TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000067_2.0 # Protein # 15 kDa selenoprotein (Sel15) #
Human (Homo sapiens)
         (162 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472268923|gb|KB715734.1| Leptonychotes weddellii isolate WS11...    93   5e-18
gi|472269924|gb|KB714765.1| Leptonychotes weddellii isolate WS11...    37   0.47 

>gi|472268923|gb|KB715734.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold01028, whole genome
              shotgun sequence
          Length = 828836

 Score = 92.8 bits (229), Expect = 5e-18
 Identities = 45/62 (72%), Positives = 47/62 (75%)
 Frame = +1

Query: 26     VSAFGAEFSSEACRELGFXXXXXXXXXXXXGQFNLLQLDPDCRGCCQEEAQFETKKLYAG 85
              VSAFGAEFSSEACRELGF            GQFNLLQLDPDCRGCCQEEAQFETKK+   
Sbjct: 423241 VSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKVLFS 423420

Query: 86     AI 87
              +I
Sbjct: 423421 SI 423426



 Score = 88.2 bits (217), Expect = 1e-16
 Identities = 43/43 (100%), Positives = 43/43 (100%)
 Frame = +2

Query: 120    YVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI 162
              YVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI
Sbjct: 468956 YVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI 469084



 Score = 43.1 bits (100), Expect = 0.005
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = +3

Query: 82     LYAGAILEVCGUKLGRFPQVQ 102
              LYAGAILEVCG KLGRFPQVQ
Sbjct: 444282 LYAGAILEVCG*KLGRFPQVQ 444344



 Score = 40.0 bits (92), Expect = 0.042
 Identities = 21/27 (77%), Positives = 21/27 (77%)
 Frame = +2

Query: 1      MAAGPSGCLVPAFGLRLLLATVLQAVS 27
              MAAGP G L  AFGLRLLLA VLQ VS
Sbjct: 414887 MAAGPGGLLPLAFGLRLLLAAVLQTVS 414967



 Score = 38.5 bits (88), Expect = 0.12
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = +1

Query: 103    AFVRSDKPKLFRGLQIKYVRG 123
              AFVRSDKPKLFRGLQIK VRG
Sbjct: 466090 AFVRSDKPKLFRGLQIK-VRG 466149


>gi|472269924|gb|KB714765.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold00059, whole genome
             shotgun sequence
          Length = 3449337

 Score = 36.6 bits (83), Expect = 0.47
 Identities = 40/106 (37%), Positives = 49/106 (46%)
 Frame = +2

Query: 16    RLLLATVLQAVSAFGAEFSSEACRELGFXXXXXXXXXXXXGQFNLLQLDPDCRGCCQEEA 75
             RLLLAT+  A+SAFGA FSSEA   + F                LLQL P+     Q E 
Sbjct: 77060 RLLLATM**ALSAFGAVFSSEAPALVTF----------------LLQLAPN*GEHDQREV 77191

Query: 76    QFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYV 121
             + + +KL       VC  K  + P +      D     RGLQIKYV
Sbjct: 77192 RLDNRKL---GTCNVC-RKPRKLPSI-----CDSS---RGLQIKYV 77293


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.322    0.140    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,326,839
Number of Sequences: 16710
Number of extensions: 5540395
Number of successful extensions: 16561
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 16036
Number of HSP's gapped (non-prelim): 1326
length of query: 162
length of database: 1,052,295,386
effective HSP length: 121
effective length of query: 41
effective length of database: 1,050,273,476
effective search space: 43061212516
effective search space used: 43061212516
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 72 (32.3 bits)