TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000082_2.0 # Protein # Selenoprotein P (SelP) # Walrus
(Odobendus rosmarus)
(386 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472267375|gb|KB717282.1| Leptonychotes weddellii isolate WS11... 263 1e-68
gi|472267298|gb|KB717359.1| Leptonychotes weddellii isolate WS11... 39 0.44
gi|472268937|gb|KB715720.1| Leptonychotes weddellii isolate WS11... 39 0.58
gi|472269432|gb|KB715257.1| Leptonychotes weddellii isolate WS11... 37 2.2
gi|472267210|gb|KB717447.1| Leptonychotes weddellii isolate WS11... 35 8.3
gi|472269732|gb|KB714957.1| Leptonychotes weddellii isolate WS11... 35 8.3
>gi|472267375|gb|KB717282.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02576, whole genome
shotgun sequence
Length = 370331
Score = 263 bits (672), Expect = 1e-68
Identities = 142/208 (68%), Positives = 148/208 (71%)
Frame = +3
Query: 179 TLEAEDFCKMVCLATVGDTTEAPQPXXXXXXXXXXXXXXXXXXXXXXXGIDGVSENQQPE 238
TLEA D CKMV ATVG+TTEAPQP GIDGVSENQQPE
Sbjct: 223275 TLEAADHCKMVSSATVGNTTEAPQPHHHHHHHGHHLKHEHQHH-----GIDGVSENQQPE 223439
Query: 239 APDTAEHPTPXGLHRHHKHKNHQREGHPDTXDLPAGSESSQPSVPQKRLXRKGCINQLLC 298
APD AEHPTP GLH HHKHKNHQR+GHP+T DLPAGSES Q SVPQ+RL KGCINQLLC
Sbjct: 223440 APDAAEHPTP*GLHHHHKHKNHQRQGHPET*DLPAGSESLQLSVPQRRL**KGCINQLLC 223619
Query: 299 KLPKDSGLAPNSCCXHXRHLIFEKTGSAITXQCKESLPSLCSXQGLWAEENVIESXXXXX 358
KLPKDSGLAPNSCC H RHLIFEKTGSAIT QCKE+LPSLCS QGLWAEENVIES
Sbjct: 223620 KLPKDSGLAPNSCC*H*RHLIFEKTGSAIT*QCKETLPSLCS*QGLWAEENVIES*Q*RL 223799
Query: 359 XXXXXXXXXXXXXTEASTNXSXKHKAKM 386
TEAS + S KHKAKM
Sbjct: 223800 PPAA*QASQQLQPTEASAS*S*KHKAKM 223883
Score = 145 bits (366), Expect = 4e-33
Identities = 69/73 (94%), Positives = 71/73 (97%)
Frame = +2
Query: 68 RLEDLRIKLEKEGYLNISYVVVNHQGLSSQLKYMHLKNKVSEYIAVYQQEENQTDVWTLL 127
RLEDLR+KLEKEGYLNISYVVVNHQGLSSQLKYMHLKNKVSEYI VYQQEENQTDVW LL
Sbjct: 216812 RLEDLRVKLEKEGYLNISYVVVNHQGLSSQLKYMHLKNKVSEYIPVYQQEENQTDVWMLL 216991
Query: 128 NGKKEDFLIYDRC 140
NGKK+DFLIYDRC
Sbjct: 216992 NGKKDDFLIYDRC 217030
Score = 94.4 bits (233), Expect = 1e-17
Identities = 49/70 (70%), Positives = 51/70 (72%)
Frame = +2
Query: 1 MWRSXXXXXXXXXXXXXXXESQGQSSFCKPPPAWSIGDQNPMVNSSGSVTVVALLQASXY 60
MWRS ESQ QSSFCK PPAWSIGDQNPM+NSSGSVTVV+LLQAS Y
Sbjct: 215849 MWRSLGLALALCLLPWGGAESQEQSSFCKQPPAWSIGDQNPMLNSSGSVTVVSLLQAS*Y 216028
Query: 61 LCILQASRLE 70
LCILQASR E
Sbjct: 216029 LCILQASR*E 216058
Score = 84.0 bits (206), Expect = 2e-14
Identities = 36/39 (92%), Positives = 37/39 (94%)
Frame = +2
Query: 139 RCGRLVYHLGLPYSFLTFPYVEEAIKITYCKERCGSCSL 177
RCGRLVYHLGLPYSFLTFPYVEEAIK TYCKE+CG CSL
Sbjct: 218309 RCGRLVYHLGLPYSFLTFPYVEEAIKFTYCKEKCGHCSL 218425
>gi|472267298|gb|KB717359.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02653, whole genome
shotgun sequence
Length = 332361
Score = 39.3 bits (90), Expect = 0.44
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +1
Query: 230 GVSENQQPEAPDTAEHPTPXGLHRHHKHKNHQREGH--PDTXDLPAGSESSQPSVPQKRL 287
G +++ AP+TA P HR +H HQ +G P +P G P+ P +RL
Sbjct: 148843 GAADSPWLRAPETARAPRSESTHRLRRHAGHQDQGEQDPSAPHIPRG-----PAAPSRRL 149007
Query: 288 XRKGCINQLLCKLPKDSG 305
R N+ C P +G
Sbjct: 149008 QRGR--NEAYCLAPGAAG 149055
>gi|472268937|gb|KB715720.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01014, whole genome
shotgun sequence
Length = 779095
Score = 38.9 bits (89), Expect = 0.58
Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Frame = -2
Query: 227 GIDGVSENQQPEAPDTAEHPTPXGLHRHHKHKNH-QREGHPDTXDLPAGSESSQPS--VP 283
G G + P P A P GL R + H + H T G E P+ VP
Sbjct: 638169 GHRGAARGAGPWDPPPA--PRQLGLERQSRDPGHCVQHQHTPTWAPGQGPEDRLPTTPVP 637996
Query: 284 QKRLXRKGCINQLLCKLPKDSGLAPNSCC 312
Q RL +G I+Q L SGL PN+CC
Sbjct: 637995 QLRLDTRGAISQAL------SGLGPNTCC 637927
>gi|472269432|gb|KB715257.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00551, whole genome
shotgun sequence
Length = 1193181
Score = 37.0 bits (84), Expect = 2.2
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 272 PAGSESSQPSVPQKRLXRKGCINQLLCKLPKDSGLAPNS 310
P S SSQPS Q R+ R C+NQ +C + D A S
Sbjct: 1134912 PTSSFSSQPSAKQSRITRSSCLNQ*VCSVTSDKAEAVGS 1134796
>gi|472267210|gb|KB717447.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02741, whole genome
shotgun sequence
Length = 350799
Score = 35.0 bits (79), Expect = 8.3
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 113 VYQQEENQTDVWTLLNGKKEDFLIYDRCGRLVYHLGLPYSFLTFPYVEEAIK----ITYC 168
+ Q+ + + TL + DF I D C + H GL SFL PYV E+ + +T+
Sbjct: 187933 IRQRPRDTRSINTLPGDRIVDFCITDLCPVALMHRGLVGSFLLGPYVWESTQTLQ*LTWT 188112
Query: 169 KERCGS 174
K RC S
Sbjct: 188113 KFRCQS 188130
>gi|472269732|gb|KB714957.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00251, whole genome
shotgun sequence
Length = 2126827
Score = 35.0 bits (79), Expect = 8.3
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -2
Query: 89 VNHQGLSSQLKYMHLKNK-VSEYIAVYQQEENQTDVWTLLNGKKEDFLIYDRCGRLVYHL 147
VNH+G Q +Y+H ++ +S Y + Q+ENQ +W L+G++ RC R+ HL
Sbjct: 1492440 VNHRGKCRQGRYVHSNSRMISFYSVL*VQKENQVRIWGGLHGER------GRC-RIRSHL 1492282
Query: 148 G 148
G
Sbjct: 1492281 G 1492279
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.315 0.131 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,452,682,298
Number of Sequences: 16710
Number of extensions: 22506724
Number of successful extensions: 122001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 603
Number of HSP's that attempted gapping in prelim test: 107019
Number of HSP's gapped (non-prelim): 33896
length of query: 386
length of database: 1,052,295,386
effective HSP length: 134
effective length of query: 252
effective length of database: 1,050,056,246
effective search space: 264614173992
effective search space used: 264614173992
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)