Command line: [exonerate -m p2g --showtargetgff -q ./SelR2.fa -t SelR2.carpeta/genomic.fa]
Hostname: [ws116037]

C4 Alignment:
------------
         Query: SPP00000091_2.0 # Protein # Methionine-R-sufoxide reductase 2 (SelR2) # Human (Homo sapiens)
        Target: gi|472266029|gb|KB718628.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold03922, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 660
   Query range: 35 -> 182
  Target range: 121703 -> 132706

     36 : LeuGlyGluAlaGlySerLeuAlaThrCysGluLeuProLeuAlaLysSerGluTrpG :     55
          |||..!.!..!!||||||||| !!! !  !! !! ! !!|||.!!|||||||||||||
          LeuAsnHisThrGlySerLeuProLysHisGlyProSerLeuThrLysSerGluTrpG
 121704 : TTGAACCACACAGGGTCTCTCCCAAAGCATGGGCCGTCTCTCACCAAGAGTGAATGGC : 121761

     56 : lnLysLysLeuThrProGluGlnPheTyrValThrArgGluLysGlyThrGluPro   :     74
          ||||||||||||||||||||||||||||||||||||||||||||||||||||| !!  
          lnLysLysLeuThrProGluGlnPheTyrValThrArgGluLysGlyThrGluAla++
 121762 : AAAAGAAGCTGACTCCAGAGCAGTTCTATGTTACGAGAGAAAAAGGAACCGAAGCGgt : 121818

     75 : >>>> Target Intron 1 >>>>  ProPheSerGlyIleTyrLeuAsnAsnLysG :     84
                   4171 bp           ||||||||||||:!!||||||||||||||||
                                   ++ProPheSerGlyValTyrLeuAsnAsnLysG
 121819 : .........................agCCTTTCAGTGGGGTCTATCTGAATAACAAGG : 126019

     85 : luAlaGlyMetTyrHisCysValCysCysAspSerProLeuPhe{Se}  >>>> Tar :     99
          ||:!!|||||||||||||||||||||||||||||||||||||||{||}          
          luSerGlyMetTyrHisCysValCysCysAspSerProLeuPhe{Se}++        
 126020 : AATCAGGAATGTATCACTGTGTGTGCTGTGACAGCCCACTCTTC{AG}gt........ : 126068

    100 : get Intron 2 >>>>  {r}SerGluLysLysTyrCysSerGlyThrGlyTrpPro :    111
           5250 bp           {|}|||||||||||||||||||||.!!||||||||||||
                           ++{r}SerGluLysLysTyrCysSerSerThrGlyTrpPro
 126069 : .................ag{T}TCCGAGAAAAAGTACTGCTCCAGCACCGGGTGGCCT : 131350

    112 : SerPheSerGluAlaHisGlyThrSerGlySerAspGluSerHisThrGlyIleLeuA :    131
          :!!|||||||||!.!||||||.!!|||||||||||||||!!! !!.!!||||||||||
          AlaPheSerGluValHisGlyAlaSerGlySerAspGluArgAspAlaGlyIleLeuA
 131351 : GCCTTCTCGGAGGTGCACGGGGCGTCTGGCTCTGATGAAAGGGACGCGGGCATCCTGA : 131410

    132 : rgArgLeuAspThrSerLeuGlySerAlaArgThrGluValValCysLysGln  >>> :    149
          |||||:!!|||||||||||||||! !.!!||||||||||||||||||||||||     
          rgArgValAspThrSerLeuGlyLeuThrArgThrGluValValCysLysGln++   
 131411 : GACGTGTGGACACCTCATTAGGATTAACTCGCACCGAGGTTGTCTGCAAGCAGgt... : 131466

    150 : > Target Intron 3 >>>>  CysGluAlaHisLeuGlyHisValPheProAspG :    160
                1141 bp           ||||||||||||||||||||||||||||||||||
                                ++CysGluAlaHisLeuGlyHisValPheProAspG
 131467 : ......................agTGTGAAGCCCATCTTGGCCACGTGTTTCCTGATG : 132638

    161 : lyProGlyProAsnGlyGlnArgPheCysIleAsnSerValAlaLeuLysPheLysPr :    179
          |||||||||||!:!||||||||||||||||||||||||||||||||||||||||||||
          lyProGlyProSerGlyGlnArgPheCysIleAsnSerValAlaLeuLysPheLysPr
 132639 : GACCTGGGCCTAGTGGTCAGAGGTTTTGCATCAACAGTGTGGCCCTGAAGTTCAAACC : 132695

    180 : oArgLysHis :    182
          ||||||||||
          oArgLysHis
 132696 : AAGGAAACAC : 132706

vulgar: SPP00000091_2.0 35 182 . gi|472266029|gb|KB718628.1| 121703 132706 + 660 M 38 114 5 0 2 I 0 4167 3 0 2 M 25 75 S 0 2 5 0 2 I 0 5246 3 0 2 S 1 1 M 49 147 5 0 2 I 0 1137 3 0 2 M 34 102
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	gene	121704	132706	660	+	.	gene_id 1 ; sequence SPP00000091_2.0 ; gene_orientation +
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	cds	121704	121817	.	+	.	
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	exon	121704	121817	.	+	.	insertions 0 ; deletions 0
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	splice5	121818	121819	.	+	.	intron_id 1 ; splice_site "GT"
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	intron	121818	125988	.	+	.	intron_id 1
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	splice3	125987	125988	.	+	.	intron_id 0 ; splice_site "AG"
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	cds	125989	126065	.	+	.	
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	exon	125989	126065	.	+	.	insertions 0 ; deletions 0
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	splice5	126066	126067	.	+	.	intron_id 2 ; splice_site "GT"
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	intron	126066	131315	.	+	.	intron_id 2
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	splice3	131314	131315	.	+	.	intron_id 1 ; splice_site "AG"
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	cds	131316	131463	.	+	.	
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	exon	131316	131463	.	+	.	insertions 0 ; deletions 0
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	splice5	131464	131465	.	+	.	intron_id 3 ; splice_site "GT"
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	intron	131464	132604	.	+	.	intron_id 3
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	splice3	132603	132604	.	+	.	intron_id 2 ; splice_site "AG"
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	cds	132605	132706	.	+	.	
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	exon	132605	132706	.	+	.	insertions 0 ; deletions 0
gi|472266029|gb|KB718628.1|	exonerate:protein2genome:local	similarity	121704	132706	660	+	.	alignment_id 1 ; Query SPP00000091_2.0 ; Align 121704 36 114 ; Align 125989 74 75 ; Align 131317 100 147 ; Align 132605 149 102
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis