TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000092_2.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Human (Homo sapiens)
(192 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472269653|gb|KB715036.1| Leptonychotes weddellii isolate WS11... 105 2e-21
gi|472268443|gb|KB716214.1| Leptonychotes weddellii isolate WS11... 45 1e-06
gi|472266029|gb|KB718628.1| Leptonychotes weddellii isolate WS11... 56 1e-06
gi|472264504|gb|KB720153.1| Leptonychotes weddellii isolate WS11... 43 0.011
gi|472269939|gb|KB714750.1| Leptonychotes weddellii isolate WS11... 34 4.9
gi|472267215|gb|KB717442.1| Leptonychotes weddellii isolate WS11... 33 6.4
gi|472269404|gb|KB715285.1| Leptonychotes weddellii isolate WS11... 33 8.4
>gi|472269653|gb|KB715036.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00330, whole genome
shotgun sequence
Length = 1601259
Score = 105 bits (261), Expect = 2e-21
Identities = 50/56 (89%), Positives = 52/56 (92%)
Frame = -3
Query: 137 QCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVASPAQADKAEL 192
QCGAHLGHIFDDGPRPTGKRYCINSA+LSFTPAD SG A+GGSGV SPA ADKAEL
Sbjct: 208126 QCGAHLGHIFDDGPRPTGKRYCINSASLSFTPADGSG-AQGGSGVGSPAPADKAEL 207962
Score = 73.6 bits (179), Expect = 6e-12
Identities = 32/36 (88%), Positives = 34/36 (94%)
Frame = -2
Query: 102 SGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQ 137
S GWPSFHDVI+S+AITFTDDFSYGMHRVETSCSQ
Sbjct: 216173 SAPGWPSFHDVISSDAITFTDDFSYGMHRVETSCSQ 216066
Score = 71.2 bits (173), Expect = 3e-11
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = -3
Query: 36 RDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE 68
RDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE
Sbjct: 323020 RDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE 322922
Score = 65.1 bits (157), Expect = 2e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -1
Query: 69 SAFEGEYTHHKDPGIYKCVVCGTPLFK 95
SAFEGEYTHHKDPGIYKCVVCGTPLFK
Sbjct: 321270 SAFEGEYTHHKDPGIYKCVVCGTPLFK 321190
>gi|472268443|gb|KB716214.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01508, whole genome
shotgun sequence
Length = 623900
Score = 45.1 bits (105), Expect(2) = 1e-06
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +1
Query: 58 QYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEA 117
+++V +EKG E F G H + G CV+ LF SE K++SG+GWPSF + +
Sbjct: 43582 KFYVMREKGRELPFGGINPHSTESGGMLCVL*WL-LFCSERKYNSGTGWPSFSE---AHG 43749
Query: 118 ITFTDDFSYGM-HRVETSCSQ 137
++ + + S G+ R +TS +Q
Sbjct: 43750 MSGSGESSAGLPRRADTSQNQ 43812
Score = 30.4 bits (67), Expect(2) = 1e-06
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 150 PRPTGKRYCINSAALSFTP 168
P PTG+R+CI S AL F P
Sbjct: 43853 PGPTGQRFCIPSVALKFQP 43909
>gi|472266029|gb|KB718628.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold03922, whole genome
shotgun sequence
Length = 182919
Score = 55.8 bits (133), Expect = 1e-06
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 137 QCGAHLGHIFDDGPRPTGKRYCINSAALSFTP 168
QC AHLGH+F DGP P+G+R+CINS AL F P
Sbjct: 132602 QCEAHLGHVFPDGPGPSGQRFCINSVALKFKP 132697
Score = 34.3 bits (77), Expect = 3.8
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 71 FEGEYTHHKDPGIYKCVVCGTPLFK 95
F G Y ++K+ G+Y CV C +PLF+
Sbjct: 125992 FSGVYLNNKESGMYHCVCCDSPLFR 126066
>gi|472264504|gb|KB720153.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold05448, whole genome
shotgun sequence
Length = 79701
Score = 42.7 bits (99), Expect = 0.011
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 81 PGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAI 118
PG+Y C CG LF S +K+ S WP+F + I+++++
Sbjct: 13937 PGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSV 14050
Score = 38.5 bits (88), Expect = 0.20
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 132 ETSCSQCGAHLGHIF-DDGPRPTGKRYCINSAALSFTP 168
+ SC +CG LGH F +DGP+P R+ I S++L F P
Sbjct: 14301 QVSCGKCGNGLGHEFLNDGPKPGQSRF*IFSSSLKFIP 14414
>gi|472269939|gb|KB714750.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00044, whole genome
shotgun sequence
Length = 4121101
Score = 33.9 bits (76), Expect = 4.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 104 SGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIF 146
+ WPS H + AI F+ F+Y H + QCG + G F
Sbjct: 2028796 AAWPS*HMKLTITAICFSSTFAY*QHSINQGGGQCG*YTGQRF 2028924
>gi|472267215|gb|KB717442.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02736, whole genome
shotgun sequence
Length = 357009
Score = 33.5 bits (75), Expect = 6.4
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 152 PTGKRYCINSAALSFTPADSSGTAEGGSGVASPAQADKAEL 192
P G+ C + ALSF P D S + GS VA P A E+
Sbjct: 317049 PGGESLCAKATALSFAPGDPSPLVKTGSRVAIPRGAHSLEV 317171
>gi|472269404|gb|KB715285.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00579, whole genome
shotgun sequence
Length = 1188679
Score = 33.1 bits (74), Expect = 8.4
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +2
Query: 69 SAFEGE-YTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYG 127
S F GE + +H +P +Y C LF S +K + + +F + ++++ + + +
Sbjct: 706712 SFFGGEVFENHFEPLVYVCTKYDYELFFSCSKCEHMA---AFTETMHADRVAKHQEHNTP 706882
Query: 128 MHRVETSCSQCGAHLGHIF-DDGPRP 152
++ C CG LGH F +DGP+P
Sbjct: 706883 -EALKGPCGMCGHGLGHEFLNDGPKP 706957
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.316 0.132 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 697,367,363
Number of Sequences: 16710
Number of extensions: 10989121
Number of successful extensions: 42134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 440
Number of HSP's that attempted gapping in prelim test: 38881
Number of HSP's gapped (non-prelim): 9289
length of query: 192
length of database: 1,052,295,386
effective HSP length: 125
effective length of query: 67
effective length of database: 1,050,206,636
effective search space: 70363844612
effective search space used: 70363844612
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 73 (32.7 bits)