Command line: [exonerate -m p2g --showtargetgff -q ./sel15.fa -t sel15.carpeta/genomic.fa] Hostname: [ws116037] C4 Alignment: ------------ Query: SPP00000067_2.0 # Protein # 15 kDa selenoprotein (Sel15) # Human (Homo sapiens) Target: gi|472268923|gb|KB715734.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01028, whole genome shotgun sequence Model: protein2genome:local Raw score: 765 Query range: 0 -> 162 Target range: 414886 -> 469084 1 : MetAlaAlaGlyProSerGlyCysLeuValProAlaPheGlyLeuArgLeuLeuLeuA : 20 |||||||||||||||.!!|||! ||| !! !||||||||||||||||||||||||| MetAlaAlaGlyProGlyGlyLeuLeuProLeuAlaPheGlyLeuArgLeuLeuLeuA 414887 : ATGGCGGCTGGGCCGGGTGGATTGCTCCCGCTGGCGTTTGGGCTGCGTTTGCTCTTGG : 414944 21 : laThrValLeuGlnAla >>>> Target Intron 1 >>>> ValSerAlaPhe : 29 ||.!!|||||||||.!! 8279 bp |||||||||||| laAlaValLeuGlnThr++ ++ValSerAlaPhe 414945 : CTGCTGTACTTCAAACGgt.........................agGTATCTGCATTC : 423250 30 : GlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuLeuC : 49 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuLeuC 423251 : GGGGCAGAGTTTTCATCAGAGGCTTGCAGAGAGTTAGGCTTCTCCAGCAACTTGCTCT : 423310 50 : ysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysAr : 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysAr 423311 : GCAGCTCTTGTGATCTTCTTGGACAGTTTAACCTGCTTCAGCTCGATCCTGACTGTAG : 423367 69 : gGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys >>>> Target Intr : 82 |||||||||||||||||||||||||||||||||||||||| 20873 b gGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys++ 423368 : AGGATGCTGTCAGGAAGAAGCACAATTTGAAACAAAAAAGgt................ : 423411 83 : on 2 >>>> LeuTyrAlaGlyAlaIleLeuGluValCysGlyUnkLysLeuGlyAr : 97 p ||||||||||||||||||||||||||||||||| ||||||||||| ++LeuTyrAlaGlyAlaIleLeuGluValCysGly***LysLeuGlyAr 423412 : .........agCTTTATGCAGGTGCTATTCTTGAAGTTTGTGGATGAAAATTGGGGAG : 444327 98 : gPheProGlnValGln{A} >>>> Target Intron 3 >>>> {la}PheVal : 105 ||||||||||||||||{|} 21745 bp {||}|||||| gPheProGlnValGln{A}++ ++{la}PheVal 444328 : GTTCCCTCAAGTCCAA{G}gt.........................ag{CT}TTTGTC : 466096 106 : ArgSerAspLysProLysLeuPheArgGlyLeuGlnIleLys >>>> Target In : 120 |||||||||||||||||||||||||||||||||||||||||| 2815 ArgSerAspLysProLysLeuPheArgGlyLeuGlnIleLys++ 466097 : AGGAGTGATAAACCCAAACTATTCAGAGGACTACAAATCAAGgt.............. : 466143 121 : tron 4 >>>> TyrValArgGlySerAspProValLeuLysLeuLeuAspAspAsn : 134 bp ||||||||||||||||||||||||||||||||||||||||||||| ++TyrValArgGlySerAspProValLeuLysLeuLeuAspAspAsn 466144 : ...........agTATGTTCGGGGTTCAGATCCTGTATTAAAGCTCTTGGATGACAAC : 468998 135 : GlyAsnIleAlaGluGluLeuSerIleLeuLysTrpAsnThrAspSerValGluGluP : 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlyAsnIleAlaGluGluLeuSerIleLeuLysTrpAsnThrAspSerValGluGluP 468999 : GGGAACATTGCTGAAGAATTAAGCATCCTCAAATGGAACACAGACAGTGTAGAAGAAT : 469058 155 : heLeuSerGluLysLeuGluArgIle : 162 |||||||||||||||||||||||||| heLeuSerGluLysLeuGluArgIle 469059 : TCCTGAGTGAAAAGTTGGAACGCATA : 469084 vulgar: SPP00000067_2.0 0 162 . gi|472268923|gb|KB715734.1| 414886 469084 + 765 M 25 75 5 0 2 I 0 8275 3 0 2 M 56 168 5 0 2 I 0 20869 3 0 2 M 21 63 S 0 1 5 0 2 I 0 21741 3 0 2 S 1 2 M 16 48 5 0 2 I 0 2811 3 0 2 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2013-11-11 ##type DNA # # # seqname source feature start end score strand frame attributes # gi|472268923|gb|KB715734.1| exonerate:protein2genome:local gene 414887 469084 765 + . gene_id 1 ; sequence SPP00000067_2.0 ; gene_orientation + gi|472268923|gb|KB715734.1| exonerate:protein2genome:local cds 414887 414961 . + . gi|472268923|gb|KB715734.1| exonerate:protein2genome:local exon 414887 414961 . + . insertions 0 ; deletions 0 gi|472268923|gb|KB715734.1| exonerate:protein2genome:local splice5 414962 414963 . + . intron_id 1 ; splice_site "GT" gi|472268923|gb|KB715734.1| exonerate:protein2genome:local intron 414962 423240 . + . intron_id 1 gi|472268923|gb|KB715734.1| exonerate:protein2genome:local splice3 423239 423240 . + . intron_id 0 ; splice_site "AG" gi|472268923|gb|KB715734.1| exonerate:protein2genome:local cds 423241 423408 . + . gi|472268923|gb|KB715734.1| exonerate:protein2genome:local exon 423241 423408 . + . insertions 0 ; deletions 0 gi|472268923|gb|KB715734.1| exonerate:protein2genome:local splice5 423409 423410 . + . intron_id 2 ; splice_site "GT" gi|472268923|gb|KB715734.1| exonerate:protein2genome:local intron 423409 444281 . + . intron_id 2 gi|472268923|gb|KB715734.1| exonerate:protein2genome:local splice3 444280 444281 . + . intron_id 1 ; splice_site "AG" gi|472268923|gb|KB715734.1| exonerate:protein2genome:local cds 444282 444345 . + . gi|472268923|gb|KB715734.1| exonerate:protein2genome:local exon 444282 444345 . + . insertions 0 ; deletions 0 gi|472268923|gb|KB715734.1| exonerate:protein2genome:local splice5 444346 444347 . + . intron_id 3 ; splice_site "GT" gi|472268923|gb|KB715734.1| exonerate:protein2genome:local intron 444346 466090 . + . intron_id 3 gi|472268923|gb|KB715734.1| exonerate:protein2genome:local splice3 466089 466090 . + . intron_id 2 ; splice_site "AG" gi|472268923|gb|KB715734.1| exonerate:protein2genome:local cds 466091 466140 . + . gi|472268923|gb|KB715734.1| exonerate:protein2genome:local exon 466091 466140 . + . insertions 0 ; deletions 0 gi|472268923|gb|KB715734.1| exonerate:protein2genome:local splice5 466141 466142 . + . intron_id 4 ; splice_site "GT" gi|472268923|gb|KB715734.1| exonerate:protein2genome:local intron 466141 468955 . + . intron_id 4 gi|472268923|gb|KB715734.1| exonerate:protein2genome:local splice3 468954 468955 . + . intron_id 3 ; splice_site "AG" gi|472268923|gb|KB715734.1| exonerate:protein2genome:local cds 468956 469084 . + . gi|472268923|gb|KB715734.1| exonerate:protein2genome:local exon 468956 469084 . + . insertions 0 ; deletions 0 gi|472268923|gb|KB715734.1| exonerate:protein2genome:local similarity 414887 469084 765 + . alignment_id 1 ; Query SPP00000067_2.0 ; Align 414887 1 75 ; Align 423241 26 168 ; Align 444282 82 63 ; Align 466093 104 48 ; Align 468956 120 129 # --- END OF GFF DUMP --- # -- completed exonerate analysis