Command line: [exonerate -m p2g --showtargetgff -q ./SelP.fa -t SelP.carpeta/genomic.fa]
Hostname: [ws101087]

C4 Alignment:
------------
         Query: SPP00000082_2.0 # Protein # Selenoprotein P (SelP) # Walrus (Odobendus rosmarus)
        Target: gi|472267375|gb|KB717282.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02576, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1695
   Query range: 0 -> 386
  Target range: 215848 -> 223883

      1 : MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProTrpGlyGlyAlaG :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProTrpGlyGlyAlaG
 215849 : ATGTGGAGAAGCCTGGGGCTTGCCCTGGCTCTCTGTCTTCTCCCATGGGGAGGAGCAG : 215906

     21 : luSerGlnGlyGlnSerSerPheCysLysProProProAlaTrpSerIleGlyAspGl :     39
          ||||||||   ||||||||||||||||||   ||||||||||||||||||||||||||
          luSerGlnGluGlnSerSerPheCysLysGlnProProAlaTrpSerIleGlyAspGl
 215907 : AGAGCCAGGAACAAAGCTCCTTCTGTAAGCAGCCTCCAGCCTGGAGCATAGGAGATCA : 215963

     40 : nAsnProMetValAsnSerSerGlySerValThrValValAlaLeuLeuGlnAlaSer :     58
          ||||||||||:::|||||||||||||||||||||||||||:::|||||||||||||||
          nAsnProMetLeuAsnSerSerGlySerValThrValValSerLeuLeuGlnAlaSer
 215964 : AAATCCAATGCTGAACTCAAGTGGTTCGGTAACAGTGGTGTCCCTTCTTCAAGCCAGC : 216020

     59 : UnkTyrLeuCysIleLeuGlnAlaSer{Ar}  >>>> Target Intron 1 >>>> :     68
             ||||||||||||||||||||||||{||}            762 bp         
          ***TyrLeuCysIleLeuGlnAlaSer{Ar}++                         
 216021 : TGATACCTGTGCATTCTGCAGGCATCC{AG}gt......................... : 216054

     69 :   {g}LeuGluAspLeuArgIleLysLeuGluLysGluGlyTyrLeuAsnIleSerTy :     86
            {|}|||||||||||||||:::|||||||||||||||||||||||||||||||||||
          ++{g}LeuGluAspLeuArgValLysLeuGluLysGluGlyTyrLeuAsnIleSerTy
 216055 : ag{A}TTGGAAGACCTGCGAGTAAAACTGGAGAAAGAAGGATATTTGAACATCTCTTA : 216866

     87 : rValValValAsnHisGlnGlyLeuSerSerGlnLeuLysTyrMetHisLeuLysAsn :    105
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rValValValAsnHisGlnGlyLeuSerSerGlnLeuLysTyrMetHisLeuLysAsn
 216867 : TGTTGTTGTTAATCATCAAGGACTTTCTTCTCAATTAAAATATATGCATCTTAAAAAT : 216923

    106 : LysValSerGluTyrIleAlaValTyrGlnGlnGluGluAsnGlnThrAspValTrpT :    125
          ||||||||||||||||||   |||||||||||||||||||||||||||||||||||| 
          LysValSerGluTyrIleProValTyrGlnGlnGluGluAsnGlnThrAspValTrpM
 216924 : AAGGTTTCAGAGTATATTCCTGTTTATCAACAAGAAGAAAACCAAACAGATGTCTGGA : 216983

    126 : hrLeuLeuAsnGlyLysLysGluAspPheLeuIleTyrAsp{Ar}  >>>> Target :    139
            ||||||||||||||||||:::||||||||||||||||||{||}           12
          etLeuLeuAsnGlyLysLysAspAspPheLeuIleTyrAsp{Ar}++           
 216984 : TGCTGTTAAATGGGAAAAAGGATGACTTCCTCATATATGAC{AG}gt........... : 217029

    140 :  Intron 2 >>>>  {g}CysGlyArgLeuValTyrHisLeuGlyLeuProTyrSer :    152
          84 bp           {|}|||||||||||||||||||||||||||||||||||||||
                        ++{g}CysGlyArgLeuValTyrHisLeuGlyLeuProTyrSer
 217030 : ..............ag{A}TGTGGCCGTCTTGTATACCATCTTGGTTTGCCTTACTCC : 218348

    153 : PheLeuThrPheProTyrValGluGluAlaIleLysIleThrTyrCysLysGluArgC :    172
          ||||||||||||||||||||||||||||||||||||...|||||||||||||||:::|
          PheLeuThrPheProTyrValGluGluAlaIleLysPheThrTyrCysLysGluLysC
 218349 : TTTCTAACTTTCCCATATGTAGAAGAAGCCATTAAATTTACTTACTGTAAAGAGAAAT : 218408

    173 : ysGlySerCysSerLeuThr  >>>> Target Intron 3 >>>>  ThrLeuGlu :    181
          |||||   |||||||||              4846 bp           |||||||||
          ysGlyHisCysSerLeuMet++                         ++ThrLeuGlu
 218409 : GTGGACACTGCTCTCTCATGgt.........................agACCCTGGAA : 223281

    182 : AlaGluAspPheCysLysMetValCysLeuAlaThrValGlyAspThrThrGluAlaP :    201
          |||   |||   ||||||||||||      ||||||||||||:::|||||||||||||
          AlaAlaAspHisCysLysMetValSerSerAlaThrValGlyAsnThrThrGluAlaP
 223282 : GCTGCAGACCACTGTAAAATGGTATCTTCGGCTACTGTGGGAAACACAACTGAGGCTC : 223341

    202 : roGlnProHisHisHisHisHisHisHisHisHisHisHisHisArgHisHisHisLy :    220
          ||||||||               |||||||||||||||||||||   ||||||   ||
          roGlnPro---------------HisHisHisHisHisHisHisGlyHisHisLeuLy
 223342 : CCCAGCCA---------------CATCACCACCACCACCACCATGGTCATCATCTCAA : 223383

    221 : sHisGlyHisGlnHisHisGlyIleAspGlyValSerGluAsnGlnGlnProGluAla :    239
          ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
          sHisGluHisGlnHisHisGlyIleAspGlyValSerGluAsnGlnGlnProGluAla
 223384 : GCATGAGCATCAGCATCATGGGATTGATGGGGTTTCAGAGAATCAGCAACCAGAAGCC : 223440

    240 : ProAspThrAlaGluHisProThrProUnkGlyLeuHisArgHisHisLysHisLysA :    259
          ||||||...||||||||||||||||||   |||||||||...||||||||||||||||
          ProAspAlaAlaGluHisProThrPro***GlyLeuHisHisHisHisLysHisLysA
 223441 : CCAGATGCGGCTGAGCATCCCACTCCTTGAGGCCTCCATCACCACCATAAGCACAAGA : 223500

    260 : snHisGlnArgGluGlyHisProAspThrUnkAspLeuProAlaGlySerGluSerSe :    278
          |||||||||||:::|||||||||:::|||   ||||||||||||||||||||||||  
          snHisGlnArgGlnGlyHisProGluThr***AspLeuProAlaGlySerGluSerLe
 223501 : ACCACCAAAGACAGGGCCACCCAGAGACCTGAGATCTGCCAGCAGGAAGTGAAAGTTT : 223557

    279 : rGlnProSerValProGlnLysArgLeuUnkArgLysGlyCysIleAsnGlnLeuLeu :    297
           |||   ||||||||||||:::||||||      ||||||||||||||||||||||||
          uGlnLeuSerValProGlnArgArgLeu******LysGlyCysIleAsnGlnLeuLeu
 223558 : ACAACTTTCTGTTCCACAGAGGAGGCTCTGATGAAAGGGATGTATAAATCAATTACTC : 223614

    298 : CysLysLeuProLysAspSerGlyLeuAlaProAsnSerCysCysUnkHisUnkArgH :    317
          |||||||||||||||||||||||||||||||||||||||||||||   |||   ||||
          CysLysLeuProLysAspSerGlyLeuAlaProAsnSerCysCys***His***ArgH
 223615 : TGCAAATTGCCTAAAGATTCAGGGTTGGCCCCTAACAGCTGTTGCTGACACTGACGAC : 223674

    318 : isLeuIlePheGluLysThrGlySerAlaIleThrUnkGlnCysLysGluSerLeuPr :    336
          |||||||||||||||||||||||||||||||||||   ||||||||||||:::|||||
          isLeuIlePheGluLysThrGlySerAlaIleThr***GlnCysLysGluThrLeuPr
 223675 : ATCTGATATTTGAAAAAACAGGGTCTGCAATCACCTGACAATGTAAAGAAACCCTCCC : 223731

    337 : oSerLeuCysSerUnkGlnGlyLeuTrpAlaGluGluAsnValIleGluSerUnkGln :    355
          |||||||||||||   ||||||||||||||||||||||||||||||||||||   |||
          oSerLeuCysSer***GlnGlyLeuTrpAlaGluGluAsnValIleGluSer***Gln
 223732 : CTCTTTATGCAGCTGACAGGGACTTTGGGCAGAGGAGAACGTCATTGAATCTTGACAG : 223788

    356 : UnkArgLeuProProAlaAlaUnkGlnAlaSerGlnGlnLeuGlnProThrGluAlaS :    375
             ||||||||||||||||||   ||||||||||||||||||||||||||||||||||
          ***ArgLeuProProAlaAla***GlnAlaSerGlnGlnLeuGlnProThrGluAlaS
 223789 : TGACGTTTGCCTCCGGCTGCCTGACAAGCAAGTCAGCAGCTTCAGCCCACAGAAGCCA : 223848

    376 : erThrAsnUnkSerUnkLysHisLysAlaLysMet :    386
          ||...:::   |||   ||||||||||||||||||
          erAlaSer***Ser***LysHisLysAlaLysMet
 223849 : GCGCCAGTTGAAGCTGAAAACATAAGGCCAAAATG : 223883

vulgar: SPP00000082_2.0 0 386 . gi|472267375|gb|KB717282.1| 215848 223883 + 1695 M 67 201 S 0 2 5 0 2 I 0 758 3 0 2 S 1 1 M 70 210 S 0 2 5 0 2 I 0 1280 3 0 2 S 1 1 M 39 117 5 0 2 I 0 4842 3 0 2 M 25 75 G 5 0 M 178 534
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	gene	215849	223883	1695	+	.	gene_id 1 ; sequence SPP00000082_2.0 ; gene_orientation +
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	cds	215849	216051	.	+	.	
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	exon	215849	216051	.	+	.	insertions 0 ; deletions 0
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	splice5	216052	216053	.	+	.	intron_id 1 ; splice_site "GT"
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	intron	216052	216813	.	+	.	intron_id 1
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	splice3	216812	216813	.	+	.	intron_id 0 ; splice_site "AG"
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	cds	216814	217026	.	+	.	
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	exon	216814	217026	.	+	.	insertions 0 ; deletions 0
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	splice5	217027	217028	.	+	.	intron_id 2 ; splice_site "GT"
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	intron	217027	218310	.	+	.	intron_id 2
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	splice3	218309	218310	.	+	.	intron_id 1 ; splice_site "AG"
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	cds	218311	218428	.	+	.	
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	exon	218311	218428	.	+	.	insertions 0 ; deletions 0
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	splice5	218429	218430	.	+	.	intron_id 3 ; splice_site "GT"
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	intron	218429	223274	.	+	.	intron_id 3
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	splice3	223273	223274	.	+	.	intron_id 2 ; splice_site "AG"
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	cds	223275	223883	.	+	.	
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	exon	223275	223883	.	+	.	insertions 0 ; deletions 5
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	similarity	215849	223883	1695	+	.	alignment_id 1 ; Query SPP00000082_2.0 ; Align 215849 1 201 ; Align 216815 69 210 ; Align 218312 140 117 ; Align 223275 179 75 ; Align 223350 209 534
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis