPheThrAspAspPheSerTyrGlyMetHisArg : 130
|||||||!:!|||!!:||||||||||||||||||||||||||||||||||||||||||
pValIleSerSerAspAlaIleThrPheThrAspAspPheSerTyrGlyMetHisArg
216145 : TGTGATCAGTTCTGATGCAATCACATTCACGGACGACTTTTCCTACGGGATGCACAGG : 216089
131 : ValGluThrSerCysSerGln >>>> Target Intron 5 >>>> CysGlyAl : 140
||||||||||||||||||||| 7942 bp ||||||||
ValGluThrSerCysSerGln++ ++CysGlyAl
216088 : GTGGAAACGAGCTGCTCTCAGgt.........................agTGCGGCGC : 208117
141 : aHisLeuGlyHisIlePheAspAspGlyProArgProThrGlyLysArgTyrCysIle : 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
aHisLeuGlyHisIlePheAspAspGlyProArgProThrGlyLysArgTyrCysIle
208116 : CCACCTTGGGCACATTTTCGATGACGGCCCTCGTCCCACCGGCAAAAGATACTGCATA : 208060
160 : AsnSerAlaAlaLeuSerPheThrProAlaAspSerSerGlyThrAlaGluGlyGlyS : 179
|||||||||:!!|||||||||||||||||||||.!!|||||| |||:!!|||||||
AsnSerAlaSerLeuSerPheThrProAlaAspGlySerGly---AlaGlnGlyGlyS
208059 : AACTCGGCTTCCTTGTCCTTCACGCCAGCAGACGGCAGTGGT---GCCCAGGGGGGCA : 208003
180 : erGlyValAlaSerProAlaGlnAlaAspLysAlaGluLeu : 192
||||||||!.!|||||||||! ||||||||||||||||||
erGlyValGlySerProAlaProAlaAspLysAlaGluLeu
208002 : GTGGGGTGGGCAGCCCGGCCCCCGCGGACAAAGCGGAGCTG : 207962
vulgar: SPP00000092_2.0 0 192 . gi|472269653|gb|KB715036.1| 370528 207961 - 895 M 14 42 G 2 0 M 16 48 S 0 1 5 0 2 I 0 47405 3 0 2 S 1 2 M 35 105 S 0 2 5 0 2 I 0 1647 3 0 2 S 1 1 M 25 75 S 0 2 5 0 2 I 0 31308 3 0 2 S 1 1 M 9 27 S 0 1 5 0 2 I 0 73682 3 0 2 S 1 2 M 32 96 5 0 2 I 0 7938 3 0 2 M 36 108 G 1 0 M 18 54
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local gene 207962 370528 895 - . gene_id 1 ; sequence SPP00000092_2.0 ; gene_orientation +
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local cds 370438 370528 . - .
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local exon 370438 370528 . - . insertions 0 ; deletions 2
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local splice5 370436 370437 . - . intron_id 1 ; splice_site "GT"
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local intron 323029 370437 . - . intron_id 1
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local splice3 323029 323030 . - . intron_id 0 ; splice_site "AG"
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local cds 322920 323028 . - .
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local exon 322920 323028 . - . insertions 0 ; deletions 0
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local splice5 322918 322919 . - . intron_id 2 ; splice_site "GT"
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local intron 321269 322919 . - . intron_id 2
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local splice3 321269 321270 . - . intron_id 1 ; splice_site "AG"
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local cds 321191 321268 . - .
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local exon 321191 321268 . - . insertions 0 ; deletions 0
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local splice5 321189 321190 . - . intron_id 3 ; splice_site "GT"
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local intron 289879 321190 . - . intron_id 3
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local splice3 289879 289880 . - . intron_id 2 ; splice_site "AG"
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local cds 289850 289878 . - .
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local exon 289850 289878 . - . insertions 0 ; deletions 0
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local splice5 289848 289849 . - . intron_id 4 ; splice_site "GT"
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local intron 216164 289849 . - . intron_id 4
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local splice3 216164 216165 . - . intron_id 3 ; splice_site "AG"
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local cds 216066 216163 . - .
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local exon 216066 216163 . - . insertions 0 ; deletions 0
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local splice5 216064 216065 . - . intron_id 5 ; splice_site "GT"
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local intron 208124 216065 . - . intron_id 5
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local splice3 208124 208125 . - . intron_id 4 ; splice_site "AG"
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local cds 207962 208123 . - .
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local exon 207962 208123 . - . insertions 0 ; deletions 1
gi|472269653|gb|KB715036.1| exonerate:protein2genome:local similarity 207962 370528 895 - . alignment_id 1 ; Query SPP00000092_2.0 ; Align 370529 1 42 ; Align 370487 17 48 ; Align 323027 34 105 ; Align 321268 70 75 ; Align 289878 96 27 ; Align 216162 106 96 ; Align 208124 138 108 ; Align 208016 175 54
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis