TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000087_2.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Human (Homo sapiens)
(116 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472269404|gb|KB715285.1| Leptonychotes weddellii isolate WS11... 137 9e-32
gi|472264504|gb|KB720153.1| Leptonychotes weddellii isolate WS11... 105 7e-22
gi|472269653|gb|KB715036.1| Leptonychotes weddellii isolate WS11... 36 0.37
gi|472269796|gb|KB714893.1| Leptonychotes weddellii isolate WS11... 36 0.48
gi|472267780|gb|KB716877.1| Leptonychotes weddellii isolate WS11... 33 3.1
gi|472268663|gb|KB715994.1| Leptonychotes weddellii isolate WS11... 33 3.1
gi|472269629|gb|KB715060.1| Leptonychotes weddellii isolate WS11... 32 5.4
gi|472269697|gb|KB714992.1| Leptonychotes weddellii isolate WS11... 32 5.4
gi|472267330|gb|KB717327.1| Leptonychotes weddellii isolate WS11... 32 7.0
gi|472266029|gb|KB718628.1| Leptonychotes weddellii isolate WS11... 32 9.1
gi|472267943|gb|KB716714.1| Leptonychotes weddellii isolate WS11... 32 9.1
>gi|472269404|gb|KB715285.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00579, whole genome
shotgun sequence
Length = 1188679
Score = 137 bits (346), Expect = 9e-32
Identities = 71/116 (61%), Positives = 78/116 (67%)
Frame = +2
Query: 1 MSFCSFFGGEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPE 60
MSF SFFGGEVF+NHFEP VYVC K YELF S SK H + AFTET+HAD VAK E
Sbjct: 706700 MSFYSFFGGEVFENHFEPLVYVCTKYDYELFFSCSKCEHMA---AFTETMHADRVAKHQE 706870
Query: 61 HNRSEALKVSCGKCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKGKETSASQGH 116
HN EALK CG CG+GLGHEFLNDGPKPGQS ++ K KE + H
Sbjct: 706871 HNTPEALKGPCGMCGHGLGHEFLNDGPKPGQSASEYLATC*SSAGKAKELLPLRSH 707038
>gi|472264504|gb|KB720153.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold05448, whole genome
shotgun sequence
Length = 79701
Score = 105 bits (261), Expect = 7e-22
Identities = 51/62 (82%), Positives = 53/62 (85%)
Frame = +2
Query: 18 PGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNG 77
PGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAK PE N +EALKV G+G
Sbjct: 13937 PGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKCPERNSTEALKVG-SAAGDG 14113
Query: 78 LG 79
G
Sbjct: 14114 EG 14119
Score = 85.1 bits (209), Expect = 7e-16
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = +3
Query: 68 KVSCGKCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKGKET 110
+VSCGKCGNGLGHEFLNDGPKPGQSRF IFSSSLKF+PKG+ T
Sbjct: 14301 QVSCGKCGNGLGHEFLNDGPKPGQSRF*IFSSSLKFIPKGELT 14429
Score = 47.4 bits (111), Expect = 2e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +1
Query: 1 MSFCSFFGGEVFQNHFEPGV 20
MSFCSFFGGEVFQNHFEPG+
Sbjct: 12313 MSFCSFFGGEVFQNHFEPGM 12372
>gi|472269653|gb|KB715036.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00330, whole genome
shotgun sequence
Length = 1601259
Score = 36.2 bits (82), Expect = 0.37
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = -3
Query: 73 KCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKGKETSASQG 115
+CG LGH F +DGP+P R+ I S+SL F P + S +QG
Sbjct: 208126 QCGAHLGHIF-DDGPRPTGKRYCINSASLSFTP--ADGSGAQG 208007
Score = 31.6 bits (70), Expect = 9.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 3 FCSFFGGEVFQNHFEPGVYVCAKCGYELF 31
F S F GE + +H +PG+Y C CG LF
Sbjct: 321276 FISAFEGE-YTHHKDPGIYKCVVCGTPLF 321193
>gi|472269796|gb|KB714893.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00187, whole genome
shotgun sequence
Length = 1903971
Score = 35.8 bits (81), Expect = 0.48
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 32 SSRSKYAHSSP-WPAFTETIHADSVA---KRPEHNRSEALKVSCGKCGNGLGHEFLNDGP 87
SSR + S P WP T + +A +RP +RS A ++C +C G + + P
Sbjct: 1718535 SSRERGPESGPGWPTITSSSSPRELATRRRRPSRSRSRACSITCSRCSKGAWGRWAS-SP 1718711
Query: 88 KPGQSR 93
+P + R
Sbjct: 1718712 RPWEQR 1718729
>gi|472267780|gb|KB716877.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02171, whole genome
shotgun sequence
Length = 444903
Score = 33.1 bits (74), Expect = 3.1
Identities = 23/74 (31%), Positives = 29/74 (39%)
Frame = +2
Query: 40 SSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQSRFXIFSS 99
S P P T T HA++ + SCG+ G + GP PG SR +F
Sbjct: 180368 SQPRPGGTHTSHAEARCEVAGPRFGSPGSRSCGQRGQPHRSDCTGQGPLPGSSRCFLFCE 180547
Query: 100 SLKFVPKGKETSAS 113
SL P AS
Sbjct: 180548 SLLRKPSTAYCPAS 180589
>gi|472268663|gb|KB715994.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01288, whole genome
shotgun sequence
Length = 687634
Score = 33.1 bits (74), Expect = 3.1
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 37 YAHSSPWPAFTETIHADSVAKRPEHNR-SEALKVSCGKCGNGLG 79
Y+H P T++ H+ S + +PE R S+A +V +CG+GLG
Sbjct: 606061 YSHLLPKHGSTDSTHSLSTSSKPELQRHSKAPRVLTHRCGHGLG 606192
>gi|472269629|gb|KB715060.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00354, whole genome
shotgun sequence
Length = 1664468
Score = 32.3 bits (72), Expect = 5.4
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 17 EPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGN 76
EP V +CA G S+ ++ S+P P +R EH++ + KV KCG
Sbjct: 1284903 EPRVGLCAGGGAGGESA*DSFSSSAPHPISLRRRRT----RRKEHDKGKVSKVIQ*KCGE 1285070
Query: 77 GLGH 80
LGH
Sbjct: 1285071 ALGH 1285082
>gi|472269697|gb|KB714992.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00286, whole genome
shotgun sequence
Length = 1666157
Score = 32.3 bits (72), Expect = 5.4
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = -3
Query: 18 PGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHA 52
PG + + CG+ LF S +A+S+ W AF++TI+A
Sbjct: 1168068 PGSFYSSHCGFLLFFRLSGHAYST-WNAFSQTIYA 1167967
>gi|472267330|gb|KB717327.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02621, whole genome
shotgun sequence
Length = 375275
Score = 32.0 bits (71), Expect = 7.0
Identities = 20/66 (30%), Positives = 26/66 (39%)
Frame = +3
Query: 22 VCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHE 81
VC G E S R A SP H D+ + + + L+ C G G GH
Sbjct: 276645 VCLVLGREYLSRRHSPALRSP*SRRVGNTHPDTCVHKVCTPKLQGLRGQCLSTGQGPGHP 276824
Query: 82 FLNDGP 87
L +GP
Sbjct: 276825 ELGEGP 276842
>gi|472266029|gb|KB718628.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold03922, whole genome
shotgun sequence
Length = 182919
Score = 31.6 bits (70), Expect = 9.1
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 73 KCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPK 106
+C LGH F DGP P RF I S +LKF P+
Sbjct: 132602 QCEAHLGHVF-PDGPGPSGQRFCINSVALKFKPR 132700
>gi|472267943|gb|KB716714.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02008, whole genome
shotgun sequence
Length = 485126
Score = 31.6 bits (70), Expect = 9.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 52 ADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQS 92
A A+RP R E ++ SCG G+GLG +P +S
Sbjct: 479035 APGFARRPTSTRGENMRPSCGGPGHGLGPRSAPSAHRPARS 478913
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.318 0.134 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,983,270
Number of Sequences: 16710
Number of extensions: 9563685
Number of successful extensions: 39523
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 626
Number of HSP's that attempted gapping in prelim test: 34386
Number of HSP's gapped (non-prelim): 12489
length of query: 116
length of database: 1,052,295,386
effective HSP length: 91
effective length of query: 25
effective length of database: 1,050,774,776
effective search space: 26269369400
effective search space used: 26269369400
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)