TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000087_2.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Human (Homo sapiens)
         (116 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472269404|gb|KB715285.1| Leptonychotes weddellii isolate WS11...   137   9e-32
gi|472264504|gb|KB720153.1| Leptonychotes weddellii isolate WS11...   105   7e-22
gi|472269653|gb|KB715036.1| Leptonychotes weddellii isolate WS11...    36   0.37 
gi|472269796|gb|KB714893.1| Leptonychotes weddellii isolate WS11...    36   0.48 
gi|472267780|gb|KB716877.1| Leptonychotes weddellii isolate WS11...    33   3.1  
gi|472268663|gb|KB715994.1| Leptonychotes weddellii isolate WS11...    33   3.1  
gi|472269629|gb|KB715060.1| Leptonychotes weddellii isolate WS11...    32   5.4  
gi|472269697|gb|KB714992.1| Leptonychotes weddellii isolate WS11...    32   5.4  
gi|472267330|gb|KB717327.1| Leptonychotes weddellii isolate WS11...    32   7.0  
gi|472266029|gb|KB718628.1| Leptonychotes weddellii isolate WS11...    32   9.1  
gi|472267943|gb|KB716714.1| Leptonychotes weddellii isolate WS11...    32   9.1  

>gi|472269404|gb|KB715285.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00579, whole genome
              shotgun sequence
          Length = 1188679

 Score =  137 bits (346), Expect = 9e-32
 Identities = 71/116 (61%), Positives = 78/116 (67%)
 Frame = +2

Query: 1      MSFCSFFGGEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPE 60
              MSF SFFGGEVF+NHFEP VYVC K  YELF S SK  H +   AFTET+HAD VAK  E
Sbjct: 706700 MSFYSFFGGEVFENHFEPLVYVCTKYDYELFFSCSKCEHMA---AFTETMHADRVAKHQE 706870

Query: 61     HNRSEALKVSCGKCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKGKETSASQGH 116
              HN  EALK  CG CG+GLGHEFLNDGPKPGQS     ++      K KE    + H
Sbjct: 706871 HNTPEALKGPCGMCGHGLGHEFLNDGPKPGQSASEYLATC*SSAGKAKELLPLRSH 707038


>gi|472264504|gb|KB720153.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold05448, whole genome
             shotgun sequence
          Length = 79701

 Score =  105 bits (261), Expect = 7e-22
 Identities = 51/62 (82%), Positives = 53/62 (85%)
 Frame = +2

Query: 18    PGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNG 77
             PGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAK PE N +EALKV     G+G
Sbjct: 13937 PGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKCPERNSTEALKVG-SAAGDG 14113

Query: 78    LG 79
              G
Sbjct: 14114 EG 14119



 Score = 85.1 bits (209), Expect = 7e-16
 Identities = 38/43 (88%), Positives = 41/43 (95%)
 Frame = +3

Query: 68    KVSCGKCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKGKET 110
             +VSCGKCGNGLGHEFLNDGPKPGQSRF IFSSSLKF+PKG+ T
Sbjct: 14301 QVSCGKCGNGLGHEFLNDGPKPGQSRF*IFSSSLKFIPKGELT 14429



 Score = 47.4 bits (111), Expect = 2e-04
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = +1

Query: 1     MSFCSFFGGEVFQNHFEPGV 20
             MSFCSFFGGEVFQNHFEPG+
Sbjct: 12313 MSFCSFFGGEVFQNHFEPGM 12372


>gi|472269653|gb|KB715036.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00330, whole genome
              shotgun sequence
          Length = 1601259

 Score = 36.2 bits (82), Expect = 0.37
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = -3

Query: 73     KCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKGKETSASQG 115
              +CG  LGH F +DGP+P   R+ I S+SL F P   + S +QG
Sbjct: 208126 QCGAHLGHIF-DDGPRPTGKRYCINSASLSFTP--ADGSGAQG 208007



 Score = 31.6 bits (70), Expect = 9.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 3      FCSFFGGEVFQNHFEPGVYVCAKCGYELF 31
              F S F GE + +H +PG+Y C  CG  LF
Sbjct: 321276 FISAFEGE-YTHHKDPGIYKCVVCGTPLF 321193


>gi|472269796|gb|KB714893.1| Leptonychotes weddellii isolate WS11-02
               unplaced genomic scaffold scaffold00187, whole genome
               shotgun sequence
          Length = 1903971

 Score = 35.8 bits (81), Expect = 0.48
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 32      SSRSKYAHSSP-WPAFTETIHADSVA---KRPEHNRSEALKVSCGKCGNGLGHEFLNDGP 87
               SSR +   S P WP  T +     +A   +RP  +RS A  ++C +C  G    + +  P
Sbjct: 1718535 SSRERGPESGPGWPTITSSSSPRELATRRRRPSRSRSRACSITCSRCSKGAWGRWAS-SP 1718711

Query: 88      KPGQSR 93
               +P + R
Sbjct: 1718712 RPWEQR 1718729


>gi|472267780|gb|KB716877.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold02171, whole genome
              shotgun sequence
          Length = 444903

 Score = 33.1 bits (74), Expect = 3.1
 Identities = 23/74 (31%), Positives = 29/74 (39%)
 Frame = +2

Query: 40     SSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQSRFXIFSS 99
              S P P  T T HA++  +            SCG+ G     +    GP PG SR  +F  
Sbjct: 180368 SQPRPGGTHTSHAEARCEVAGPRFGSPGSRSCGQRGQPHRSDCTGQGPLPGSSRCFLFCE 180547

Query: 100    SLKFVPKGKETSAS 113
              SL   P      AS
Sbjct: 180548 SLLRKPSTAYCPAS 180589


>gi|472268663|gb|KB715994.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold01288, whole genome
              shotgun sequence
          Length = 687634

 Score = 33.1 bits (74), Expect = 3.1
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 37     YAHSSPWPAFTETIHADSVAKRPEHNR-SEALKVSCGKCGNGLG 79
              Y+H  P    T++ H+ S + +PE  R S+A +V   +CG+GLG
Sbjct: 606061 YSHLLPKHGSTDSTHSLSTSSKPELQRHSKAPRVLTHRCGHGLG 606192


>gi|472269629|gb|KB715060.1| Leptonychotes weddellii isolate WS11-02
               unplaced genomic scaffold scaffold00354, whole genome
               shotgun sequence
          Length = 1664468

 Score = 32.3 bits (72), Expect = 5.4
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +3

Query: 17      EPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGN 76
               EP V +CA  G    S+   ++ S+P P            +R EH++ +  KV   KCG 
Sbjct: 1284903 EPRVGLCAGGGAGGESA*DSFSSSAPHPISLRRRRT----RRKEHDKGKVSKVIQ*KCGE 1285070

Query: 77      GLGH 80
                LGH
Sbjct: 1285071 ALGH 1285082


>gi|472269697|gb|KB714992.1| Leptonychotes weddellii isolate WS11-02
               unplaced genomic scaffold scaffold00286, whole genome
               shotgun sequence
          Length = 1666157

 Score = 32.3 bits (72), Expect = 5.4
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = -3

Query: 18      PGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHA 52
               PG +  + CG+ LF   S +A+S+ W AF++TI+A
Sbjct: 1168068 PGSFYSSHCGFLLFFRLSGHAYST-WNAFSQTIYA 1167967


>gi|472267330|gb|KB717327.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold02621, whole genome
              shotgun sequence
          Length = 375275

 Score = 32.0 bits (71), Expect = 7.0
 Identities = 20/66 (30%), Positives = 26/66 (39%)
 Frame = +3

Query: 22     VCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHE 81
              VC   G E  S R   A  SP        H D+   +    + + L+  C   G G GH 
Sbjct: 276645 VCLVLGREYLSRRHSPALRSP*SRRVGNTHPDTCVHKVCTPKLQGLRGQCLSTGQGPGHP 276824

Query: 82     FLNDGP 87
               L +GP
Sbjct: 276825 ELGEGP 276842


>gi|472266029|gb|KB718628.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold03922, whole genome
              shotgun sequence
          Length = 182919

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +2

Query: 73     KCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPK 106
              +C   LGH F  DGP P   RF I S +LKF P+
Sbjct: 132602 QCEAHLGHVF-PDGPGPSGQRFCINSVALKFKPR 132700


>gi|472267943|gb|KB716714.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold02008, whole genome
              shotgun sequence
          Length = 485126

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 52     ADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQS 92
              A   A+RP   R E ++ SCG  G+GLG        +P +S
Sbjct: 479035 APGFARRPTSTRGENMRPSCGGPGHGLGPRSAPSAHRPARS 478913


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.318    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,983,270
Number of Sequences: 16710
Number of extensions: 9563685
Number of successful extensions: 39523
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 626
Number of HSP's that attempted gapping in prelim test: 34386
Number of HSP's gapped (non-prelim): 12489
length of query: 116
length of database: 1,052,295,386
effective HSP length: 91
effective length of query: 25
effective length of database: 1,050,774,776
effective search space: 26269369400
effective search space used: 26269369400
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)