TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000091_2.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Human (Homo sapiens)
(182 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472266029|gb|KB718628.1| Leptonychotes weddellii isolate WS11... 87 3e-16
gi|472268443|gb|KB716214.1| Leptonychotes weddellii isolate WS11... 85 2e-15
gi|472269653|gb|KB715036.1| Leptonychotes weddellii isolate WS11... 54 3e-06
gi|472269807|gb|KB714882.1| Leptonychotes weddellii isolate WS11... 37 0.67
gi|472264504|gb|KB720153.1| Leptonychotes weddellii isolate WS11... 36 1.1
gi|472268183|gb|KB716474.1| Leptonychotes weddellii isolate WS11... 35 2.0
gi|472264148|gb|KB720509.1| Leptonychotes weddellii isolate WS11... 35 2.5
gi|472268108|gb|KB716549.1| Leptonychotes weddellii isolate WS11... 35 2.5
gi|472269221|gb|KB715436.1| Leptonychotes weddellii isolate WS11... 34 4.3
gi|472269637|gb|KB715052.1| Leptonychotes weddellii isolate WS11... 33 9.7
>gi|472266029|gb|KB718628.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold03922, whole genome
shotgun sequence
Length = 182919
Score = 87.4 bits (215), Expect = 3e-16
Identities = 40/50 (80%), Positives = 42/50 (84%)
Frame = +1
Query: 99 SSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQ 148
SSEKKYCS TGWP+FSE HG SGSDE GILRR+DTSLG RTEVVCKQ
Sbjct: 131314 SSEKKYCSSTGWPAFSEVHGASGSDERDAGILRRVDTSLGLTRTEVVCKQ 131463
Score = 80.5 bits (197), Expect = 4e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +2
Query: 148 QCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRKH 182
QCEAHLGHVFPDGPGP+GQRFCINSVALKFKPRKH
Sbjct: 132602 QCEAHLGHVFPDGPGPSGQRFCINSVALKFKPRKH 132706
Score = 60.5 bits (145), Expect = 4e-08
Identities = 26/41 (63%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Frame = +1
Query: 74 PFSGIYLNNKEAGMYHCVCCDSPLFS-SEKKYCSGTGWPSF 113
PFSG+YLNNKE+GMYHCVCCDSPLF ++ G P F
Sbjct: 125989 PFSGVYLNNKESGMYHCVCCDSPLFR*GSREVLKENGPPDF 126111
Score = 52.0 bits (123), Expect = 2e-05
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +3
Query: 49 LAKSEWQKKLTPEQFYVTREKGTE 72
L KSEWQKKLTPEQFYVTREKGTE
Sbjct: 121743 LTKSEWQKKLTPEQFYVTREKGTE 121814
>gi|472268443|gb|KB716214.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01508, whole genome
shotgun sequence
Length = 623900
Score = 85.1 bits (209), Expect = 2e-15
Identities = 47/88 (53%), Positives = 55/88 (62%)
Frame = +1
Query: 62 QFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSG 121
+FYV REKG E PF GI ++ E+G CV LF SE+KY SGTGWPSFSEAHG SG
Sbjct: 43582 KFYVMREKGRELPFGGINPHSTESGGMLCVL*WL-LFCSERKYNSGTGWPSFSEAHGMSG 43758
Query: 122 SDESHTGILRRLDTSLGSARTEVVCKQC 149
S ES G+ RR DTS ++ C
Sbjct: 43759 SGESSAGLPRRADTSQNQLA*RLLAPMC 43842
Score = 47.4 bits (111), Expect = 4e-04
Identities = 38/96 (39%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = +2
Query: 90 CVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQC 149
CVCCD CS S + A G S TG L + GS R ++
Sbjct: 43664 CVCCDG---------CSSVLRESTTLALGGLPSLRL-TGCLALVKVVQGS-RDVRTPRRI 43810
Query: 150 EAHLGHVFP---DGPGPNGQRFCINSVALKFKPRKH 182
+H G P PGP GQRFCI SVALKF+PR+H
Sbjct: 43811 SSHRGCWHPCVSGWPGPTGQRFCIPSVALKFQPRRH 43918
>gi|472269653|gb|KB715036.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00330, whole genome
shotgun sequence
Length = 1601259
Score = 54.3 bits (129), Expect = 3e-06
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = -3
Query: 148 QCEAHLGHVFPDGPGPNGQRFCINSVALKFKP 179
QC AHLGH+F DGP P G+R+CINS +L F P
Sbjct: 208126 QCGAHLGHIFDDGPRPTGKRYCINSASLSFTP 208031
Score = 35.8 bits (81), Expect = 1.1
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = -3
Query: 45 CELPLAKSEWQKKLTPEQFYVTREKGTE 72
C++ ++ E +K+LTP Q++VT+EKGTE
Sbjct: 323005 CKVVFSQQELRKRLTPLQYHVTQEKGTE 322922
Score = 33.1 bits (74), Expect = 7.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 75 FSGIYLNNKEAGMYHCVCCDSPLF 98
F G Y ++K+ G+Y CV C +PLF
Sbjct: 321264 FEGEYTHHKDPGIYKCVVCGTPLF 321193
>gi|472269807|gb|KB714882.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00176, whole genome
shotgun sequence
Length = 2148545
Score = 36.6 bits (83), Expect = 0.67
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = -3
Query: 48 PLAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPL 97
P EW+KK+ P Q + +E P G EA Y CVCC S L
Sbjct: 589131 PEQLQEWEKKMGPRQMELDQEMDRNPALVGA-----EAVTYFCVCCPSSL 588997
>gi|472264504|gb|KB720153.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold05448, whole genome
shotgun sequence
Length = 79701
Score = 35.8 bits (81), Expect = 1.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 86 GMYHCVCCDSPLFSSEKKYCSGTGWPSFSE 115
G+Y C C LFSS KY + WP+F+E
Sbjct: 13940 GVYVCAKCGYELFSSRSKYAHSSPWPAFTE 14029
Score = 34.3 bits (77), Expect = 3.3
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 143 EVVCKQCEAHLGHVF-PDGPGPNGQRFCINSVALKFKPR 180
+V C +C LGH F DGP P RF I S +LKF P+
Sbjct: 14301 QVSCGKCGNGLGHEFLNDGPKPGQSRF*IFSSSLKFIPK 14417
>gi|472268183|gb|KB716474.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01768, whole genome
shotgun sequence
Length = 560258
Score = 35.0 bits (79), Expect = 2.0
Identities = 13/40 (32%), Positives = 27/40 (67%)
Frame = -3
Query: 75 FSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFS 114
++ ++L ++ G+ C+C D+P S+E+ CSG+G +F+
Sbjct: 410367 YNPVWLRSRNTGV*VCLCPDAPWSSAERSGCSGSGVSTFA 410248
>gi|472264148|gb|KB720509.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold05804, whole genome
shotgun sequence
Length = 52270
Score = 34.7 bits (78), Expect = 2.5
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -2
Query: 108 TGWPSFSEAHGTS---GSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPG 162
+GWP G S G DES GILRR A ++ +C+ H+ H P GPG
Sbjct: 38403 SGWPLTVPQIGVSEVEGPDESREGILRR-------ASLDLALYRCQLHVLHPRPLGPG 38251
>gi|472268108|gb|KB716549.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01843, whole genome
shotgun sequence
Length = 517624
Score = 34.7 bits (78), Expect = 2.5
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Frame = +2
Query: 51 KSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGW 110
K W++K E+F T K P+S I+ N AGM H C S TGW
Sbjct: 247856 KGTWKRKKNNEKF--T**KSDLKPYSHIFQNIDLAGMKHYNCHSQLFLK*SNLALSLTGW 248029
Query: 111 PSF---SEAHGTSGSDESHTGILRRLDTSL 137
SF ++ H T+ + G +D S+
Sbjct: 248030 NSFLATNQCHVTTAGGDIPLGPGEPMDVSI 248119
>gi|472269221|gb|KB715436.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00730, whole genome
shotgun sequence
Length = 1152473
Score = 33.9 bits (76), Expect = 4.3
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = -2
Query: 102 KKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCK 147
K C G GW +E G +GS ES LR T R E C+
Sbjct: 687889 KLQCQGRGWLLLAEDLGQNGSGESQVSALRDPSTCFTGTRAETDCR 687752
>gi|472269637|gb|KB715052.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00346, whole genome
shotgun sequence
Length = 1563357
Score = 32.7 bits (73), Expect = 9.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 79 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGW 110
YL ++ GM+ C CC SP +C G GW
Sbjct: 1277531 YLTSELCGMHPCGCCISPGMHGSGGWC*GLGW 1277436
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.317 0.134 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 718,228,284
Number of Sequences: 16710
Number of extensions: 12114860
Number of successful extensions: 56474
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 719
Number of HSP's that attempted gapping in prelim test: 50376
Number of HSP's gapped (non-prelim): 16766
length of query: 182
length of database: 1,052,295,386
effective HSP length: 123
effective length of query: 59
effective length of database: 1,050,240,056
effective search space: 61964163304
effective search space used: 61964163304
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)