TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000070_2.0 # Protein # Selenoprotein H (SelH) # Walrus (Odobenus rosmarus) (122 letters) Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno me.fa 16,710 sequences; 3,156,886,159 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|472269976|gb|KB714713.1| Leptonychotes weddellii isolate WS11... 184 1e-45 gi|472269882|gb|KB714807.1| Leptonychotes weddellii isolate WS11... 140 1e-34 gi|472267969|gb|KB716688.1| Leptonychotes weddellii isolate WS11... 36 0.37 gi|472268859|gb|KB715798.1| Leptonychotes weddellii isolate WS11... 34 1.4 gi|472267802|gb|KB716855.1| Leptonychotes weddellii isolate WS11... 32 5.4 gi|472267837|gb|KB716820.1| Leptonychotes weddellii isolate WS11... 32 9.1 >gi|472269976|gb|KB714713.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00007, whole genome shotgun sequence Length = 6702950 Score = 184 bits (466), Expect = 1e-45 Identities = 92/95 (96%), Positives = 93/95 (97%) Frame = -3 Query: 28 RKAVEAATVVIEHCTSXRVYGRNAAALSQALRLETPELPVEVNPAKPRRGSFEVTLLRPD 87 RKAVEAATVVIEHCTS RVYGRNAAALSQALRLETPELPVEVNPAKPRRGS EVTLLRPD Sbjct: 3686562 RKAVEAATVVIEHCTS*RVYGRNAAALSQALRLETPELPVEVNPAKPRRGSLEVTLLRPD 3686383 Query: 88 GSSVELWTGIKKGPPRKLKFPEPQEVVKELKKHLS 122 GSSVELWTGI+KGPPRKLKFPEPQEVVKELKKHLS Sbjct: 3686382 GSSVELWTGIQKGPPRKLKFPEPQEVVKELKKHLS 3686278 >gi|472269882|gb|KB714807.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00101, whole genome shotgun sequence Length = 2603626 Score = 140 bits (353), Expect(2) = 1e-34 Identities = 79/120 (65%), Positives = 80/120 (66%), Gaps = 39/120 (32%) Frame = -1 Query: 42 TSXRVYGRNAAALSQALRLETPELPVEVNPAKPRRGSFEVTLLRPDGSS----------- 90 TS RVYGRNAAALSQALRLETP+LPVEVNPAKPRRGSFEVTLLRPDGSS Sbjct: 750682 TS*RVYGRNAAALSQALRLETPDLPVEVNPAKPRRGSFEVTLLRPDGSSEWRPGSRREAL 750503 Query: 91 ----------------------------VELWTGIKKGPPRKLKFPEPQEVVKELKKHLS 122 VELWTGIKKGPPRKLKFPEPQEVVKELKKHLS Sbjct: 750502 GSARGHLGIWGTCWCIPK*LRFLGLFPGVELWTGIKKGPPRKLKFPEPQEVVKELKKHLS 750323 Score = 28.1 bits (61), Expect(2) = 1e-34 Identities = 13/13 (100%), Positives = 13/13 (100%) Frame = -2 Query: 28 RKAVEAATVVIEH 40 RKAVEAATVVIEH Sbjct: 750810 RKAVEAATVVIEH 750772 >gi|472267969|gb|KB716688.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01982, whole genome shotgun sequence Length = 484971 Score = 36.2 bits (82), Expect = 0.37 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Frame = -3 Query: 45 RVYGRNAAALSQALRLETPELPVEVN-PAKPRRGSFEVT--LLRPDGSSVELWTGIKKGP 101 R A +L+ A P +P EV +P GS LRP+G V +W G GP Sbjct: 161428 RTSSLRAGSLAWAAPPARPPVPREVTGKTEPPHGSGNEAGGSLRPEG*EVMVWLGGAVGP 161249 Query: 102 PRKLKFPEPQEVVKEL 117 KL+ P+P+ V+ L Sbjct: 161248 LTKLRRPQPEGAVQSL 161201 >gi|472268859|gb|KB715798.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01092, whole genome shotgun sequence Length = 785425 Score = 34.3 bits (77), Expect = 1.4 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +2 Query: 71 PAKPRRGSFEVTLLRPDGSSVELWTGIKKGPPRKLKFPEPQEVVKELKKHL 121 P P+ E+ L +S E+ IKK P+K KFP P + E KHL Sbjct: 329045 PNLPKLNREEIQNLNRPITSSEIEAVIKKNSPQKTKFPRPDGLTGESTKHL 329197 >gi|472267802|gb|KB716855.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02149, whole genome shotgun sequence Length = 450417 Score = 32.3 bits (72), Expect = 5.4 Identities = 17/43 (39%), Positives = 24/43 (55%) Frame = -1 Query: 70 NPAKPRRGSFEVTLLRPDGSSVELWTGIKKGPPRKLKFPEPQE 112 +P +PR G+ T L D SV L T + +GP R L P+ Q+ Sbjct: 88995 DPRRPRTGAGRETALDRDKDSVVLRTELGQGPARHLGSPQSQD 88867 >gi|472267837|gb|KB716820.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02114, whole genome shotgun sequence Length = 476632 Score = 31.6 bits (70), Expect = 9.1 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +3 Query: 85 RPDGSSVELWTGIKKGPPRKLKFPEPQEVVKELKKHL 121 RP G S LW G ++ P L + +P + + L +HL Sbjct: 263127 RPHGGSAGLWEGTRQALPSPLSWKQPVAIEQTLTEHL 263237 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 3,087,506,849 Number of sequences in database: 5788 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa.01 Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 69,379,310 Number of sequences in database: 10,922 Lambda K H 0.313 0.130 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 337,588,988 Number of Sequences: 16710 Number of extensions: 4492112 Number of successful extensions: 14855 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 678 Number of HSP's successfully gapped in prelim test: 367 Number of HSP's that attempted gapping in prelim test: 13373 Number of HSP's gapped (non-prelim): 3518 length of query: 122 length of database: 1,052,295,386 effective HSP length: 97 effective length of query: 25 effective length of database: 1,050,674,516 effective search space: 26266862900 effective search space used: 26266862900 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 70 (31.6 bits)