TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000082_2.0 # Protein # Selenoprotein P (SelP) # Walrus (Odobendus rosmarus) (386 letters) Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno me.fa 16,710 sequences; 3,156,886,159 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|472267375|gb|KB717282.1| Leptonychotes weddellii isolate WS11... 263 1e-68 gi|472267298|gb|KB717359.1| Leptonychotes weddellii isolate WS11... 39 0.44 gi|472268937|gb|KB715720.1| Leptonychotes weddellii isolate WS11... 39 0.58 gi|472269432|gb|KB715257.1| Leptonychotes weddellii isolate WS11... 37 2.2 gi|472267210|gb|KB717447.1| Leptonychotes weddellii isolate WS11... 35 8.3 gi|472269732|gb|KB714957.1| Leptonychotes weddellii isolate WS11... 35 8.3 >gi|472267375|gb|KB717282.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02576, whole genome shotgun sequence Length = 370331 Score = 263 bits (672), Expect = 1e-68 Identities = 142/208 (68%), Positives = 148/208 (71%) Frame = +3 Query: 179 TLEAEDFCKMVCLATVGDTTEAPQPXXXXXXXXXXXXXXXXXXXXXXXGIDGVSENQQPE 238 TLEA D CKMV ATVG+TTEAPQP GIDGVSENQQPE Sbjct: 223275 TLEAADHCKMVSSATVGNTTEAPQPHHHHHHHGHHLKHEHQHH-----GIDGVSENQQPE 223439 Query: 239 APDTAEHPTPXGLHRHHKHKNHQREGHPDTXDLPAGSESSQPSVPQKRLXRKGCINQLLC 298 APD AEHPTP GLH HHKHKNHQR+GHP+T DLPAGSES Q SVPQ+RL KGCINQLLC Sbjct: 223440 APDAAEHPTP*GLHHHHKHKNHQRQGHPET*DLPAGSESLQLSVPQRRL**KGCINQLLC 223619 Query: 299 KLPKDSGLAPNSCCXHXRHLIFEKTGSAITXQCKESLPSLCSXQGLWAEENVIESXXXXX 358 KLPKDSGLAPNSCC H RHLIFEKTGSAIT QCKE+LPSLCS QGLWAEENVIES Sbjct: 223620 KLPKDSGLAPNSCC*H*RHLIFEKTGSAIT*QCKETLPSLCS*QGLWAEENVIES*Q*RL 223799 Query: 359 XXXXXXXXXXXXXTEASTNXSXKHKAKM 386 TEAS + S KHKAKM Sbjct: 223800 PPAA*QASQQLQPTEASAS*S*KHKAKM 223883 Score = 145 bits (366), Expect = 4e-33 Identities = 69/73 (94%), Positives = 71/73 (97%) Frame = +2 Query: 68 RLEDLRIKLEKEGYLNISYVVVNHQGLSSQLKYMHLKNKVSEYIAVYQQEENQTDVWTLL 127 RLEDLR+KLEKEGYLNISYVVVNHQGLSSQLKYMHLKNKVSEYI VYQQEENQTDVW LL Sbjct: 216812 RLEDLRVKLEKEGYLNISYVVVNHQGLSSQLKYMHLKNKVSEYIPVYQQEENQTDVWMLL 216991 Query: 128 NGKKEDFLIYDRC 140 NGKK+DFLIYDRC Sbjct: 216992 NGKKDDFLIYDRC 217030 Score = 94.4 bits (233), Expect = 1e-17 Identities = 49/70 (70%), Positives = 51/70 (72%) Frame = +2 Query: 1 MWRSXXXXXXXXXXXXXXXESQGQSSFCKPPPAWSIGDQNPMVNSSGSVTVVALLQASXY 60 MWRS ESQ QSSFCK PPAWSIGDQNPM+NSSGSVTVV+LLQAS Y Sbjct: 215849 MWRSLGLALALCLLPWGGAESQEQSSFCKQPPAWSIGDQNPMLNSSGSVTVVSLLQAS*Y 216028 Query: 61 LCILQASRLE 70 LCILQASR E Sbjct: 216029 LCILQASR*E 216058 Score = 84.0 bits (206), Expect = 2e-14 Identities = 36/39 (92%), Positives = 37/39 (94%) Frame = +2 Query: 139 RCGRLVYHLGLPYSFLTFPYVEEAIKITYCKERCGSCSL 177 RCGRLVYHLGLPYSFLTFPYVEEAIK TYCKE+CG CSL Sbjct: 218309 RCGRLVYHLGLPYSFLTFPYVEEAIKFTYCKEKCGHCSL 218425 >gi|472267298|gb|KB717359.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02653, whole genome shotgun sequence Length = 332361 Score = 39.3 bits (90), Expect = 0.44 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Frame = +1 Query: 230 GVSENQQPEAPDTAEHPTPXGLHRHHKHKNHQREGH--PDTXDLPAGSESSQPSVPQKRL 287 G +++ AP+TA P HR +H HQ +G P +P G P+ P +RL Sbjct: 148843 GAADSPWLRAPETARAPRSESTHRLRRHAGHQDQGEQDPSAPHIPRG-----PAAPSRRL 149007 Query: 288 XRKGCINQLLCKLPKDSG 305 R N+ C P +G Sbjct: 149008 QRGR--NEAYCLAPGAAG 149055 >gi|472268937|gb|KB715720.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01014, whole genome shotgun sequence Length = 779095 Score = 38.9 bits (89), Expect = 0.58 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Frame = -2 Query: 227 GIDGVSENQQPEAPDTAEHPTPXGLHRHHKHKNH-QREGHPDTXDLPAGSESSQPS--VP 283 G G + P P A P GL R + H + H T G E P+ VP Sbjct: 638169 GHRGAARGAGPWDPPPA--PRQLGLERQSRDPGHCVQHQHTPTWAPGQGPEDRLPTTPVP 637996 Query: 284 QKRLXRKGCINQLLCKLPKDSGLAPNSCC 312 Q RL +G I+Q L SGL PN+CC Sbjct: 637995 QLRLDTRGAISQAL------SGLGPNTCC 637927 >gi|472269432|gb|KB715257.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00551, whole genome shotgun sequence Length = 1193181 Score = 37.0 bits (84), Expect = 2.2 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = -1 Query: 272 PAGSESSQPSVPQKRLXRKGCINQLLCKLPKDSGLAPNS 310 P S SSQPS Q R+ R C+NQ +C + D A S Sbjct: 1134912 PTSSFSSQPSAKQSRITRSSCLNQ*VCSVTSDKAEAVGS 1134796 >gi|472267210|gb|KB717447.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02741, whole genome shotgun sequence Length = 350799 Score = 35.0 bits (79), Expect = 8.3 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Frame = +1 Query: 113 VYQQEENQTDVWTLLNGKKEDFLIYDRCGRLVYHLGLPYSFLTFPYVEEAIK----ITYC 168 + Q+ + + TL + DF I D C + H GL SFL PYV E+ + +T+ Sbjct: 187933 IRQRPRDTRSINTLPGDRIVDFCITDLCPVALMHRGLVGSFLLGPYVWESTQTLQ*LTWT 188112 Query: 169 KERCGS 174 K RC S Sbjct: 188113 KFRCQS 188130 >gi|472269732|gb|KB714957.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00251, whole genome shotgun sequence Length = 2126827 Score = 35.0 bits (79), Expect = 8.3 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Frame = -2 Query: 89 VNHQGLSSQLKYMHLKNK-VSEYIAVYQQEENQTDVWTLLNGKKEDFLIYDRCGRLVYHL 147 VNH+G Q +Y+H ++ +S Y + Q+ENQ +W L+G++ RC R+ HL Sbjct: 1492440 VNHRGKCRQGRYVHSNSRMISFYSVL*VQKENQVRIWGGLHGER------GRC-RIRSHL 1492282 Query: 148 G 148 G Sbjct: 1492281 G 1492279 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 3,087,506,849 Number of sequences in database: 5788 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa.01 Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 69,379,310 Number of sequences in database: 10,922 Lambda K H 0.315 0.131 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,452,682,298 Number of Sequences: 16710 Number of extensions: 22506724 Number of successful extensions: 122001 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 787 Number of HSP's successfully gapped in prelim test: 603 Number of HSP's that attempted gapping in prelim test: 107019 Number of HSP's gapped (non-prelim): 33896 length of query: 386 length of database: 1,052,295,386 effective HSP length: 134 effective length of query: 252 effective length of database: 1,050,056,246 effective search space: 264614173992 effective search space used: 264614173992 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 78 (34.7 bits)