Command line: [exonerate -m p2g --showtargetgff -q ./SelP.fa -t SelP.carpeta/genomic.fa]
Hostname: [ws101087]
C4 Alignment:
------------
Query: SPP00000082_2.0 # Protein # Selenoprotein P (SelP) # Walrus (Odobendus rosmarus)
Target: gi|472267375|gb|KB717282.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02576, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 1695
Query range: 0 -> 386
Target range: 215848 -> 223883
1 : MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProTrpGlyGlyAlaG : 20
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProTrpGlyGlyAlaG
215849 : ATGTGGAGAAGCCTGGGGCTTGCCCTGGCTCTCTGTCTTCTCCCATGGGGAGGAGCAG : 215906
21 : luSerGlnGlyGlnSerSerPheCysLysProProProAlaTrpSerIleGlyAspGl : 39
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||
luSerGlnGluGlnSerSerPheCysLysGlnProProAlaTrpSerIleGlyAspGl
215907 : AGAGCCAGGAACAAAGCTCCTTCTGTAAGCAGCCTCCAGCCTGGAGCATAGGAGATCA : 215963
40 : nAsnProMetValAsnSerSerGlySerValThrValValAlaLeuLeuGlnAlaSer : 58
||||||||||:::|||||||||||||||||||||||||||:::|||||||||||||||
nAsnProMetLeuAsnSerSerGlySerValThrValValSerLeuLeuGlnAlaSer
215964 : AAATCCAATGCTGAACTCAAGTGGTTCGGTAACAGTGGTGTCCCTTCTTCAAGCCAGC : 216020
59 : UnkTyrLeuCysIleLeuGlnAlaSer{Ar} >>>> Target Intron 1 >>>> : 68
||||||||||||||||||||||||{||} 762 bp
***TyrLeuCysIleLeuGlnAlaSer{Ar}++
216021 : TGATACCTGTGCATTCTGCAGGCATCC{AG}gt......................... : 216054
69 : {g}LeuGluAspLeuArgIleLysLeuGluLysGluGlyTyrLeuAsnIleSerTy : 86
{|}|||||||||||||||:::|||||||||||||||||||||||||||||||||||
++{g}LeuGluAspLeuArgValLysLeuGluLysGluGlyTyrLeuAsnIleSerTy
216055 : ag{A}TTGGAAGACCTGCGAGTAAAACTGGAGAAAGAAGGATATTTGAACATCTCTTA : 216866
87 : rValValValAsnHisGlnGlyLeuSerSerGlnLeuLysTyrMetHisLeuLysAsn : 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rValValValAsnHisGlnGlyLeuSerSerGlnLeuLysTyrMetHisLeuLysAsn
216867 : TGTTGTTGTTAATCATCAAGGACTTTCTTCTCAATTAAAATATATGCATCTTAAAAAT : 216923
106 : LysValSerGluTyrIleAlaValTyrGlnGlnGluGluAsnGlnThrAspValTrpT : 125
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
LysValSerGluTyrIleProValTyrGlnGlnGluGluAsnGlnThrAspValTrpM
216924 : AAGGTTTCAGAGTATATTCCTGTTTATCAACAAGAAGAAAACCAAACAGATGTCTGGA : 216983
126 : hrLeuLeuAsnGlyLysLysGluAspPheLeuIleTyrAsp{Ar} >>>> Target : 139
||||||||||||||||||:::||||||||||||||||||{||} 12
etLeuLeuAsnGlyLysLysAspAspPheLeuIleTyrAsp{Ar}++
216984 : TGCTGTTAAATGGGAAAAAGGATGACTTCCTCATATATGAC{AG}gt........... : 217029
140 : Intron 2 >>>> {g}CysGlyArgLeuValTyrHisLeuGlyLeuProTyrSer : 152
84 bp {|}|||||||||||||||||||||||||||||||||||||||
++{g}CysGlyArgLeuValTyrHisLeuGlyLeuProTyrSer
217030 : ..............ag{A}TGTGGCCGTCTTGTATACCATCTTGGTTTGCCTTACTCC : 218348
153 : PheLeuThrPheProTyrValGluGluAlaIleLysIleThrTyrCysLysGluArgC : 172
||||||||||||||||||||||||||||||||||||...|||||||||||||||:::|
PheLeuThrPheProTyrValGluGluAlaIleLysPheThrTyrCysLysGluLysC
218349 : TTTCTAACTTTCCCATATGTAGAAGAAGCCATTAAATTTACTTACTGTAAAGAGAAAT : 218408
173 : ysGlySerCysSerLeuThr >>>> Target Intron 3 >>>> ThrLeuGlu : 181
||||| ||||||||| 4846 bp |||||||||
ysGlyHisCysSerLeuMet++ ++ThrLeuGlu
218409 : GTGGACACTGCTCTCTCATGgt.........................agACCCTGGAA : 223281
182 : AlaGluAspPheCysLysMetValCysLeuAlaThrValGlyAspThrThrGluAlaP : 201
||| ||| |||||||||||| ||||||||||||:::|||||||||||||
AlaAlaAspHisCysLysMetValSerSerAlaThrValGlyAsnThrThrGluAlaP
223282 : GCTGCAGACCACTGTAAAATGGTATCTTCGGCTACTGTGGGAAACACAACTGAGGCTC : 223341
202 : roGlnProHisHisHisHisHisHisHisHisHisHisHisHisArgHisHisHisLy : 220
|||||||| ||||||||||||||||||||| |||||| ||
roGlnPro---------------HisHisHisHisHisHisHisGlyHisHisLeuLy
223342 : CCCAGCCA---------------CATCACCACCACCACCACCATGGTCATCATCTCAA : 223383
221 : sHisGlyHisGlnHisHisGlyIleAspGlyValSerGluAsnGlnGlnProGluAla : 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
sHisGluHisGlnHisHisGlyIleAspGlyValSerGluAsnGlnGlnProGluAla
223384 : GCATGAGCATCAGCATCATGGGATTGATGGGGTTTCAGAGAATCAGCAACCAGAAGCC : 223440
240 : ProAspThrAlaGluHisProThrProUnkGlyLeuHisArgHisHisLysHisLysA : 259
||||||...|||||||||||||||||| |||||||||...||||||||||||||||
ProAspAlaAlaGluHisProThrPro***GlyLeuHisHisHisHisLysHisLysA
223441 : CCAGATGCGGCTGAGCATCCCACTCCTTGAGGCCTCCATCACCACCATAAGCACAAGA : 223500
260 : snHisGlnArgGluGlyHisProAspThrUnkAspLeuProAlaGlySerGluSerSe : 278
|||||||||||:::|||||||||:::||| ||||||||||||||||||||||||
snHisGlnArgGlnGlyHisProGluThr***AspLeuProAlaGlySerGluSerLe
223501 : ACCACCAAAGACAGGGCCACCCAGAGACCTGAGATCTGCCAGCAGGAAGTGAAAGTTT : 223557
279 : rGlnProSerValProGlnLysArgLeuUnkArgLysGlyCysIleAsnGlnLeuLeu : 297
||| ||||||||||||:::|||||| ||||||||||||||||||||||||
uGlnLeuSerValProGlnArgArgLeu******LysGlyCysIleAsnGlnLeuLeu
223558 : ACAACTTTCTGTTCCACAGAGGAGGCTCTGATGAAAGGGATGTATAAATCAATTACTC : 223614
298 : CysLysLeuProLysAspSerGlyLeuAlaProAsnSerCysCysUnkHisUnkArgH : 317
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
CysLysLeuProLysAspSerGlyLeuAlaProAsnSerCysCys***His***ArgH
223615 : TGCAAATTGCCTAAAGATTCAGGGTTGGCCCCTAACAGCTGTTGCTGACACTGACGAC : 223674
318 : isLeuIlePheGluLysThrGlySerAlaIleThrUnkGlnCysLysGluSerLeuPr : 336
||||||||||||||||||||||||||||||||||| ||||||||||||:::|||||
isLeuIlePheGluLysThrGlySerAlaIleThr***GlnCysLysGluThrLeuPr
223675 : ATCTGATATTTGAAAAAACAGGGTCTGCAATCACCTGACAATGTAAAGAAACCCTCCC : 223731
337 : oSerLeuCysSerUnkGlnGlyLeuTrpAlaGluGluAsnValIleGluSerUnkGln : 355
||||||||||||| |||||||||||||||||||||||||||||||||||| |||
oSerLeuCysSer***GlnGlyLeuTrpAlaGluGluAsnValIleGluSer***Gln
223732 : CTCTTTATGCAGCTGACAGGGACTTTGGGCAGAGGAGAACGTCATTGAATCTTGACAG : 223788
356 : UnkArgLeuProProAlaAlaUnkGlnAlaSerGlnGlnLeuGlnProThrGluAlaS : 375
|||||||||||||||||| ||||||||||||||||||||||||||||||||||
***ArgLeuProProAlaAla***GlnAlaSerGlnGlnLeuGlnProThrGluAlaS
223789 : TGACGTTTGCCTCCGGCTGCCTGACAAGCAAGTCAGCAGCTTCAGCCCACAGAAGCCA : 223848
376 : erThrAsnUnkSerUnkLysHisLysAlaLysMet : 386
||...::: ||| ||||||||||||||||||
erAlaSer***Ser***LysHisLysAlaLysMet
223849 : GCGCCAGTTGAAGCTGAAAACATAAGGCCAAAATG : 223883
vulgar: SPP00000082_2.0 0 386 . gi|472267375|gb|KB717282.1| 215848 223883 + 1695 M 67 201 S 0 2 5 0 2 I 0 758 3 0 2 S 1 1 M 70 210 S 0 2 5 0 2 I 0 1280 3 0 2 S 1 1 M 39 117 5 0 2 I 0 4842 3 0 2 M 25 75 G 5 0 M 178 534
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local gene 215849 223883 1695 + . gene_id 1 ; sequence SPP00000082_2.0 ; gene_orientation +
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local cds 215849 216051 . + .
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local exon 215849 216051 . + . insertions 0 ; deletions 0
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local splice5 216052 216053 . + . intron_id 1 ; splice_site "GT"
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local intron 216052 216813 . + . intron_id 1
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local splice3 216812 216813 . + . intron_id 0 ; splice_site "AG"
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local cds 216814 217026 . + .
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local exon 216814 217026 . + . insertions 0 ; deletions 0
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local splice5 217027 217028 . + . intron_id 2 ; splice_site "GT"
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local intron 217027 218310 . + . intron_id 2
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local splice3 218309 218310 . + . intron_id 1 ; splice_site "AG"
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local cds 218311 218428 . + .
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local exon 218311 218428 . + . insertions 0 ; deletions 0
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local splice5 218429 218430 . + . intron_id 3 ; splice_site "GT"
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local intron 218429 223274 . + . intron_id 3
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local splice3 223273 223274 . + . intron_id 2 ; splice_site "AG"
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local cds 223275 223883 . + .
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local exon 223275 223883 . + . insertions 0 ; deletions 5
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local similarity 215849 223883 1695 + . alignment_id 1 ; Query SPP00000082_2.0 ; Align 215849 1 201 ; Align 216815 69 210 ; Align 218312 140 117 ; Align 223275 179 75 ; Align 223350 209 534
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis