TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000070_2.0 # Protein # Selenoprotein H (SelH) # Walrus
(Odobenus rosmarus)
         (122 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472269976|gb|KB714713.1| Leptonychotes weddellii isolate WS11...   184   1e-45
gi|472269882|gb|KB714807.1| Leptonychotes weddellii isolate WS11...   140   1e-34
gi|472267969|gb|KB716688.1| Leptonychotes weddellii isolate WS11...    36   0.37 
gi|472268859|gb|KB715798.1| Leptonychotes weddellii isolate WS11...    34   1.4  
gi|472267802|gb|KB716855.1| Leptonychotes weddellii isolate WS11...    32   5.4  
gi|472267837|gb|KB716820.1| Leptonychotes weddellii isolate WS11...    32   9.1  

>gi|472269976|gb|KB714713.1| Leptonychotes weddellii isolate WS11-02
               unplaced genomic scaffold scaffold00007, whole genome
               shotgun sequence
          Length = 6702950

 Score =  184 bits (466), Expect = 1e-45
 Identities = 92/95 (96%), Positives = 93/95 (97%)
 Frame = -3

Query: 28      RKAVEAATVVIEHCTSXRVYGRNAAALSQALRLETPELPVEVNPAKPRRGSFEVTLLRPD 87
               RKAVEAATVVIEHCTS RVYGRNAAALSQALRLETPELPVEVNPAKPRRGS EVTLLRPD
Sbjct: 3686562 RKAVEAATVVIEHCTS*RVYGRNAAALSQALRLETPELPVEVNPAKPRRGSLEVTLLRPD 3686383

Query: 88      GSSVELWTGIKKGPPRKLKFPEPQEVVKELKKHLS 122
               GSSVELWTGI+KGPPRKLKFPEPQEVVKELKKHLS
Sbjct: 3686382 GSSVELWTGIQKGPPRKLKFPEPQEVVKELKKHLS 3686278


>gi|472269882|gb|KB714807.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00101, whole genome
              shotgun sequence
          Length = 2603626

 Score =  140 bits (353), Expect(2) = 1e-34
 Identities = 79/120 (65%), Positives = 80/120 (66%), Gaps = 39/120 (32%)
 Frame = -1

Query: 42     TSXRVYGRNAAALSQALRLETPELPVEVNPAKPRRGSFEVTLLRPDGSS----------- 90
              TS RVYGRNAAALSQALRLETP+LPVEVNPAKPRRGSFEVTLLRPDGSS           
Sbjct: 750682 TS*RVYGRNAAALSQALRLETPDLPVEVNPAKPRRGSFEVTLLRPDGSSEWRPGSRREAL 750503

Query: 91     ----------------------------VELWTGIKKGPPRKLKFPEPQEVVKELKKHLS 122
                                          VELWTGIKKGPPRKLKFPEPQEVVKELKKHLS
Sbjct: 750502 GSARGHLGIWGTCWCIPK*LRFLGLFPGVELWTGIKKGPPRKLKFPEPQEVVKELKKHLS 750323



 Score = 28.1 bits (61), Expect(2) = 1e-34
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -2

Query: 28     RKAVEAATVVIEH 40
              RKAVEAATVVIEH
Sbjct: 750810 RKAVEAATVVIEH 750772


>gi|472267969|gb|KB716688.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold01982, whole genome
              shotgun sequence
          Length = 484971

 Score = 36.2 bits (82), Expect = 0.37
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = -3

Query: 45     RVYGRNAAALSQALRLETPELPVEVN-PAKPRRGSFEVT--LLRPDGSSVELWTGIKKGP 101
              R     A +L+ A     P +P EV    +P  GS       LRP+G  V +W G   GP
Sbjct: 161428 RTSSLRAGSLAWAAPPARPPVPREVTGKTEPPHGSGNEAGGSLRPEG*EVMVWLGGAVGP 161249

Query: 102    PRKLKFPEPQEVVKEL 117
                KL+ P+P+  V+ L
Sbjct: 161248 LTKLRRPQPEGAVQSL 161201


>gi|472268859|gb|KB715798.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold01092, whole genome
              shotgun sequence
          Length = 785425

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +2

Query: 71     PAKPRRGSFEVTLLRPDGSSVELWTGIKKGPPRKLKFPEPQEVVKELKKHL 121
              P  P+    E+  L    +S E+   IKK  P+K KFP P  +  E  KHL
Sbjct: 329045 PNLPKLNREEIQNLNRPITSSEIEAVIKKNSPQKTKFPRPDGLTGESTKHL 329197


>gi|472267802|gb|KB716855.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold02149, whole genome
             shotgun sequence
          Length = 450417

 Score = 32.3 bits (72), Expect = 5.4
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 70    NPAKPRRGSFEVTLLRPDGSSVELWTGIKKGPPRKLKFPEPQE 112
             +P +PR G+   T L  D  SV L T + +GP R L  P+ Q+
Sbjct: 88995 DPRRPRTGAGRETALDRDKDSVVLRTELGQGPARHLGSPQSQD 88867


>gi|472267837|gb|KB716820.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold02114, whole genome
              shotgun sequence
          Length = 476632

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 85     RPDGSSVELWTGIKKGPPRKLKFPEPQEVVKELKKHL 121
              RP G S  LW G ++  P  L + +P  + + L +HL
Sbjct: 263127 RPHGGSAGLWEGTRQALPSPLSWKQPVAIEQTLTEHL 263237


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.313    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 337,588,988
Number of Sequences: 16710
Number of extensions: 4492112
Number of successful extensions: 14855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 367
Number of HSP's that attempted gapping in prelim test: 13373
Number of HSP's gapped (non-prelim): 3518
length of query: 122
length of database: 1,052,295,386
effective HSP length: 97
effective length of query: 25
effective length of database: 1,050,674,516
effective search space: 26266862900
effective search space used: 26266862900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 70 (31.6 bits)