Command line: [exonerate -m p2g --showtargetgff -q ./SelR2.fa -t SelR2.carpeta/genomic.fa] Hostname: [ws116037] C4 Alignment: ------------ Query: SPP00000091_2.0 # Protein # Methionine-R-sufoxide reductase 2 (SelR2) # Human (Homo sapiens) Target: gi|472266029|gb|KB718628.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold03922, whole genome shotgun sequence Model: protein2genome:local Raw score: 660 Query range: 35 -> 182 Target range: 121703 -> 132706 36 : LeuGlyGluAlaGlySerLeuAlaThrCysGluLeuProLeuAlaLysSerGluTrpG : 55 |||..!.!..!!||||||||| !!! ! !! !! ! !!|||.!!||||||||||||| LeuAsnHisThrGlySerLeuProLysHisGlyProSerLeuThrLysSerGluTrpG 121704 : TTGAACCACACAGGGTCTCTCCCAAAGCATGGGCCGTCTCTCACCAAGAGTGAATGGC : 121761 56 : lnLysLysLeuThrProGluGlnPheTyrValThrArgGluLysGlyThrGluPro : 74 ||||||||||||||||||||||||||||||||||||||||||||||||||||| !! lnLysLysLeuThrProGluGlnPheTyrValThrArgGluLysGlyThrGluAla++ 121762 : AAAAGAAGCTGACTCCAGAGCAGTTCTATGTTACGAGAGAAAAAGGAACCGAAGCGgt : 121818 75 : >>>> Target Intron 1 >>>> ProPheSerGlyIleTyrLeuAsnAsnLysG : 84 4171 bp ||||||||||||:!!|||||||||||||||| ++ProPheSerGlyValTyrLeuAsnAsnLysG 121819 : .........................agCCTTTCAGTGGGGTCTATCTGAATAACAAGG : 126019 85 : luAlaGlyMetTyrHisCysValCysCysAspSerProLeuPhe{Se} >>>> Tar : 99 ||:!!|||||||||||||||||||||||||||||||||||||||{||} luSerGlyMetTyrHisCysValCysCysAspSerProLeuPhe{Se}++ 126020 : AATCAGGAATGTATCACTGTGTGTGCTGTGACAGCCCACTCTTC{AG}gt........ : 126068 100 : get Intron 2 >>>> {r}SerGluLysLysTyrCysSerGlyThrGlyTrpPro : 111 5250 bp {|}|||||||||||||||||||||.!!|||||||||||| ++{r}SerGluLysLysTyrCysSerSerThrGlyTrpPro 126069 : .................ag{T}TCCGAGAAAAAGTACTGCTCCAGCACCGGGTGGCCT : 131350 112 : SerPheSerGluAlaHisGlyThrSerGlySerAspGluSerHisThrGlyIleLeuA : 131 :!!|||||||||!.!||||||.!!|||||||||||||||!!! !!.!!|||||||||| AlaPheSerGluValHisGlyAlaSerGlySerAspGluArgAspAlaGlyIleLeuA 131351 : GCCTTCTCGGAGGTGCACGGGGCGTCTGGCTCTGATGAAAGGGACGCGGGCATCCTGA : 131410 132 : rgArgLeuAspThrSerLeuGlySerAlaArgThrGluValValCysLysGln >>> : 149 |||||:!!|||||||||||||||! !.!!|||||||||||||||||||||||| rgArgValAspThrSerLeuGlyLeuThrArgThrGluValValCysLysGln++ 131411 : GACGTGTGGACACCTCATTAGGATTAACTCGCACCGAGGTTGTCTGCAAGCAGgt... : 131466 150 : > Target Intron 3 >>>> CysGluAlaHisLeuGlyHisValPheProAspG : 160 1141 bp |||||||||||||||||||||||||||||||||| ++CysGluAlaHisLeuGlyHisValPheProAspG 131467 : ......................agTGTGAAGCCCATCTTGGCCACGTGTTTCCTGATG : 132638 161 : lyProGlyProAsnGlyGlnArgPheCysIleAsnSerValAlaLeuLysPheLysPr : 179 |||||||||||!:!|||||||||||||||||||||||||||||||||||||||||||| lyProGlyProSerGlyGlnArgPheCysIleAsnSerValAlaLeuLysPheLysPr 132639 : GACCTGGGCCTAGTGGTCAGAGGTTTTGCATCAACAGTGTGGCCCTGAAGTTCAAACC : 132695 180 : oArgLysHis : 182 |||||||||| oArgLysHis 132696 : AAGGAAACAC : 132706 vulgar: SPP00000091_2.0 35 182 . gi|472266029|gb|KB718628.1| 121703 132706 + 660 M 38 114 5 0 2 I 0 4167 3 0 2 M 25 75 S 0 2 5 0 2 I 0 5246 3 0 2 S 1 1 M 49 147 5 0 2 I 0 1137 3 0 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2013-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # gi|472266029|gb|KB718628.1| exonerate:protein2genome:local gene 121704 132706 660 + . gene_id 1 ; sequence SPP00000091_2.0 ; gene_orientation + gi|472266029|gb|KB718628.1| exonerate:protein2genome:local cds 121704 121817 . + . gi|472266029|gb|KB718628.1| exonerate:protein2genome:local exon 121704 121817 . + . insertions 0 ; deletions 0 gi|472266029|gb|KB718628.1| exonerate:protein2genome:local splice5 121818 121819 . + . intron_id 1 ; splice_site "GT" gi|472266029|gb|KB718628.1| exonerate:protein2genome:local intron 121818 125988 . + . intron_id 1 gi|472266029|gb|KB718628.1| exonerate:protein2genome:local splice3 125987 125988 . + . intron_id 0 ; splice_site "AG" gi|472266029|gb|KB718628.1| exonerate:protein2genome:local cds 125989 126065 . + . gi|472266029|gb|KB718628.1| exonerate:protein2genome:local exon 125989 126065 . + . insertions 0 ; deletions 0 gi|472266029|gb|KB718628.1| exonerate:protein2genome:local splice5 126066 126067 . + . intron_id 2 ; splice_site "GT" gi|472266029|gb|KB718628.1| exonerate:protein2genome:local intron 126066 131315 . + . intron_id 2 gi|472266029|gb|KB718628.1| exonerate:protein2genome:local splice3 131314 131315 . + . intron_id 1 ; splice_site "AG" gi|472266029|gb|KB718628.1| exonerate:protein2genome:local cds 131316 131463 . + . gi|472266029|gb|KB718628.1| exonerate:protein2genome:local exon 131316 131463 . + . insertions 0 ; deletions 0 gi|472266029|gb|KB718628.1| exonerate:protein2genome:local splice5 131464 131465 . + . intron_id 3 ; splice_site "GT" gi|472266029|gb|KB718628.1| exonerate:protein2genome:local intron 131464 132604 . + . intron_id 3 gi|472266029|gb|KB718628.1| exonerate:protein2genome:local splice3 132603 132604 . + . intron_id 2 ; splice_site "AG" gi|472266029|gb|KB718628.1| exonerate:protein2genome:local cds 132605 132706 . + . gi|472266029|gb|KB718628.1| exonerate:protein2genome:local exon 132605 132706 . + . insertions 0 ; deletions 0 gi|472266029|gb|KB718628.1| exonerate:protein2genome:local similarity 121704 132706 660 + . alignment_id 1 ; Query SPP00000091_2.0 ; Align 121704 36 114 ; Align 125989 74 75 ; Align 131317 100 147 ; Align 132605 149 102 # --- END OF GFF DUMP --- # -- completed exonerate analysis