Command line: [exonerate -m p2g --showtargetgff -q ./eEFSec.fa -t eEFSec.carpeta/genomic.fa]
Hostname: [ws101135]
C4 Alignment:
------------
Query: SPP00000144_2.0 # Protein # Eukaryotic elongation factor (eEFSec) # Human (Homo sapiens)
Target: gi|472269049|gb|KB715608.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00902, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 1589
Query range: 261 -> 596
Target range: 513387 -> 576521
262 : LysValValLysLysValLysSerMetGlnMetPheHisMetProIleThrSerAlaM : 281
:!!||||||||||||||||||||||||||||||||||||||||||:!!||||||||||
GlnValValLysLysValLysSerMetGlnMetPheHisMetProValThrSerAlaM
513388 : CAGGTGGTGAAGAAGGTGAAGTCCATGCAGATGTTTCACATGCCTGTCACCTCAGCCA : 513445
282 : etGlnGlyAspArgLeuGlyIleCysValThrGlnPheAspProLysLeuLeuGluAr : 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
etGlnGlyAspArgLeuGlyIleCysValThrGlnPheAspProLysLeuLeuGluAr
513446 : TGCAGGGAGACCGACTGGGCATCTGCGTCACCCAGTTTGACCCCAAGCTACTGGAGCG : 513502
301 : gGlyLeuValCysAlaProGluSerLeuHisThrValHisAlaAlaLeuIleSerVal : 319
||||||||||||||||||||||||||||||||||||||||||||||:!!|||||||||
gGlyLeuValCysAlaProGluSerLeuHisThrValHisAlaAlaIleIleSerVal
513503 : TGGCCTGGTGTGTGCCCCTGAGTCCCTGCACACTGTCCACGCAGCCATCATCTCTGTG : 513559
320 : GluLysIleProTyrPheArgGlyProLeuGlnThrLysAlaLysPheHisIleThrV : 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GluLysIleProTyrPheArgGlyProLeuGlnThrLysAlaLysPheHisIleThrV
513560 : GAGAAGATCCCGTATTTCCGGGGGCCCCTGCAGACCAAAGCCAAGTTCCACATCACGG : 513619
340 : alGlyHisGluThrValMetGlyArgLeuMetPhePheSerProAlaProAspAsnPh : 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||!:!||
alGlyHisGluThrValMetGlyArgLeuMetPhePheSerProAlaProAspSerPh
513620 : TGGGCCATGAGACAGTCATGGGCCGGTTGATGTTCTTCAGCCCTGCCCCCGATAGCTT : 513676
359 : eAspGlnGluProIleLeuAspSerPheAsnPheSerGlnGluTyrLeuPheGlnGlu : 377
||||!!.||||||:!:||||||||||||:!!||||||!:!||||||||||||||||||
eAspHisGluProValLeuAspSerPheAspPheSerArgGluTyrLeuPheGlnGlu
513677 : TGACCATGAGCCTGTGCTGGACTCCTTCGACTTCTCTCGAGAATACCTCTTCCAGGAG : 513733
378 : GlnTyrLeuSerLysAspLeuThrProAlaValThrAspAsnAspGluAlaAspLysL : 397
|||||||||..!|||||||||.!!|||!.!!.!||||||!:!|||||||||:!!||||
GlnTyrLeuAspLysAspLeuAlaProValAlaThrAspSerAspGluAlaAsnLysL
513734 : CAGTACCTAGATAAGGATTTGGCACCAGTGGCGACAGACAGTGATGAGGCTAACAAGA : 513793
398 : ysAlaGlyGlnAlaThrGluGlyHisCysProArgGlnGlnTrpAlaLeuValGluPh : 416
||.!!||||||||||||||||||!.!||||||||||||||||||||||||||||||||
ysThrGlyGlnAlaThrGluGlyArgCysProArgGlnGlnTrpAlaLeuValGluPh
513794 : AGACGGGCCAGGCTACAGAAGGCCGCTGCCCTCGGCAGCAGTGGGCCCTCGTGGAATT : 513850
417 : eGluLysProValThrCysProArgLeuCysLeuValIleGlySerArgLeuAspAla : 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
eGluLysProValThrCysProArgLeuCysLeuValIleGlySerArgLeuAspAla
513851 : TGAGAAGCCTGTCACCTGCCCTCGGCTGTGCCTGGTGATTGGCTCCAGGCTAGATGCG : 513907
436 : AspIleHisThrAsnThrCysArgLeuAlaPheHisGlyIleLeuLeuHisGlyLeuG : 455
|||||||||.!!|||! !|||||||||||||||||||||:!!||||||||||||||||
AspIleHisAlaAsnMetCysArgLeuAlaPheHisGlyValLeuLeuHisGlyLeuG
513908 : GACATTCATGCCAACATGTGCCGACTGGCCTTCCATGGTGTCCTGCTCCATGGGCTGG : 513967
456 : luAspArgAsnTyrAlaAspSerPheLeuProArgLeuLysValTyrLysLeuLysHi : 474
|||||!:!:!!||||||!!:||||||||||||||||||||||||||||||||||||||
luAspLysAspTyrAlaGluSerPheLeuProArgLeuLysValTyrLysLeuLysHi
513968 : AGGACAAGGACTATGCTGAGAGCTTCTTGCCCAGGCTGAAAGTGTATAAGCTCAAGCA : 514024
475 : sLysHisGlyLeuValGluArg >>>> Target Intron 1 >>>> AlaMetA : 484
|||||||||||||||||||||| 16667 bp !.!||||
sLysHisGlyLeuValGluArg++ ++ValMetA
514025 : CAAACATGGCCTTGTAGAACGGgt.........................agGTGATGG : 530721
485 : spAspTyrSerValIleGlyArgSerLeuPheLysLysGluThrAsnIleGlnLeuPh : 503
|||||:!!||||||||||||||||||||||||||||||||||||||||||||||||||
spAspHisSerValIleGlyArgSerLeuPheLysLysGluThrAsnIleGlnLeuPh
530722 : ATGACCACAGCGTGATCGGCCGCTCCCTGTTCAAAAAGGAGACCAACATCCAGCTCTT : 530778
504 : eValGlyLeuLysValHisLeuSerThrGlyGluLeuGlyIleIleAspSerAlaPhe : 522
||||||||||||||||:!!|||||||||||||||||||||:!!|||||||||||||||
eValGlyLeuLysValTyrLeuSerThrGlyGluLeuGlyValIleAspSerAlaPhe
530779 : TGTGGGCCTCAAGGTGTACCTATCCACCGGGGAGCTGGGGGTCATCGACAGCGCCTTC : 530835
523 : GlyGlnSerGlyLysPheLysIleHisIlePro{G} >>>> Target Intron 2 : 534
|||||||||||||||||||||||||||||||||{|} 45462 bp
GlyGlnSerGlyLysPheLysIleHisIlePro{G}++
530836 : GGCCAGAGTGGCAAGTTCAAGATCCACATCCCT{G}gt.................... : 530874
535 : >>>> {ly}GlyLeuSerProGluSerLysLysIleLeuThrProAlaLeuLysLy : 550
{||}||||||||||||||||||||||||||||||||||||.!!||||||||
++{ly}GlyLeuSerProGluSerLysLysIleLeuThrProThrLeuLysLy
530875 : .....ag{GC}GGCCTCAGCCCCGAGTCCAAGAAGATTCTAACACCCACCCTCAAGAA : 576381
551 : sArgAlaArgAlaGlyArgGlyGluAlaThrArgGlnGluGluSerAlaGluArgSer : 569
||||!.!|||||||||||||||||||||.!!!:!||||||||| !||||||||||||
sArgGlyArgAlaGlyArgGlyGluAlaAlaLysGlnGluGluValAlaGluArgSer
576382 : GCGGGGCCGGGCCGGCCGAGGAGAAGCAGCCAAGCAGGAGGAGGTGGCCGAGCGGTCT : 576438
570 : GluProSerGlnHisValValLeuSerLeuThrPheLysArgTyrValPheAspThrH : 589
||||||:!!|||||||||!.!|||||||||:!!|||||||||||||||||||||||||
GluProAlaGlnHisValAlaLeuSerLeuSerPheLysArgTyrValPheAspThrH
576439 : GAGCCTGCGCAGCACGTGGCCCTCAGCCTGTCTTTCAAGCGTTACGTCTTTGACACCC : 576498
590 : isLysArgMetValGlnSerPro : 596
|||||||||||||||||||||||
isLysArgMetValGlnSerPro
576499 : ACAAGCGCATGGTCCAGTCTCCC : 576521
vulgar: SPP00000144_2.0 261 596 . gi|472269049|gb|KB715608.1| 513387 576521 + 1589 M 220 660 5 0 2 I 0 16663 3 0 2 M 52 156 S 0 1 5 0 2 I 0 45458 3 0 2 S 1 2 M 62 186
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local gene 513388 576521 1589 + . gene_id 1 ; sequence SPP00000144_2.0 ; gene_orientation +
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local cds 513388 514047 . + .
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local exon 513388 514047 . + . insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice5 514048 514049 . + . intron_id 1 ; splice_site "GT"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local intron 514048 530714 . + . intron_id 1
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice3 530713 530714 . + . intron_id 0 ; splice_site "AG"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local cds 530715 530871 . + .
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local exon 530715 530871 . + . insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice5 530872 530873 . + . intron_id 2 ; splice_site "GT"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local intron 530872 576333 . + . intron_id 2
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice3 576332 576333 . + . intron_id 1 ; splice_site "AG"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local cds 576334 576521 . + .
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local exon 576334 576521 . + . insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local similarity 513388 576521 1589 + . alignment_id 1 ; Query SPP00000144_2.0 ; Align 513388 262 660 ; Align 530715 482 156 ; Align 576336 535 186
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000144_2.0 # Protein # Eukaryotic elongation factor (eEFSec) # Human (Homo sapiens)
Target: gi|472269049|gb|KB715608.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00902, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 484
Query range: 72 -> 197
Target range: 328565 -> 587204
73 : AlaAlaProGluAlaGluProGluProGlyGluProLeuLeuGlnValThrLeuValA : 92
|||||| !!! !||||||||||||||||||||||||! !|||||||||||||||||||
AlaAlaSerGlyAlaGluProGluProGlyGluProGlnLeuGlnValThrLeuValA
328566 : GCGGCGTCCGGAGCCGAGCCCGAGCCCGGCGAGCCGCAGCTTCAGGTCACGCTGGTCG : 328623
93 : spCysProGlyHisAlaSerLeuIleArgThrIleIleGly{G} >>>> Target : 106
|||||||||||||||||||||||||||||||||||||||||{|} 849
spCysProGlyHisAlaSerLeuIleArgThrIleIleGly{G}++
328624 : ACTGCCCCGGGCACGCCTCCCTCATCCGGACCATCATTGGC{G}gt............ : 328668
107 : Intron 1 >>>> {ly}AlaGlnIleIleAspLeuMetMetLeuValIleAspVal : 119
26 bp {||}|||||||||||||||||||||||||||||||||||||||
++{ly}AlaGlnIleIleAspLeuMetMetLeuValIleAspVal
328669 : .............ag{GG}GCCCAGATCATTGATCTGATGATGCTGGTCATTGATGTG : 413630
120 : ThrLysGlyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIleAlaCysG : 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ThrLysGlyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIleAlaCysG
413631 : ACCAAAGGGATGCAGACCCAGTCAGCGGAGTGCCTTGTGATTGGGCAGATCGCCTGCC : 413690
140 : lnLysLeuValValValLeuAsnLysIleAspLeuLeuProGluGlyLysArgGlnAl : 158
|||||||||||||||||||||||||||||||||||||| !!|||||||||||||||||
lnLysLeuValValValLeuAsnLysIleAspLeuLeuAlaGluGlyLysArgGlnAl
413691 : AGAAGCTGGTTGTGGTGCTGAACAAAATAGACCTCTTAGCTGAAGGGAAGAGACAGGC : 413747
159 : aAlaIleAspLysMetThrLysLysMetGlnLysThrLeuGluAsnThr{Ly} >>> : 175
|||||||||||||||||||||||||||||||!:!|||||||||||||||{||}
aAlaIleAspLysMetThrLysLysMetGlnArgThrLeuGluAsnThr{Ly}++
413748 : AGCGATTGATAAAATGACCAAGAAAATGCAGAGGACCCTGGAGAACACC{AA}gt... : 413802
176 : > Target Intron 2 >>>> {s}PheArgGlyAlaProIleIleProValAlaA : 186
173338 bp {|}!:!! !!.! ! ! ! ! !:!!:!!|
+-{s}TyrLeuAlaTyrLeuProProLeuLeuSerA
413803 : ......................aa{A}TATCTTGCTTATTTACCTCCCTTGTTGTCAG : 587169
187 : laLysProGlyGlyProGluAlaProGluThrGlu : 197
||...||| !||| !! !|||||||||||||||
laSerProThrGlyThr***AlaProGluThrGlu
587170 : CGTCCCCCACGGGAACATGAGCTCCAGAGACAGAA : 587204
vulgar: SPP00000144_2.0 72 197 . gi|472269049|gb|KB715608.1| 328565 587204 + 484 M 33 99 S 0 1 5 0 2 I 0 84922 3 0 2 S 1 2 M 68 204 S 0 2 5 0 2 I 0 173334 3 0 2 S 1 1 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local gene 328566 587204 484 + . gene_id 2 ; sequence SPP00000144_2.0 ; gene_orientation +
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local cds 328566 328665 . + .
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local exon 328566 328665 . + . insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice5 328666 328667 . + . intron_id 1 ; splice_site "GT"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local intron 328666 413591 . + . intron_id 1
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice3 413590 413591 . + . intron_id 0 ; splice_site "AG"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local cds 413592 413799 . + .
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local exon 413592 413799 . + . insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice5 413800 413801 . + . intron_id 2 ; splice_site "GT"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local intron 413800 587137 . + . intron_id 2
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local splice3 587136 587137 . + . intron_id 1 ; splice_site "AA"
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local cds 587138 587204 . + .
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local exon 587138 587204 . + . insertions 0 ; deletions 0
gi|472269049|gb|KB715608.1| exonerate:protein2genome:local similarity 328566 587204 484 + . alignment_id 2 ; Query SPP00000144_2.0 ; Align 328566 73 99 ; Align 413594 107 204 ; Align 587139 176 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis