Command line: [exonerate -m p2g --showtargetgff -q ./eEFSec.fa -t eEFSec.carpeta/genomic.fa]
Hostname: [ws101135]

C4 Alignment:
------------
         Query: SPP00000144_2.0 # Protein # Eukaryotic elongation factor (eEFSec) # Walrus (Odobenus rosmarus)
        Target: gi|472269049|gb|KB715608.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00902, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1661
   Query range: 261 -> 595
  Target range: 513387 -> 576521

    262 : LysValValLysLysValLysSerMetGlnMetPheHisMetProValThrSerAlaM :    281
          :::|||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlnValValLysLysValLysSerMetGlnMetPheHisMetProValThrSerAlaM
 513388 : CAGGTGGTGAAGAAGGTGAAGTCCATGCAGATGTTTCACATGCCTGTCACCTCAGCCA : 513445

    282 : etGlnGlyAspArgLeuGlyIleCysValThrGlnPheAspProLysLeuLeuGluAr :    300
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          etGlnGlyAspArgLeuGlyIleCysValThrGlnPheAspProLysLeuLeuGluAr
 513446 : TGCAGGGAGACCGACTGGGCATCTGCGTCACCCAGTTTGACCCCAAGCTACTGGAGCG : 513502

    301 : gGlyLeuValCysAlaProGluSerLeuHisThrValHisAlaAlaIleIleSerVal :    319
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          gGlyLeuValCysAlaProGluSerLeuHisThrValHisAlaAlaIleIleSerVal
 513503 : TGGCCTGGTGTGTGCCCCTGAGTCCCTGCACACTGTCCACGCAGCCATCATCTCTGTG : 513559

    320 : GluLysIleProTyrPheArgGlyProLeuGlnThrLysAlaLysPheHisIleThrV :    339
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluLysIleProTyrPheArgGlyProLeuGlnThrLysAlaLysPheHisIleThrV
 513560 : GAGAAGATCCCGTATTTCCGGGGGCCCCTGCAGACCAAAGCCAAGTTCCACATCACGG : 513619

    340 : alGlyHisGluThrValMetGlyArgLeuMetPhePheSerLeuAlaProAspSerPh :    358
          |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
          alGlyHisGluThrValMetGlyArgLeuMetPhePheSerProAlaProAspSerPh
 513620 : TGGGCCATGAGACAGTCATGGGCCGGTTGATGTTCTTCAGCCCTGCCCCCGATAGCTT : 513676

    359 : eAspHisGluProValLeuAspSerPheAspPheSerArgGluTyrLeuPheGlnGlu :    377
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          eAspHisGluProValLeuAspSerPheAspPheSerArgGluTyrLeuPheGlnGlu
 513677 : TGACCATGAGCCTGTGCTGGACTCCTTCGACTTCTCTCGAGAATACCTCTTCCAGGAG : 513733

    378 : GlnTyrLeuAspLysAspLeuAlaProValAlaThrAspSerAspGluAlaAsnLysL :    397
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlnTyrLeuAspLysAspLeuAlaProValAlaThrAspSerAspGluAlaAsnLysL
 513734 : CAGTACCTAGATAAGGATTTGGCACCAGTGGCGACAGACAGTGATGAGGCTAACAAGA : 513793

    398 : ysThrGlyGlnAlaThrGluGlyCysCysProArgGlnGlnTrpAlaLeuValGluPh :    416
          |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||
          ysThrGlyGlnAlaThrGluGlyArgCysProArgGlnGlnTrpAlaLeuValGluPh
 513794 : AGACGGGCCAGGCTACAGAAGGCCGCTGCCCTCGGCAGCAGTGGGCCCTCGTGGAATT : 513850

    417 : eGluLysProValThrCysProArgLeuCysLeuValIleGlySerArgLeuAspAla :    435
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          eGluLysProValThrCysProArgLeuCysLeuValIleGlySerArgLeuAspAla
 513851 : TGAGAAGCCTGTCACCTGCCCTCGGCTGTGCCTGGTGATTGGCTCCAGGCTAGATGCG : 513907

    436 : AspIleHisAlaAsnMetCysArgLeuAlaPheHisGlyValLeuLeuHisGlyLeuG :    455
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AspIleHisAlaAsnMetCysArgLeuAlaPheHisGlyValLeuLeuHisGlyLeuG
 513908 : GACATTCATGCCAACATGTGCCGACTGGCCTTCCATGGTGTCCTGCTCCATGGGCTGG : 513967

    456 : luAspLysAspTyrAlaGluSerPheLeuProArgLeuLysValTyrLysLeuLysHi :    474
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          luAspLysAspTyrAlaGluSerPheLeuProArgLeuLysValTyrLysLeuLysHi
 513968 : AGGACAAGGACTATGCTGAGAGCTTCTTGCCCAGGCTGAAAGTGTATAAGCTCAAGCA : 514024

    475 : sLysHisGlyLeuValGluArg  >>>> Target Intron 1 >>>>  ValMetA :    484
          ||||||||||||||||||||||           16667 bp          |||||||
          sLysHisGlyLeuValGluArg++                         ++ValMetA
 514025 : CAAACATGGCCTTGTAGAACGGgt.........................agGTGATGG : 530721

    485 : spAspHisSerValIleGlyArgSerLeuPheLysLysGluThrAsnIleGlnLeuPh :    503
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          spAspHisSerValIleGlyArgSerLeuPheLysLysGluThrAsnIleGlnLeuPh
 530722 : ATGACCACAGCGTGATCGGCCGCTCCCTGTTCAAAAAGGAGACCAACATCCAGCTCTT : 530778

    504 : eValGlyLeuLysValTyrLeuSerThrGlyGluLeuGlyValIleAspSerAlaPhe :    522
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          eValGlyLeuLysValTyrLeuSerThrGlyGluLeuGlyValIleAspSerAlaPhe
 530779 : TGTGGGCCTCAAGGTGTACCTATCCACCGGGGAGCTGGGGGTCATCGACAGCGCCTTC : 530835

    523 : GlyGlnSerGlyLysPheLysIleHisIlePro{G}  >>>> Target Intron 2 :    534
          |||||||||||||||||||||||||||||||||{|}           45462 bp   
          GlyGlnSerGlyLysPheLysIleHisIlePro{G}++                    
 530836 : GGCCAGAGTGGCAAGTTCAAGATCCACATCCCT{G}gt.................... : 530874

    535 :  >>>>  {ly}GlyLeuSerSerGluSerLysLysIleLeuThrProThrLeuLysLy :    550
                 {||}|||||||||   |||||||||||||||||||||||||||||||||||
               ++{ly}GlyLeuSerProGluSerLysLysIleLeuThrProThrLeuLysLy
 530875 : .....ag{GC}GGCCTCAGCCCCGAGTCCAAGAAGATTCTAACACCCACCCTCAAGAA : 576381

    551 : sArgGlyArgAlaGlyArg<->GluAlaAlaLysLeuGluGluLeuAlaGluArgSer :    568
          |||||||||||||||||||   ||||||||||||   ||||||:::||||||||||||
          sArgGlyArgAlaGlyArgGlyGluAlaAlaLysGlnGluGluValAlaGluArgSer
 576382 : GCGGGGCCGGGCCGGCCGAGGAGAAGCAGCCAAGCAGGAGGAGGTGGCCGAGCGGTCT : 576438

    569 : GluProAlaGlnHisValAlaLeuSerLeuSerPheLysArgTyrValPheAspThrH :    588
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluProAlaGlnHisValAlaLeuSerLeuSerPheLysArgTyrValPheAspThrH
 576439 : GAGCCTGCGCAGCACGTGGCCCTCAGCCTGTCTTTCAAGCGTTACGTCTTTGACACCC : 576498

    589 : isLysArgMetValGlnSerPro :    595
          |||||||||||||||||||||||
          isLysArgMetValGlnSerPro
 576499 : ACAAGCGCATGGTCCAGTCTCCC : 576521

vulgar: SPP00000144_2.0 261 595 . gi|472269049|gb|KB715608.1| 513387 576521 + 1661 M 220 660 5 0 2 I 0 16663 3 0 2 M 52 156 S 0 1 5 0 2 I 0 45458 3 0 2 S 1 2 M 22 66 G 0 3 M 39 117
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	gene	513388	576521	1661	+	.	gene_id 1 ; sequence SPP00000144_2.0 ; gene_orientation +
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	cds	513388	514047	.	+	.	
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	exon	513388	514047	.	+	.	insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	splice5	514048	514049	.	+	.	intron_id 1 ; splice_site "GT"
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	intron	514048	530714	.	+	.	intron_id 1
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	splice3	530713	530714	.	+	.	intron_id 0 ; splice_site "AG"
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	cds	530715	530871	.	+	.	
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	exon	530715	530871	.	+	.	insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	splice5	530872	530873	.	+	.	intron_id 2 ; splice_site "GT"
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	intron	530872	576333	.	+	.	intron_id 2
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	splice3	576332	576333	.	+	.	intron_id 1 ; splice_site "AG"
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	cds	576334	576521	.	+	.	
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	exon	576334	576521	.	+	.	insertions 3 ; deletions 0
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	similarity	513388	576521	1661	+	.	alignment_id 1 ; Query SPP00000144_2.0 ; Align 513388 262 660 ; Align 530715 482 156 ; Align 576336 535 66 ; Align 576405 557 117
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000144_2.0 # Protein # Eukaryotic elongation factor (eEFSec) # Walrus (Odobenus rosmarus)
        Target: gi|472269049|gb|KB715608.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00902, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 512
   Query range: 71 -> 197
  Target range: 328562 -> 587204

     72 : ProAlaAlaSerGlyAlaGluProGlyProGlyGluProGlnLeuGlnValThrLeuV :     91
          ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
          ProAlaAlaSerGlyAlaGluProGluProGlyGluProGlnLeuGlnValThrLeuV
 328563 : CCGGCGGCGTCCGGAGCCGAGCCCGAGCCCGGCGAGCCGCAGCTTCAGGTCACGCTGG : 328620

     92 : alAspCysProGlyHisAlaSerLeuIleArgThrIleIleGly{G}  >>>> Targ :    106
          ||||||||||||||||||||||||||||||||||||||||||||{|}           
          alAspCysProGlyHisAlaSerLeuIleArgThrIleIleGly{G}++         
 328621 : TCGACTGCCCCGGGCACGCCTCCCTCATCCGGACCATCATTGGC{G}gt......... : 328668

    107 : et Intron 1 >>>>  {ly}AlaGlnIleIleAspLeuMetMetLeuValIleAsp :    118
          84926 bp          {||}||||||||||||||||||||||||||||||||||||
                          ++{ly}AlaGlnIleIleAspLeuMetMetLeuValIleAsp
 328669 : ................ag{GG}GCCCAGATCATTGATCTGATGATGCTGGTCATTGAT : 413627

    119 : ValThrLysGlyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIleAlaC :    138
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValThrLysGlyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIleAlaC
 413628 : GTGACCAAAGGGATGCAGACCCAGTCAGCGGAGTGCCTTGTGATTGGGCAGATCGCCT : 413687

    139 : ysGlnLysLeuValValValLeuAsnLysIleAspLeuLeuAlaGluGlyLysArgGl :    157
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ysGlnLysLeuValValValLeuAsnLysIleAspLeuLeuAlaGluGlyLysArgGl
 413688 : GCCAGAAGCTGGTTGTGGTGCTGAACAAAATAGACCTCTTAGCTGAAGGGAAGAGACA : 413744

    158 : nAlaAlaIleAspLysMetThrLysLysMetGlnArgThrLeuGluAsnThr{Ly}   :    175
          ||||||||||||||||||||||||||||||||||||||||||||||||||||{||}  
          nAlaAlaIleAspLysMetThrLysLysMetGlnArgThrLeuGluAsnThr{Ly}++
 413745 : GGCAGCGATTGATAAAATGACCAAGAAAATGCAGAGGACCCTGGAGAACACC{AA}gt : 413800

    176 : >>>> Target Intron 2 >>>>  {s}PheArgGlyAlaProIleIleProValA :    185
                  173338 bp          {|}:::   ...               ::::
                                   +-{s}TyrLeuAlaTyrLeuProProLeuLeuS
 413801 : .........................aa{A}TATCTTGCTTATTTACCTCCCTTGTTGT : 587166

    186 : laAlaLysProGlyGlyProGluAlaProGluThrGlu :    197
          ::|||...|||   |||      |||||||||||||||
          erAlaSerProThrGlyThr***AlaProGluThrGlu
 587167 : CAGCGTCCCCCACGGGAACATGAGCTCCAGAGACAGAA : 587204

vulgar: SPP00000144_2.0 71 197 . gi|472269049|gb|KB715608.1| 328562 587204 + 512 M 34 102 S 0 1 5 0 2 I 0 84922 3 0 2 S 1 2 M 68 204 S 0 2 5 0 2 I 0 173334 3 0 2 S 1 1 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	gene	328563	587204	512	+	.	gene_id 2 ; sequence SPP00000144_2.0 ; gene_orientation +
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	cds	328563	328665	.	+	.	
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	exon	328563	328665	.	+	.	insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	splice5	328666	328667	.	+	.	intron_id 1 ; splice_site "GT"
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	intron	328666	413591	.	+	.	intron_id 1
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	splice3	413590	413591	.	+	.	intron_id 0 ; splice_site "AG"
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	cds	413592	413799	.	+	.	
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	exon	413592	413799	.	+	.	insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	splice5	413800	413801	.	+	.	intron_id 2 ; splice_site "GT"
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	intron	413800	587137	.	+	.	intron_id 2
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	splice3	587136	587137	.	+	.	intron_id 1 ; splice_site "AA"
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	cds	587138	587204	.	+	.	
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	exon	587138	587204	.	+	.	insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1|	exonerate:protein2genome:local	similarity	328563	587204	512	+	.	alignment_id 2 ; Query SPP00000144_2.0 ; Align 328563 72 102 ; Align 413594 107 204 ; Align 587139 176 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis