TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000070_2.0 # Protein # Selenoprotein H (SelH) # Walrus
(Odobenus rosmarus)
(122 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472269976|gb|KB714713.1| Leptonychotes weddellii isolate WS11... 184 1e-45
gi|472269882|gb|KB714807.1| Leptonychotes weddellii isolate WS11... 140 1e-34
gi|472267969|gb|KB716688.1| Leptonychotes weddellii isolate WS11... 36 0.37
gi|472268859|gb|KB715798.1| Leptonychotes weddellii isolate WS11... 34 1.4
gi|472267802|gb|KB716855.1| Leptonychotes weddellii isolate WS11... 32 5.4
gi|472267837|gb|KB716820.1| Leptonychotes weddellii isolate WS11... 32 9.1
>gi|472269976|gb|KB714713.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00007, whole genome
shotgun sequence
Length = 6702950
Score = 184 bits (466), Expect = 1e-45
Identities = 92/95 (96%), Positives = 93/95 (97%)
Frame = -3
Query: 28 RKAVEAATVVIEHCTSXRVYGRNAAALSQALRLETPELPVEVNPAKPRRGSFEVTLLRPD 87
RKAVEAATVVIEHCTS RVYGRNAAALSQALRLETPELPVEVNPAKPRRGS EVTLLRPD
Sbjct: 3686562 RKAVEAATVVIEHCTS*RVYGRNAAALSQALRLETPELPVEVNPAKPRRGSLEVTLLRPD 3686383
Query: 88 GSSVELWTGIKKGPPRKLKFPEPQEVVKELKKHLS 122
GSSVELWTGI+KGPPRKLKFPEPQEVVKELKKHLS
Sbjct: 3686382 GSSVELWTGIQKGPPRKLKFPEPQEVVKELKKHLS 3686278
>gi|472269882|gb|KB714807.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00101, whole genome
shotgun sequence
Length = 2603626
Score = 140 bits (353), Expect(2) = 1e-34
Identities = 79/120 (65%), Positives = 80/120 (66%), Gaps = 39/120 (32%)
Frame = -1
Query: 42 TSXRVYGRNAAALSQALRLETPELPVEVNPAKPRRGSFEVTLLRPDGSS----------- 90
TS RVYGRNAAALSQALRLETP+LPVEVNPAKPRRGSFEVTLLRPDGSS
Sbjct: 750682 TS*RVYGRNAAALSQALRLETPDLPVEVNPAKPRRGSFEVTLLRPDGSSEWRPGSRREAL 750503
Query: 91 ----------------------------VELWTGIKKGPPRKLKFPEPQEVVKELKKHLS 122
VELWTGIKKGPPRKLKFPEPQEVVKELKKHLS
Sbjct: 750502 GSARGHLGIWGTCWCIPK*LRFLGLFPGVELWTGIKKGPPRKLKFPEPQEVVKELKKHLS 750323
Score = 28.1 bits (61), Expect(2) = 1e-34
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -2
Query: 28 RKAVEAATVVIEH 40
RKAVEAATVVIEH
Sbjct: 750810 RKAVEAATVVIEH 750772
>gi|472267969|gb|KB716688.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01982, whole genome
shotgun sequence
Length = 484971
Score = 36.2 bits (82), Expect = 0.37
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -3
Query: 45 RVYGRNAAALSQALRLETPELPVEVN-PAKPRRGSFEVT--LLRPDGSSVELWTGIKKGP 101
R A +L+ A P +P EV +P GS LRP+G V +W G GP
Sbjct: 161428 RTSSLRAGSLAWAAPPARPPVPREVTGKTEPPHGSGNEAGGSLRPEG*EVMVWLGGAVGP 161249
Query: 102 PRKLKFPEPQEVVKEL 117
KL+ P+P+ V+ L
Sbjct: 161248 LTKLRRPQPEGAVQSL 161201
>gi|472268859|gb|KB715798.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01092, whole genome
shotgun sequence
Length = 785425
Score = 34.3 bits (77), Expect = 1.4
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +2
Query: 71 PAKPRRGSFEVTLLRPDGSSVELWTGIKKGPPRKLKFPEPQEVVKELKKHL 121
P P+ E+ L +S E+ IKK P+K KFP P + E KHL
Sbjct: 329045 PNLPKLNREEIQNLNRPITSSEIEAVIKKNSPQKTKFPRPDGLTGESTKHL 329197
>gi|472267802|gb|KB716855.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02149, whole genome
shotgun sequence
Length = 450417
Score = 32.3 bits (72), Expect = 5.4
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 70 NPAKPRRGSFEVTLLRPDGSSVELWTGIKKGPPRKLKFPEPQE 112
+P +PR G+ T L D SV L T + +GP R L P+ Q+
Sbjct: 88995 DPRRPRTGAGRETALDRDKDSVVLRTELGQGPARHLGSPQSQD 88867
>gi|472267837|gb|KB716820.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02114, whole genome
shotgun sequence
Length = 476632
Score = 31.6 bits (70), Expect = 9.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 85 RPDGSSVELWTGIKKGPPRKLKFPEPQEVVKELKKHL 121
RP G S LW G ++ P L + +P + + L +HL
Sbjct: 263127 RPHGGSAGLWEGTRQALPSPLSWKQPVAIEQTLTEHL 263237
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.313 0.130 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 337,588,988
Number of Sequences: 16710
Number of extensions: 4492112
Number of successful extensions: 14855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 367
Number of HSP's that attempted gapping in prelim test: 13373
Number of HSP's gapped (non-prelim): 3518
length of query: 122
length of database: 1,052,295,386
effective HSP length: 97
effective length of query: 25
effective length of database: 1,050,674,516
effective search space: 26266862900
effective search space used: 26266862900
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 70 (31.6 bits)