TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000141_2.0 # Protein # Thioredoxin reductase 3 (TR3) #
Human (Homo sapiens)
(698 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472267228|gb|KB717429.1| Leptonychotes weddellii isolate WS11... 152 1e-34
gi|472269750|gb|KB714939.1| Leptonychotes weddellii isolate WS11... 76 4e-33
gi|472268805|gb|KB715852.1| Leptonychotes weddellii isolate WS11... 138 2e-30
gi|472266971|gb|KB717686.1| Leptonychotes weddellii isolate WS11... 78 2e-12
gi|472267774|gb|KB716883.1| Leptonychotes weddellii isolate WS11... 50 7e-04
gi|472269887|gb|KB714802.1| Leptonychotes weddellii isolate WS11... 48 0.002
gi|472267847|gb|KB716810.1| Leptonychotes weddellii isolate WS11... 39 1.7
gi|472269547|gb|KB715142.1| Leptonychotes weddellii isolate WS11... 39 1.7
gi|472269680|gb|KB715009.1| Leptonychotes weddellii isolate WS11... 39 1.7
gi|472269735|gb|KB714954.1| Leptonychotes weddellii isolate WS11... 38 2.8
gi|472269483|gb|KB715206.1| Leptonychotes weddellii isolate WS11... 37 3.7
gi|472264699|gb|KB719958.1| Leptonychotes weddellii isolate WS11... 37 6.3
gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11... 37 6.3
>gi|472267228|gb|KB717429.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02723, whole genome
shotgun sequence
Length = 332153
Score = 152 bits (383), Expect = 1e-34
Identities = 73/77 (94%), Positives = 75/77 (97%)
Frame = +1
Query: 379 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSY 438
SDDLFSLPYCPGKTLVVGASYV LECAGFLAG GLDVTVMVRS+LLRGFDQEMAEKVGSY
Sbjct: 114523 SDDLFSLPYCPGKTLVVGASYVGLECAGFLAGIGLDVTVMVRSVLLRGFDQEMAEKVGSY 114702
Query: 439 MEQHGVKFLRKFIPVMV 455
MEQHGVKFLRKF+PVMV
Sbjct: 114703 MEQHGVKFLRKFVPVMV 114753
Score = 96.3 bits (238), Expect = 7e-18
Identities = 45/52 (86%), Positives = 47/52 (90%)
Frame = +1
Query: 289 YNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIK 340
Y VRHNWETMT+AIQN+I SLNWG RLSLREKAVAYVNSYGEFVEHHKIK
Sbjct: 111415 YLFSVRHNWETMTEAIQNYIGSLNWGCRLSLREKAVAYVNSYGEFVEHHKIK 111570
Score = 96.3 bits (238), Expect = 7e-18
Identities = 43/45 (95%), Positives = 45/45 (100%)
Frame = +1
Query: 633 RVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 677
RVIGFH+LGPNAGE+TQGFAAAMKCGLTKQLLDDTIGIHPTCGEV
Sbjct: 146638 RVIGFHVLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 146772
Score = 95.5 bits (236), Expect = 1e-17
Identities = 55/107 (51%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Frame = +1
Query: 39 AFRFVSRPGRARSESETLERSPPQ-------SPGPGKAGDAPNRRSGHVRGARVLSPPGR 91
A R ++ PG+A S++ L + PP SPGP K G PNRR G VRG + SPPGR
Sbjct: 87217 ASRSLNCPGQAGSDTAALAQPPPPPPPRAQTSPGPVKVGAVPNRRLGSVRGVPMSSPPGR 87396
Query: 92 RARLSSPGP-XXXXXXXXXXXXHLVGLIERSRVVIFSKSYCPHSTRV 137
RARLSSPG L+GLIE +RV+IFSKSYCPHS RV
Sbjct: 87397 RARLSSPGTGRSSSEAREELRRRLLGLIESNRVMIFSKSYCPHSARV 87537
Score = 92.4 bits (228), Expect = 1e-16
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +3
Query: 509 NEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKCDYI 567
+ +SGKIPVNDVEQTNVPYVYAVGDILE K ELTPVAIQ+GKLLA+RLF LEK ++
Sbjct: 125910 SNRSGKIPVNDVEQTNVPYVYAVGDILEGKLELTPVAIQAGKLLARRLFAGHLEKVSFL 126086
Score = 83.2 bits (204), Expect = 6e-14
Identities = 36/40 (90%), Positives = 39/40 (97%)
Frame = +2
Query: 253 GLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQ 292
GLGGTCVNVGC+PKKLMHQAALLGQAL D+RKFGWEY+QQ
Sbjct: 104789 GLGGTCVNVGCVPKKLMHQAALLGQALSDARKFGWEYSQQ 104908
Score = 81.6 bits (200), Expect = 2e-13
Identities = 41/54 (75%), Positives = 45/54 (83%), Gaps = 5/54 (9%)
Frame = +2
Query: 333 FVEHHKI-----KATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDD 381
FVE +I KATN+KGQETYYTAA+FV+ATGERPRYLGIQGDKEYCIT D
Sbjct: 113240 FVEEVEIYFSLFKATNRKGQETYYTAAKFVLATGERPRYLGIQGDKEYCITR*D 113401
Score = 80.1 bits (196), Expect = 5e-13
Identities = 34/38 (89%), Positives = 37/38 (97%)
Frame = +3
Query: 563 KCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEI 600
+CDY+NVPTTVF PLEYGCCGLSEEKAIEVYKKENLE+
Sbjct: 129894 QCDYVNVPTTVFAPLEYGCCGLSEEKAIEVYKKENLEV 130007
Score = 76.3 bits (186), Expect = 7e-12
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +3
Query: 157 DDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQ 193
DDGA VQEVLSEITNQKTVPNIFVNKVH+GGCDQTFQ
Sbjct: 101013 DDGANVQEVLSEITNQKTVPNIFVNKVHMGGCDQTFQ 101123
Score = 73.2 bits (178), Expect = 6e-11
Identities = 29/36 (80%), Positives = 35/36 (97%)
Frame = +3
Query: 598 LEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDR 633
L++YHTLFWPLEWTVAGR+NNTCYAKIIC+KF++ R
Sbjct: 144207 LQVYHTLFWPLEWTVAGRDNNTCYAKIICHKFNNVR 144314
Score = 57.8 bits (138), Expect = 3e-06
Identities = 29/35 (82%), Positives = 30/35 (85%)
Frame = +2
Query: 452 PVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTV 486
P VQQLEKGSPGKLKV+AKSTEG E IE VYNTV
Sbjct: 115946 PY*VQQLEKGSPGKLKVVAKSTEGPEAIEEVYNTV 116050
Score = 53.9 bits (128), Expect = 4e-05
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +3
Query: 486 VLLAIGRDSCTRKIGLEKIGVKINEK 511
VLLAIGRDSCTRKIGLEKIGVKINEK
Sbjct: 125247 VLLAIGRDSCTRKIGLEKIGVKINEK 125324
Score = 52.0 bits (123), Expect = 1e-04
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +1
Query: 229 EAAILGKKVMVLDFVVPSPQGTSWG 253
EAAILGKKVMVLDFVVPSPQG SWG
Sbjct: 103048 EAAILGKKVMVLDFVVPSPQGMSWG 103122
Score = 45.1 bits (105), Expect = 0.018
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +1
Query: 676 EVFTTLEITKSSGLDITQKGCXG 698
+VFTTLEITKSSGLDITQKGC G
Sbjct: 146980 QVFTTLEITKSSGLDITQKGC*G 147048
Score = 40.8 bits (94), Expect = 0.34
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = +1
Query: 136 RVKELFSSLGVECNVLELDQV 156
+VKELFSSLGVECN+LELD+V
Sbjct: 99895 QVKELFSSLGVECNILELDRV 99957
Score = 40.8 bits (94), Expect = 0.34
Identities = 20/35 (57%), Positives = 22/35 (62%)
Frame = +2
Query: 194 AYQSGLLQKLLQEDLAYDYDXXXXXXXXXXXXCAK 228
A+QSGLLQKLLQED AYDYD CA+
Sbjct: 102719 AHQSGLLQKLLQEDAAYDYDLIVIGGGSGGLACAQ 102823
>gi|472269750|gb|KB714939.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00233, whole genome
shotgun sequence
Length = 2014995
Score = 75.9 bits (185), Expect(3) = 4e-33
Identities = 39/100 (39%), Positives = 60/100 (60%)
Frame = -1
Query: 577 LEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIG 636
L +G GL+E+++I Y KEN++ Y T F P+ + V ++ C K++C + ++V+G
Sbjct: 1204188 LLFGIVGLTEDESIYKY*KENVKTYSTTFTPI-YHVVTKKKTKCVMKMVCATAE-EKVVG 1204015
Query: 637 FHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE 676
H G E+ QGFA A+K G TK D+T+ IHPT E
Sbjct: 1204014 IHTQGIGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSE 1203895
Score = 60.8 bits (146), Expect(3) = 4e-33
Identities = 71/284 (25%), Positives = 124/284 (43%), Gaps = 17/284 (5%)
Frame = -3
Query: 227 AKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFG 286
A+ A LG + +++ S LG TCVNVGC+PKK+M + + + D +G
Sbjct: 1205224 ARRVAELGARAAMVE---------SHKLGSTCVNVGCVPKKVMWNTTVHSEFMHDHVDYG 1205072
Query: 287 WEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFV--EHHKIKATNK 344
++ + + + NW + + ++S LN Y+ +L + + + + F ++
Sbjct: 1205071 FQ-SCKSKFNWHIIKEKRDAYLSCLNTIYQNNLTKSHIEIIQGHASFTCDLEPTVEVNGN 1204895
Query: 345 KGQETYYTAAQFVIATG---ERPRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVA 401
K YTA+ +IATG P+ I G TSD L PG++++V + +
Sbjct: 1204894 K-----YTASYILIATGGLPSCPQESQIPG-ANLGKTSDGFSQLEELPGRSVIVVQATLL 1204733
Query: 402 LECAGFLA--------GFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPV 453
GF + LD +LR FD ++ +E G++ L+
Sbjct: 1204732 *R*LGFFLLWVQRHH**YRLDK-------VLRNFDSIISSNCTEELENSGIEVLKY---S 1204583
Query: 454 MVQQLEKGSPGKLKVLAKSTEGTE----TIEGVYNTVLLAIGRD 493
V++++K S G + G + TI V + +L AIGRD
Sbjct: 1204582 QVKEVKKTSSGLELCMIT*VPGRKPILTTIPDV-DCLLWAIGRD 1204454
Score = 51.6 bits (122), Expect(3) = 4e-33
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = -2
Query: 499 IGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFG 558
+ L K+G++ ++K G I V++ + T+V +YAVGD+ K LTP AI +G LA RL
Sbjct: 1204436 LNLNKVGIQTDDK-GHIIVDEFQNTSVKGIYAVGDMCR-KALLTPGAIAAG*KLAHRLLE 1204263
Query: 559 ASLE-KCDYINVPTTVFT 575
+ K DY N PT +F+
Sbjct: 1204262 CKEDSKLDYDNFPTVIFS 1204209
>gi|472268805|gb|KB715852.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01146, whole genome
shotgun sequence
Length = 801885
Score = 138 bits (347), Expect = 2e-30
Identities = 63/77 (81%), Positives = 72/77 (93%)
Frame = +3
Query: 379 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSY 438
SDDLFSLPYCPGKTLVVGASYVALECAGFL G GLDVTVMVRSILLRGFDQ+MA K+G +
Sbjct: 492126 SDDLFSLPYCPGKTLVVGASYVALECAGFLVGIGLDVTVMVRSILLRGFDQDMANKIGEH 492305
Query: 439 MEQHGVKFLRKFIPVMV 455
ME+HGVKF+++F+P+ V
Sbjct: 492306 MEEHGVKFIKQFVPIKV 492356
Score = 85.5 bits (210), Expect = 1e-14
Identities = 37/46 (80%), Positives = 42/46 (91%)
Frame = +1
Query: 632 DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 677
+RV+GFH+LGPNAGEVTQGFAAA+KCGLTK+ LD TIGIHP C EV
Sbjct: 513886 ERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 514023
Score = 79.3 bits (194), Expect = 9e-13
Identities = 36/50 (72%), Positives = 44/50 (88%)
Frame = +3
Query: 511 KSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGAS 560
++GKIPV D EQTNVPY+YA+GD+LE K ELTPVAIQ+G+LLAQRL+ S
Sbjct: 500436 RTGKIPVTDEEQTNVPYIYAIGDVLEGKLELTPVAIQAGRLLAQRLYAGS 500585
Score = 74.3 bits (181), Expect = 3e-11
Identities = 30/48 (62%), Positives = 40/48 (83%)
Frame = +2
Query: 293 VRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIK 340
V+H+W MT+A+QNHI SLNWGYR++LREK V Y N++G+FV H+IK
Sbjct: 490193 VKHDWNKMTEAVQNHIGSLNWGYRVALREKKVTYENAFGQFVGPHRIK 490336
Score = 72.0 bits (175), Expect = 1e-10
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = +1
Query: 253 GLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGW 287
GLGGTCVNVGCIPKKLMHQAALLGQAL DSR +GW
Sbjct: 482602 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGW 482706
Score = 70.9 bits (172), Expect = 3e-10
Identities = 29/46 (63%), Positives = 39/46 (84%)
Frame = +1
Query: 561 LEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFW 606
L++CDY NVPTTVFTPLEYG CGLSEEKA+E + +EN+E+ + + +
Sbjct: 507880 LKQCDYENVPTTVFTPLEYGACGLSEEKAVETFGEENIEVSYIILY 508017
Score = 59.7 bits (143), Expect = 7e-07
Identities = 26/38 (68%), Positives = 32/38 (84%)
Frame = +3
Query: 341 ATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCIT 378
ATN KG+E Y+A +F+IATGERPRYL I GD+EYCI+
Sbjct: 490698 ATNNKGKEKIYSAERFLIATGERPRYLDIPGDREYCIS 490811
Score = 55.5 bits (132), Expect = 1e-05
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3
Query: 599 EIYHTLFWPLEWTVAGRENNTCYAKIICNKFDH 631
++YH+ FWPLEWT+ R++N CYAK+ICN D+
Sbjct: 510225 QVYHSYFWPLEWTIPSRDSNKCYAKVICNIKDN 510323
Score = 50.1 bits (118), Expect = 6e-04
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +1
Query: 486 VLLAIGRDSCTRKIGLEKIGVKINEK 511
VLLAIGRD+CTRKIGLE +GVKINEK
Sbjct: 498361 VLLAIGRDACTRKIGLETVGVKINEK 498438
Score = 45.1 bits (105), Expect = 0.018
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +3
Query: 453 VMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTV 486
+ V+Q+E G+PG+L+V+AKST E IEG YNTV
Sbjct: 497709 LQVEQIEAGTPGRLRVIAKSTSCDEIIEGEYNTV 497810
Score = 40.4 bits (93), Expect = 0.44
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +1
Query: 228 KEAAILGKKVMVLDFVVPSPQGTSWG 253
+EAA KK+MVLDFV P+P GT WG
Sbjct: 480505 QEAARYDKKIMVLDFVTPTPHGTRWG 480582
>gi|472266971|gb|KB717686.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02980, whole genome
shotgun sequence
Length = 294865
Score = 77.8 bits (190), Expect = 2e-12
Identities = 35/54 (64%), Positives = 41/54 (75%)
Frame = -3
Query: 244 VPSPQGTSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQVRHNW 297
+P+ GT WGLGGTCVNVGCIPKKLMHQAALLG + D+ +GW Q V H+W
Sbjct: 99995 LPNMPGTRWGLGGTCVNVGCIPKKLMHQAALLGGMIRDATHYGWAI-QPVLHDW 99837
Score = 53.5 bits (127), Expect = 5e-05
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -2
Query: 400 VALECAGFLAGFGLDVTVMVRSILLRGFDQ 429
VALECAGFL G GLD TVM+RSI LRGFDQ
Sbjct: 83877 VALECAGFLTGLGLDTTVMIRSIPLRGFDQ 83788
Score = 51.6 bits (122), Expect = 2e-04
Identities = 27/53 (50%), Positives = 34/53 (64%)
Frame = -1
Query: 487 LLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKP 539
L GR TR + LEK GVKIN S KI V+ E T+VP++YA+GD+ E P
Sbjct: 71413 LFPSGRIPETRSLNLEKAGVKINPNSQKILVDAQETTSVPHIYAIGDVAEVWP 71255
Score = 49.7 bits (117), Expect = 7e-04
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = -1
Query: 569 VPTTVFTPLEYGCCGLSEEKAIEVYKKENLEI 600
VPTTVFTPLEYGC GLSEE+A+ + +E++E+
Sbjct: 67726 VPTTVFTPLEYGCVGLSEEEAVARHGEEHVEV 67631
Score = 46.6 bits (109), Expect = 0.006
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = -2
Query: 656 KCGLTKQLLDDTIGIHPTCGEVFTTLEITKSSGLDITQKGCXG 698
+CG + L T+GIHPTC E L I+K SGLD T GC G
Sbjct: 64011 RCGASYVQLMQTVGIHPTCAEEVAKLRISKRSGLDPTVTGC*G 63883
Score = 43.9 bits (102), Expect = 0.040
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -3
Query: 620 CYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMK 656
C +++C + V+G H LGPNAGEVTQGFA +K
Sbjct: 65873 CGFQMVCLRKPPQLVLGLHFLGPNAGEVTQGFALGIK 65763
Score = 41.6 bits (96), Expect = 0.20
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = -2
Query: 536 EDKPELTPVAIQSGKLLAQRLFGASLEKCDYINV 569
+ +PELTP A+ +GKLLA+RL G S + DY NV
Sbjct: 68109 QGRPELTPTAVMAGKLLARRLCGQSSDVMDYDNV 68008
Score = 40.0 bits (92), Expect = 0.57
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = -3
Query: 279 LCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREK 322
LC S +G + V N TM +A+QNH+ SLNWG+R+ L+++
Sbjct: 99347 LCGSCFWGGF*HVLVCVNRGTMAEAVQNHVKSLNWGHRVQLQDR 99216
>gi|472267774|gb|KB716883.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02177, whole genome
shotgun sequence
Length = 437307
Score = 49.7 bits (117), Expect = 7e-04
Identities = 23/48 (47%), Positives = 29/48 (60%)
Frame = -1
Query: 634 VIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 681
V+G H+ G E+ QGFA A+K G TK D+T+ IHPT E TL
Sbjct: 382068 VVGIHMQGIGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTL 381925
>gi|472269887|gb|KB714802.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00096, whole genome
shotgun sequence
Length = 2688311
Score = 48.1 bits (113), Expect = 0.002
Identities = 22/53 (41%), Positives = 36/53 (67%)
Frame = +3
Query: 123 VVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTV 175
VVIFSK+ C + K+LF + V+ V+ELD ++ G++ Q+ L ++T +KTV
Sbjct: 317649 VVIFSKTSCSYCAMAKKLFHDINVKYKVVELDMLEYGSQFQDALYKMTGEKTV 317807
>gi|472267847|gb|KB716810.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02104, whole genome
shotgun sequence
Length = 494795
Score = 38.5 bits (88), Expect = 1.7
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Frame = -2
Query: 435 VGSYMEQHGVKFLR----------KFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYN 484
VGS E G+ FL + +E S GK +V+ +
Sbjct: 159247 VGSTRETSGLPFLSLSAVSVDVCLTLTHCLSSSVEGASGGKAEVIT------------CD 159104
Query: 485 TVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVP 526
+L+ IGR T+ +GLE++G++++ + G+IPVN QT +P
Sbjct: 159103 VLLVCIGRRPFTQNLGLEELGIELDPR-GRIPVNTRFQTKIP 158981
>gi|472269547|gb|KB715142.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00436, whole genome
shotgun sequence
Length = 1333504
Score = 38.5 bits (88), Expect = 1.7
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = -3
Query: 118 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLE---LDQVDDGARVQEVLSEITNQKT 174
I+ +VV+F K CP+ R +EL S L + LE + D +++Q+ L+ +T +T
Sbjct: 99716 IQPRKVVVFIKPTCPYCRRTQELLSELPFKQGALEFVDITATSDTSKIQDYLATLTGART 99537
Query: 175 V 175
V
Sbjct: 99536 V 99534
>gi|472269680|gb|KB715009.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00303, whole genome
shotgun sequence
Length = 1803839
Score = 38.5 bits (88), Expect = 1.7
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 544 VAIQSGKLLAQRLFGASLE-KCDYINVPTTVFTPLEYGCCGLSEEKAIE 591
VAI +G+ LA RLF + K DY N+PT VF+ G GL+E + ++
Sbjct: 1659133 VAIAAGRKLAHRLFECKEDSKLDYDNIPTVVFSHPPIGTVGLTEGRCLK 1659279
>gi|472269735|gb|KB714954.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00248, whole genome
shotgun sequence
Length = 1766326
Score = 37.7 bits (86), Expect = 2.8
Identities = 33/100 (33%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Frame = +1
Query: 1 GVGGRGERLPRGFAR--VVRVASEGSVRRXXXXXXXXXXXAFRFVSRPGRARSESETLER 58
G+GG GER PRG AR V G R+ FVS G + L
Sbjct: 152563 GLGGGGERWPRGLARGWVSPPGRSGRRRKRSWGGEGRGRGGTGFVSASG--PPSAPALAI 152736
Query: 59 SPPQSPGPGKAGDAPNRRSGHVRG-ARVLSPPGRRARLSS 97
PQ P + G+ R G RG R L PG L S
Sbjct: 152737 PLPQPPSDAQGGEGRGRGGGEARG*GRRLRGPGSHGPLPS 152856
>gi|472269483|gb|KB715206.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00500, whole genome
shotgun sequence
Length = 1176094
Score = 37.4 bits (85), Expect = 3.7
Identities = 24/53 (45%), Positives = 25/53 (47%)
Frame = -2
Query: 48 RARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 100
R R+E E PP P G A P R SGH RG P GR L SPGP
Sbjct: 699372 RMRAEQPGSEGPPPPPPEWGPAHSPPERSSGHCRG-----PAGR--NLPSPGP 699235
>gi|472264699|gb|KB719958.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold05252, whole genome
shotgun sequence
Length = 76384
Score = 36.6 bits (83), Expect = 6.3
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -2
Query: 48 RARSESETLERS----PPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 100
RA + TL+ S P QS G G AG AP +GH RG LSP S+P P
Sbjct: 57762 RAVQKGVTLKTSSSGLPSQSGGRGAAGTAPGAATGHSRGFPALSPLPGAPLASAPRP 57592
>gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00823, whole genome
shotgun sequence
Length = 893735
Score = 36.6 bits (83), Expect = 6.3
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Frame = -1
Query: 58 RSPPQSPGPGKAGDAPN--RRSGHVRGARVLSP---------PGRR-ARLSSPGP 100
R P++PGPG G P RR G GARVL PGRR +R SPGP
Sbjct: 428528 RRGPRAPGPGVGGHGPRVPRRRGRGPGARVLGKAGGGSRAWVPGRRGSRAWSPGP 428364
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,499,096,324
Number of Sequences: 16710
Number of extensions: 37964547
Number of successful extensions: 182517
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 1360
Number of HSP's that attempted gapping in prelim test: 158053
Number of HSP's gapped (non-prelim): 63549
length of query: 698
length of database: 1,052,295,386
effective HSP length: 140
effective length of query: 558
effective length of database: 1,049,955,986
effective search space: 585875440188
effective search space used: 585875440188
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)