Command line: [exonerate -m p2g --showtargetgff -q ./TR3.fa -t TR3.carpeta/genomic.fa]
Hostname: [ws116037]
C4 Alignment:
------------
Query: SPP00000141_2.0 # Protein # Thioredoxin reductase 3 (TR3) # Human (Homo sapiens)
Target: gi|472267228|gb|KB717429.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02723, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 2883
Query range: 62 -> 698
Target range: 87309 -> 147048
63 : SerProGlyProGlyLysAlaGlyAspAlaProAsnArgArgSerGlyHisValArgG : 82
||||||||||||! !|||!.!|||! !.!|||||||||||| !||| !|||||||
SerProGlyProValLysValGlyAlaValProAsnArgArgLeuGlySerValArgG
87310 : TCTCCGGGGCCGGTGAAGGTGGGCGCGGTCCCCAACCGCCGCCTGGGCAGTGTCCGCG : 87367
83 : lyAlaArgValLeuSerProProGlyArgArgAlaArgLeuSerSerProGlyProSe : 101
||!.!! !:!!! !||||||||||||||||||||||||||||||||||||||| !!.!
lyValProMetSerSerProProGlyArgArgAlaArgLeuSerSerProGlyThrGl
87368 : GCGTGCCCATGTCTTCACCGCCAGGGCGCCGGGCCCGCCTGTCGTCCCCCGGCACCGG : 87424
102 : rArg<->SerSerGluAlaArgGluGluLeuArgArgHisLeuValGlyLeuIleGlu : 119
!||| ||||||||||||||||||||||||||||||!.!|||:!!||||||||||||
yArgSerSerSerGluAlaArgGluGluLeuArgArgArgLeuLeuGlyLeuIleGlu
87425 : CCGCTCGTCCTCCGAGGCCCGCGAGGAGCTGCGGCGCCGCCTCCTGGGCCTCATCGAG : 87481
120 : ArgSerArgValValIlePheSerLysSerTyrCysProHisSerThrArg >>>> : 137
!!!!:!||||||:!!||||||||||||||||||||||||||||||.!!|||
SerAsnArgValMetIlePheSerLysSerTyrCysProHisSerAlaArg++
87482 : AGCAACCGAGTGATGATCTTCAGCAAGAGTTACTGCCCGCACAGCGCGCGGgt..... : 87537
138 : Target Intron 1 >>>> ValLysGluLeuPheSerSerLeuGlyValGluCys : 148
12363 bp ||||||||||||||||||||||||||||||||||||
++ValLysGluLeuPheSerSerLeuGlyValGluCys
87538 : ....................agGTTAAAGAACTGTTTTCTTCTTTGGGAGTTGAATGT : 99931
149 : AsnValLeuGluLeuAspGlnVal{A} >>>> Target Intron 2 >>>> {s : 157
|||:!!||||||||||||!:!|||{|} 1055 bp {|
AsnIleLeuGluLeuAspArgVal{A}++ ++{s
99932 : AATATCTTGGAACTTGATCGAGTT{G}gt.........................ag{A : 101014
158 : p}AspGlyAlaArgValGlnGluValLeuSerGluIleThrAsnGlnLysThrValPr : 176
|}|||||||||!.!||||||||||||||||||||||||||||||||||||||||||||
p}AspGlyAlaAsnValGlnGluValLeuSerGluIleThrAsnGlnLysThrValPr
101015 : T}GATGGGGCCAATGTCCAAGAAGTGTTGTCAGAGATCACTAATCAGAAAACCGTGCC : 101070
177 : oAsnIlePheValAsnLysValHisValGlyGlyCysAspGlnThrPheGln >>>> : 194
|||||||||||||||||||||||||:!!||||||||||||||||||||||||
oAsnIlePheValAsnLysValHisMetGlyGlyCysAspGlnThrPheGln++
101071 : CAATATTTTTGTGAATAAAGTGCATATGGGTGGATGCGATCAAACTTTCCAGgt.... : 101126
195 : Target Intron 3 >>>> AlaTyrGlnSerGlyLeuLeuGlnLysLeuLeuGl : 205
1595 bp |||:!!|||||||||||||||||||||||||||||
++AlaHisGlnSerGlyLeuLeuGlnLysLeuLeuGl
101127 : .....................agGCTCATCAGAGTGGCTTATTACAGAAGCTCCTTCA : 102752
206 : nGluAspLeuAlaTyrAspTyrAspLeuIleIleIleGlyGlyGlySerGlyGlyLeu : 224
||||||| !|||||||||||||||||||||:!!||||||||||||||||||||||||
nGluAspAlaAlaTyrAspTyrAspLeuIleValIleGlyGlyGlySerGlyGlyLeu
102753 : GGAAGATGCAGCATACGATTATGACCTCATTGTCATTGGGGGAGGTTCTGGTGGCCTT : 102809
225 : SerCysAlaLys >>>> Target Intron 4 >>>> GluAlaAlaIleLeuGl : 234
:!!||||||:!! 224 bp |||||||||||||||||
AlaCysAlaGln++ ++GluAlaAlaIleLeuGl
102810 : GCATGTGCACAGgt.........................agGAAGCTGCCATCTTGGG : 103063
235 : yLysLysValMetValLeuAspPheValValProSerProGlnGlyThrSerTrp{G} : 253
||||||||||||||||||||||||||||||||||||||||||||||! !||||||{|}
yLysLysValMetValLeuAspPheValValProSerProGlnGlyMetSerTrp{G}
103064 : AAAGAAAGTTATGGTGCTAGACTTTGTGGTCCCATCACCTCAGGGGATGTCCTGG{G} : 103120
254 : >>>> Target Intron 5 >>>> {ly}LeuGlyGlyThrCysValAsnValG : 262
1669 bp {||}|||||||||||||||||||||||||
++ ++{ly}LeuGlyGlyThrCysValAsnValG
103121 : gt.........................ag{GT}CTTGGCGGTACTTGTGTAAATGTGG : 104816
263 : lyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuCysAs : 281
|||||:!!||||||||||||||||||||||||||||||||||||||||||||| !!||
lyCysValProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuSerAs
104817 : GCTGTGTTCCTAAGAAATTGATGCATCAAGCTGCCCTTTTGGGGCAGGCGTTAAGTGA : 104873
282 : pSerArgLysPheGlyTrpGluTyrAsnGlnGln{V} >>>> Target Intron : 293
|:!!|||||||||||||||||||||!:!||||||{|} 6518 bp
pAlaArgLysPheGlyTrpGluTyrSerGlnGln{V}++
104874 : CGCCAGGAAGTTTGGCTGGGAGTACAGTCAACAA{G}gt................... : 104912
294 : 6 >>>> {al}ArgHisAsnTrpGluThrMetThrLysAlaIleGlnAsnHisIleS : 309
{||}||||||||||||||||||||||||:!!||||||||||||:!!|||.
++{al}ArgHisAsnTrpGluThrMetThrGluAlaIleGlnAsnTyrIleG
104913 : ......ag{TG}AGGCATAACTGGGAGACTATGACAGAAGCGATTCAAAATTACATCG : 111475
310 : erSerLeuAsnTrpGlyTyrArgLeuSerLeuArgGluLysAlaValAlaTyrValAs : 328
!!|||||||||||||||! !||||||||||||||||||||||||||||||||||||||
lySerLeuAsnTrpGlyCysArgLeuSerLeuArgGluLysAlaValAlaTyrValAs
111476 : GCTCTCTAAACTGGGGCTGCAGGTTGTCCTTGAGGGAGAAGGCCGTGGCCTATGTCAA : 111532
329 : nSerTyrGlyGluPheValGluHisHisLysIleLys >>>> Target Intron : 341
||||||||||||||||||||||||||||||||||||| 1708 bp
nSerTyrGlyGluPheValGluHisHisLysIleLys++
111533 : TTCCTATGGAGAATTTGTTGAACATCATAAAATAAAGgt................... : 111573
342 : 7 >>>> AlaThrAsnLysLysGlyGlnGluThrTyrTyrThrAlaAlaGlnPheVa : 357
|||||||||!:!||||||||||||||||||||||||||||||:!!|||||
++AlaThrAsnArgLysGlyGlnGluThrTyrTyrThrAlaAlaLysPheVa
111574 : ......agGCAACCAATAGAAAAGGACAGGAAACTTACTATACTGCTGCAAAATTTGT : 113327
358 : lIleAlaThrGlyGluArgProArgTyrLeuGlyIleGlnGlyAspLysGluTyrCys : 376
|:!!||||||||||||||||||||||||||||||||||||||||||||||||||||||
lLeuAlaThrGlyGluArgProArgTyrLeuGlyIleGlnGlyAspLysGluTyrCys
113328 : CCTAGCGACAGGCGAAAGGCCCCGCTATTTAGGAATCCAAGGAGATAAAGAGTACTGT : 113384
377 : IleThr{Se} >>>> Target Intron 8 >>>> {r}AspAspLeuPheSerL : 385
||||||{||} 1130 bp {|}||||||||||||||||
IleThr{Se}++ ++{r}AspAspLeuPheSerL
113385 : ATTACT{AG}gt.........................ag{T}GATGACCTGTTTTCTC : 114541
386 : euProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeuGluCy : 404
|||||||||||||||||||||||||||||||||||||||||||||||!.!||||||||
euProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrValGlyLeuGluCy
114542 : TGCCTTATTGCCCTGGCAAAACATTAGTGGTGGGTGCATCTTATGTCGGTCTGGAATG : 114598
405 : sAlaGlyPheLeuAlaGlyPheGlyLeuAspValThrValMetValArgSerIleLeu : 423
|||||||||||||||||||.!!||||||||||||||||||||||||||||||:!!|||
sAlaGlyPheLeuAlaGlyIleGlyLeuAspValThrValMetValArgSerValLeu
114599 : CGCAGGGTTTCTTGCTGGCATTGGCTTAGATGTCACAGTTATGGTGCGCTCAGTCCTT : 114655
424 : LeuArgGlyPheAspGlnGluMetAlaGluLysValGlySerTyrMetGluGlnHisG : 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LeuArgGlyPheAspGlnGluMetAlaGluLysValGlySerTyrMetGluGlnHisG
114656 : CTTCGTGGCTTTGATCAAGAAATGGCAGAGAAAGTGGGTTCCTACATGGAGCAACATG : 114715
444 : lyValLysPheLeuArgLysPheIleProValMet >>>> Target Intron 9 : 455
|||||||||||||||||||||||:!!||||||||| 1204 bp
lyValLysPheLeuArgLysPheValProValMet++
114716 : GTGTTAAGTTCTTAAGAAAATTTGTACCTGTGATGgt..................... : 114753
456 : >>>> ValGlnGlnLeuGluLysGlySerProGlyLysLeuLysValLeuAlaLysS : 472
||||||||||||||||||||||||||||||||||||||||||:!!|||||||
++ValGlnGlnLeuGluLysGlySerProGlyLysLeuLysValValAlaLysS
114754 : ....agGTTCAGCAGTTGGAGAAAGGTTCACCCGGAAAGCTGAAAGTAGTGGCTAAAT : 116006
473 : erThrGluGlyThrGluThrIleGluGlyValTyrAsnThr >>>> Target Int : 486
||||||||||| !!|||.!!||||||! !|||||||||||| 9199
erThrGluGlyProGluAlaIleGluGluValTyrAsnThr++
116007 : CCACTGAAGGACCAGAAGCTATTGAAGAAGTATATAATACAgt............... : 116050
487 : ron 10 >>>> ValLeuLeuAlaIleGlyArgAspSerCysThrArgLysIleGly : 500
bp |||||||||||||||||||||||||||||||||||||||||||||
++ValLeuLeuAlaIleGlyArgAspSerCysThrArgLysIleGly
116051 : ...........agGTTTTGTTAGCAATTGGTCGTGACTCCTGCACAAGGAAAATAGGT : 125289
501 : LeuGluLysIleGlyValLysIleAsnGlu{Ly} >>>> Target Intron 11 : 511
||||||||||||||||||||||||||||||{||} 594 bp
LeuGluLysIleGlyValLysIleAsnGlu{Ly}++
125290 : TTGGAGAAGATTGGTGTCAAAATCAATGAG{AA}gt...................... : 125326
512 : >>>> {s}SerGlyLysIleProValAsnAspValGluGlnThrAsnValProTyrV : 528
{|}|||||||||||||||||||||||||||||||||||||||||||||||||
++{s}SerGlyLysIleProValAsnAspValGluGlnThrAsnValProTyrV
125327 : ....ag{G}AGTGGCAAAATACCAGTAAATGATGTGGAACAGACCAATGTGCCCTATG : 125967
529 : alTyrAlaValGlyAspIleLeuGluAspLysProGluLeuThrProValAlaIleGl : 547
||||||||||||||||||||||||||! !|||! !|||||||||||||||||||||||
alTyrAlaValGlyAspIleLeuGluGlyLysLeuGluLeuThrProValAlaIleGl
125968 : TTTATGCTGTCGGGGATATTCTGGAGGGTAAACTTGAGCTCACACCCGTTGCCATACA : 126024
548 : nSerGlyLysLeuLeuAlaGlnArgLeuPheGlyAlaSerLeuGluLys >>>> Ta : 564
|:!!|||||||||||||||!::|||||||||!.!!.! !|||||||||
nAlaGlyLysLeuLeuAlaArgArgLeuPheAlaGlyHisLeuGluLys++
126025 : GGCAGGCAAGCTGCTGGCTCGCAGACTTTTTGCTGGCCATTTGGAAAAGgt....... : 126077
565 : rget Intron 12 >>>> CysAspTyrIleAsnValProThrThrValPheThrP : 576
3822 bp |||||||||:!!|||||||||||||||||||||.!!|
++CysAspTyrValAsnValProThrThrValPheAlaP
126078 : ...................agTGTGATTATGTTAATGTTCCAACTACGGTGTTTGCTC : 129933
577 : roLeuGluTyrGlyCysCysGlyLeuSerGluGluLysAlaIleGluValTyrLysLy : 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
roLeuGluTyrGlyCysCysGlyLeuSerGluGluLysAlaIleGluValTyrLysLy
129934 : CTTTGGAATATGGCTGCTGTGGATTGTCTGAAGAGAAAGCTATTGAAGTGTATAAAAA : 129990
596 : sGluAsnLeuGlu >>>> Target Intron 13 >>>> IleTyrHisThrLeu : 604
||||||||||||| 14208 bp :!:||||||||||||
sGluAsnLeuGlu++ ++ValTyrHisThrLeu
129991 : AGAGAATCTCGAGgt..........................agGTGTACCATACTTTG : 144225
605 : PheTrpProLeuGluTrpThrValAlaGlyArgGluAsnAsnThrCysTyrAlaLysI : 624
|||||||||||||||||||||||||||||||||!!:||||||||||||||||||||||
PheTrpProLeuGluTrpThrValAlaGlyArgAspAsnAsnThrCysTyrAlaLysI
144226 : TTCTGGCCTCTTGAATGGACAGTGGCCGGCAGAGACAACAATACTTGTTATGCAAAGA : 144285
625 : leIleCysAsnLysPheAspHis >>>> Target Intron 14 >>>> AspAr : 633
||||||||:!!||||||:!!:!! 2326 bp !!||
leIleCysHisLysPheAsnAsn++ ++TyrAr
144286 : TAATTTGCCATAAATTCAACAATgt..........................agTATCG : 146638
634 : gValIleGlyPheHisIleLeuGlyProAsnAlaGlyGluValThrGlnGlyPheAla : 652
||||||||||||||||:!!|||||||||||||||||||||:!!|||||||||||||||
gValIleGlyPheHisValLeuGlyProAsnAlaGlyGluIleThrGlnGlyPheAla
146639 : GGTGATAGGATTCCATGTTCTTGGACCGAATGCCGGTGAGATCACCCAAGGGTTTGCG : 146695
653 : AlaAlaMetLysCysGlyLeuThrLysGlnLeuLeuAspAspThrIleGlyIleHisP : 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AlaAlaMetLysCysGlyLeuThrLysGlnLeuLeuAspAspThrIleGlyIleHisP
146696 : GCAGCAATGAAATGTGGGCTCACAAAACAGCTACTTGATGACACCATTGGAATTCATC : 146755
673 : roThrCysGlyGlu >>>> Target Intron 15 >>>> ValPheThrThrLe : 681
|||||||||||||| 213 bp ||||||||||||||
roThrCysGlyGlu++ ++ValPheThrThrLe
146756 : CCACATGTGGTGAGgt..........................agGTGTTTACAACTTT : 146995
682 : uGluIleThrLysSerSerGlyLeuAspIleThrGlnLysGlyCysUnkGly : 698
|||||||||||||||||||||||||||||||||||||||||||||| |||
uGluIleThrLysSerSerGlyLeuAspIleThrGlnLysGlyCys***Gly
146996 : GGAAATCACAAAGTCGTCAGGACTAGACATCACGCAGAAAGGCTGCTGAGGC : 147048
vulgar: SPP00000141_2.0 62 698 . gi|472267228|gb|KB717429.1| 87309 147048 + 2883 M 40 120 G 0 3 M 34 102 5 0 2 I 0 12359 3 0 2 M 20 60 S 0 1 5 0 2 I 0 1051 3 0 2 S 1 2 M 36 108 5 0 2 I 0 1591 3 0 2 M 35 105 5 0 2 I 0 220 3 0 2 M 24 72 S 0 1 5 0 2 I 0 1665 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 6514 3 0 2 S 1 2 M 47 141 5 0 2 I 0 1704 3 0 2 M 38 114 S 0 2 5 0 2 I 0 1126 3 0 2 S 1 1 M 75 225 5 0 2 I 0 1200 3 0 2 M 31 93 5 0 2 I 0 9195 3 0 2 M 25 75 S 0 2 5 0 2 I 0 590 3 0 2 S 1 1 M 52 156 5 0 2 I 0 3818 3 0 2 M 36 108 5 0 2 I 0 14204 3 0 2 M 32 96 5 0 2 I 0 2322 3 0 2 M 45 135 5 0 2 I 0 209 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local gene 87310 147048 2883 + . gene_id 1 ; sequence SPP00000141_2.0 ; gene_orientation +
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 87310 87534 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 87310 87534 . + . insertions 3 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 87535 87536 . + . intron_id 1 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 87535 99897 . + . intron_id 1
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 99896 99897 . + . intron_id 0 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 99898 99958 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 99898 99958 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 99959 99960 . + . intron_id 2 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 99959 101013 . + . intron_id 2
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 101012 101013 . + . intron_id 1 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 101014 101123 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 101014 101123 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 101124 101125 . + . intron_id 3 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 101124 102718 . + . intron_id 3
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 102717 102718 . + . intron_id 2 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 102719 102823 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 102719 102823 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 102824 102825 . + . intron_id 4 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 102824 103047 . + . intron_id 4
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 103046 103047 . + . intron_id 3 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 103048 103120 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 103048 103120 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 103121 103122 . + . intron_id 5 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 103121 104789 . + . intron_id 5
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 104788 104789 . + . intron_id 4 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 104790 104909 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 104790 104909 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 104910 104911 . + . intron_id 6 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 104910 111427 . + . intron_id 6
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 111426 111427 . + . intron_id 5 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 111428 111570 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 111428 111570 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 111571 111572 . + . intron_id 7 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 111571 113278 . + . intron_id 7
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 113277 113278 . + . intron_id 6 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 113279 113394 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 113279 113394 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 113395 113396 . + . intron_id 8 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 113395 114524 . + . intron_id 8
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 114523 114524 . + . intron_id 7 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 114525 114750 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 114525 114750 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 114751 114752 . + . intron_id 9 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 114751 115954 . + . intron_id 9
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 115953 115954 . + . intron_id 8 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 115955 116047 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 115955 116047 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 116048 116049 . + . intron_id 10 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 116048 125246 . + . intron_id 10
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 125245 125246 . + . intron_id 9 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 125247 125323 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 125247 125323 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 125324 125325 . + . intron_id 11 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 125324 125917 . + . intron_id 11
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 125916 125917 . + . intron_id 10 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 125918 126074 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 125918 126074 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 126075 126076 . + . intron_id 12 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 126075 129896 . + . intron_id 12
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 129895 129896 . + . intron_id 11 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 129897 130004 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 129897 130004 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 130005 130006 . + . intron_id 13 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 130005 144212 . + . intron_id 13
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 144211 144212 . + . intron_id 12 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 144213 144308 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 144213 144308 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 144309 144310 . + . intron_id 14 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 144309 146634 . + . intron_id 14
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 146633 146634 . + . intron_id 13 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 146635 146769 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 146635 146769 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice5 146770 146771 . + . intron_id 15 ; splice_site "GT"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local intron 146770 146982 . + . intron_id 15
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local splice3 146981 146982 . + . intron_id 14 ; splice_site "AG"
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local cds 146983 147048 . + .
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local exon 146983 147048 . + . insertions 0 ; deletions 0
gi|472267228|gb|KB717429.1| exonerate:protein2genome:local similarity 87310 147048 2883 + . alignment_id 1 ; Query SPP00000141_2.0 ; Align 87310 63 120 ; Align 87433 103 102 ; Align 99898 137 60 ; Align 101016 158 108 ; Align 102719 194 105 ; Align 103048 229 72 ; Align 104792 254 117 ; Align 111430 294 141 ; Align 113279 341 114 ; Align 114526 380 225 ; Align 115955 455 93 ; Align 125247 486 75 ; Align 125919 512 156 ; Align 129897 564 108 ; Align 144213 600 96 ; Align 146635 632 135 ; Align 146983 677 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis