Command line: [exonerate -m p2g --showtargetgff -q ./eEFSec.fa -t eEFSec.carpeta/genomic.fa]
Hostname: [ws101135]
C4 Alignment:
------------
Query: SPP00000144_2.0 # Protein # Eukaryotic elongation factor (eEFSec) # Walrus (Odobenus rosmarus)
Target: gi|472269049|gb|KB715608.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00902, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 1661
Query range: 261 -> 595
Target range: 513387 -> 576521
262 : LysValValLysLysValLysSerMetGlnMetPheHisMetProValThrSerAlaM : 281
:::|||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlnValValLysLysValLysSerMetGlnMetPheHisMetProValThrSerAlaM
513388 : CAGGTGGTGAAGAAGGTGAAGTCCATGCAGATGTTTCACATGCCTGTCACCTCAGCCA : 513445
282 : etGlnGlyAspArgLeuGlyIleCysValThrGlnPheAspProLysLeuLeuGluAr : 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
etGlnGlyAspArgLeuGlyIleCysValThrGlnPheAspProLysLeuLeuGluAr
513446 : TGCAGGGAGACCGACTGGGCATCTGCGTCACCCAGTTTGACCCCAAGCTACTGGAGCG : 513502
301 : gGlyLeuValCysAlaProGluSerLeuHisThrValHisAlaAlaIleIleSerVal : 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
gGlyLeuValCysAlaProGluSerLeuHisThrValHisAlaAlaIleIleSerVal
513503 : TGGCCTGGTGTGTGCCCCTGAGTCCCTGCACACTGTCCACGCAGCCATCATCTCTGTG : 513559
320 : GluLysIleProTyrPheArgGlyProLeuGlnThrLysAlaLysPheHisIleThrV : 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GluLysIleProTyrPheArgGlyProLeuGlnThrLysAlaLysPheHisIleThrV
513560 : GAGAAGATCCCGTATTTCCGGGGGCCCCTGCAGACCAAAGCCAAGTTCCACATCACGG : 513619
340 : alGlyHisGluThrValMetGlyArgLeuMetPhePheSerLeuAlaProAspSerPh : 358
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
alGlyHisGluThrValMetGlyArgLeuMetPhePheSerProAlaProAspSerPh
513620 : TGGGCCATGAGACAGTCATGGGCCGGTTGATGTTCTTCAGCCCTGCCCCCGATAGCTT : 513676
359 : eAspHisGluProValLeuAspSerPheAspPheSerArgGluTyrLeuPheGlnGlu : 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
eAspHisGluProValLeuAspSerPheAspPheSerArgGluTyrLeuPheGlnGlu
513677 : TGACCATGAGCCTGTGCTGGACTCCTTCGACTTCTCTCGAGAATACCTCTTCCAGGAG : 513733
378 : GlnTyrLeuAspLysAspLeuAlaProValAlaThrAspSerAspGluAlaAsnLysL : 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlnTyrLeuAspLysAspLeuAlaProValAlaThrAspSerAspGluAlaAsnLysL
513734 : CAGTACCTAGATAAGGATTTGGCACCAGTGGCGACAGACAGTGATGAGGCTAACAAGA : 513793
398 : ysThrGlyGlnAlaThrGluGlyCysCysProArgGlnGlnTrpAlaLeuValGluPh : 416
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
ysThrGlyGlnAlaThrGluGlyArgCysProArgGlnGlnTrpAlaLeuValGluPh
513794 : AGACGGGCCAGGCTACAGAAGGCCGCTGCCCTCGGCAGCAGTGGGCCCTCGTGGAATT : 513850
417 : eGluLysProValThrCysProArgLeuCysLeuValIleGlySerArgLeuAspAla : 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
eGluLysProValThrCysProArgLeuCysLeuValIleGlySerArgLeuAspAla
513851 : TGAGAAGCCTGTCACCTGCCCTCGGCTGTGCCTGGTGATTGGCTCCAGGCTAGATGCG : 513907
436 : AspIleHisAlaAsnMetCysArgLeuAlaPheHisGlyValLeuLeuHisGlyLeuG : 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AspIleHisAlaAsnMetCysArgLeuAlaPheHisGlyValLeuLeuHisGlyLeuG
513908 : GACATTCATGCCAACATGTGCCGACTGGCCTTCCATGGTGTCCTGCTCCATGGGCTGG : 513967
456 : luAspLysAspTyrAlaGluSerPheLeuProArgLeuLysValTyrLysLeuLysHi : 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
luAspLysAspTyrAlaGluSerPheLeuProArgLeuLysValTyrLysLeuLysHi
513968 : AGGACAAGGACTATGCTGAGAGCTTCTTGCCCAGGCTGAAAGTGTATAAGCTCAAGCA : 514024
475 : sLysHisGlyLeuValGluArg >>>> Target Intron 1 >>>> ValMetA : 484
|||||||||||||||||||||| 16667 bp |||||||
sLysHisGlyLeuValGluArg++ ++ValMetA
514025 : CAAACATGGCCTTGTAGAACGGgt.........................agGTGATGG : 530721
485 : spAspHisSerValIleGlyArgSerLeuPheLysLysGluThrAsnIleGlnLeuPh : 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
spAspHisSerValIleGlyArgSerLeuPheLysLysGluThrAsnIleGlnLeuPh
530722 : ATGACCACAGCGTGATCGGCCGCTCCCTGTTCAAAAAGGAGACCAACATCCAGCTCTT : 530778
504 : eValGlyLeuLysValTyrLeuSerThrGlyGluLeuGlyValIleAspSerAlaPhe : 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
eValGlyLeuLysValTyrLeuSerThrGlyGluLeuGlyValIleAspSerAlaPhe
530779 : TGTGGGCCTCAAGGTGTACCTATCCACCGGGGAGCTGGGGGTCATCGACAGCGCCTTC : 530835
523 : GlyGlnSerGlyLysPheLysIleHisIlePro{G} >>>> Target Intron 2 : 534
|||||||||||||||||||||||||||||||||{|} 45462 bp
GlyGlnSerGlyLysPheLysIleHisIlePro{G}++
530836 : GGCCAGAGTGGCAAGTTCAAGATCCACATCCCT{G}gt.................... : 530874
535 : >>>> {ly}GlyLeuSerSerGluSerLysLysIleLeuThrProThrLeuLysLy : 550
{||}||||||||| |||||||||||||||||||||||||||||||||||
++{ly}GlyLeuSerProGluSerLysLysIleLeuThrProThrLeuLysLy
530875 : .....ag{GC}GGCCTCAGCCCCGAGTCCAAGAAGATTCTAACACCCACCCTCAAGAA : 576381
551 : sArgGlyArgAlaGlyArg<->GluAlaAlaLysLeuGluGluLeuAlaGluArgSer : 568
||||||||||||||||||| |||||||||||| ||||||:::||||||||||||
sArgGlyArgAlaGlyArgGlyGluAlaAlaLysGlnGluGluValAlaGluArgSer
576382 : GCGGGGCCGGGCCGGCCGAGGAGAAGCAGCCAAGCAGGAGGAGGTGGCCGAGCGGTCT : 576438
569 : GluProAlaGlnHisValAlaLeuSerLeuSerPheLysArgTyrValPheAspThrH : 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GluProAlaGlnHisValAlaLeuSerLeuSerPheLysArgTyrValPheAspThrH
576439 : GAGCCTGCGCAGCACGTGGCCCTCAGCCTGTCTTTCAAGCGTTACGTCTTTGACACCC : 576498
589 : isLysArgMetValGlnSerPro : 595
|||||||||||||||||||||||
isLysArgMetValGlnSerPro
576499 : ACAAGCGCATGGTCCAGTCTCCC : 576521
vulgar: SPP00000144_2.0 261 595 . gi|472269049|gb|KB715608.1| 513387 576521 + 1661 M 220 660 5 0 2 I 0 16663 3 0 2 M 52 156 S 0 1 5 0 2 I 0 45458 3 0 2 S 1 2 M 22 66 G 0 3 M 39 117
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local gene 513388 576521 1661 + . gene_id 1 ; sequence SPP00000144_2.0 ; gene_orientation +
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local cds 513388 514047 . + .
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local exon 513388 514047 . + . insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice5 514048 514049 . + . intron_id 1 ; splice_site "GT"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local intron 514048 530714 . + . intron_id 1
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice3 530713 530714 . + . intron_id 0 ; splice_site "AG"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local cds 530715 530871 . + .
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local exon 530715 530871 . + . insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice5 530872 530873 . + . intron_id 2 ; splice_site "GT"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local intron 530872 576333 . + . intron_id 2
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice3 576332 576333 . + . intron_id 1 ; splice_site "AG"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local cds 576334 576521 . + .
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local exon 576334 576521 . + . insertions 3 ; deletions 0
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local similarity 513388 576521 1661 + . alignment_id 1 ; Query SPP00000144_2.0 ; Align 513388 262 660 ; Align 530715 482 156 ; Align 576336 535 66 ; Align 576405 557 117
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000144_2.0 # Protein # Eukaryotic elongation factor (eEFSec) # Walrus (Odobenus rosmarus)
Target: gi|472269049|gb|KB715608.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00902, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 512
Query range: 71 -> 197
Target range: 328562 -> 587204
72 : ProAlaAlaSerGlyAlaGluProGlyProGlyGluProGlnLeuGlnValThrLeuV : 91
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
ProAlaAlaSerGlyAlaGluProGluProGlyGluProGlnLeuGlnValThrLeuV
328563 : CCGGCGGCGTCCGGAGCCGAGCCCGAGCCCGGCGAGCCGCAGCTTCAGGTCACGCTGG : 328620
92 : alAspCysProGlyHisAlaSerLeuIleArgThrIleIleGly{G} >>>> Targ : 106
||||||||||||||||||||||||||||||||||||||||||||{|}
alAspCysProGlyHisAlaSerLeuIleArgThrIleIleGly{G}++
328621 : TCGACTGCCCCGGGCACGCCTCCCTCATCCGGACCATCATTGGC{G}gt......... : 328668
107 : et Intron 1 >>>> {ly}AlaGlnIleIleAspLeuMetMetLeuValIleAsp : 118
84926 bp {||}||||||||||||||||||||||||||||||||||||
++{ly}AlaGlnIleIleAspLeuMetMetLeuValIleAsp
328669 : ................ag{GG}GCCCAGATCATTGATCTGATGATGCTGGTCATTGAT : 413627
119 : ValThrLysGlyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIleAlaC : 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ValThrLysGlyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIleAlaC
413628 : GTGACCAAAGGGATGCAGACCCAGTCAGCGGAGTGCCTTGTGATTGGGCAGATCGCCT : 413687
139 : ysGlnLysLeuValValValLeuAsnLysIleAspLeuLeuAlaGluGlyLysArgGl : 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ysGlnLysLeuValValValLeuAsnLysIleAspLeuLeuAlaGluGlyLysArgGl
413688 : GCCAGAAGCTGGTTGTGGTGCTGAACAAAATAGACCTCTTAGCTGAAGGGAAGAGACA : 413744
158 : nAlaAlaIleAspLysMetThrLysLysMetGlnArgThrLeuGluAsnThr{Ly} : 175
||||||||||||||||||||||||||||||||||||||||||||||||||||{||}
nAlaAlaIleAspLysMetThrLysLysMetGlnArgThrLeuGluAsnThr{Ly}++
413745 : GGCAGCGATTGATAAAATGACCAAGAAAATGCAGAGGACCCTGGAGAACACC{AA}gt : 413800
176 : >>>> Target Intron 2 >>>> {s}PheArgGlyAlaProIleIleProValA : 185
173338 bp {|}::: ... ::::
+-{s}TyrLeuAlaTyrLeuProProLeuLeuS
413801 : .........................aa{A}TATCTTGCTTATTTACCTCCCTTGTTGT : 587166
186 : laAlaLysProGlyGlyProGluAlaProGluThrGlu : 197
::|||...||| ||| |||||||||||||||
erAlaSerProThrGlyThr***AlaProGluThrGlu
587167 : CAGCGTCCCCCACGGGAACATGAGCTCCAGAGACAGAA : 587204
vulgar: SPP00000144_2.0 71 197 . gi|472269049|gb|KB715608.1| 328562 587204 + 512 M 34 102 S 0 1 5 0 2 I 0 84922 3 0 2 S 1 2 M 68 204 S 0 2 5 0 2 I 0 173334 3 0 2 S 1 1 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local gene 328563 587204 512 + . gene_id 2 ; sequence SPP00000144_2.0 ; gene_orientation +
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local cds 328563 328665 . + .
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local exon 328563 328665 . + . insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice5 328666 328667 . + . intron_id 1 ; splice_site "GT"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local intron 328666 413591 . + . intron_id 1
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice3 413590 413591 . + . intron_id 0 ; splice_site "AG"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local cds 413592 413799 . + .
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local exon 413592 413799 . + . insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice5 413800 413801 . + . intron_id 2 ; splice_site "GT"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local intron 413800 587137 . + . intron_id 2
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice3 587136 587137 . + . intron_id 1 ; splice_site "AA"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local cds 587138 587204 . + .
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local exon 587138 587204 . + . insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local similarity 328563 587204 512 + . alignment_id 2 ; Query SPP00000144_2.0 ; Align 328563 72 102 ; Align 413594 107 204 ; Align 587139 176 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis