Command line: [exonerate -m p2g --showtargetgff -q ./TR2.fa -t TR2.carpeta/genomic.fa]
Hostname: [ws116037]
C4 Alignment:
------------
Query: SPP00000138_2.0 # Protein # Thioredoxin reductase 2 (TR2) # Human (Homo sapiens)
Target: gi|472269750|gb|KB714939.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00233, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 140
Query range: 81 -> 290
Target range: 1205170 -> 1204549
82 : LeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAl : 100
||||||.!!|||||||||||||||||||||:!!|||||||||:!!||| .!..!
LeuGlySerThrCysValAsnValGlyCysValProLysLysValMetTrpAsnTh
1205170 : CTGGGCAGCACATGCGTGAATGTTGGATGTGTACCCAAAAAAGTAATGTGGAACAC : 1205116
101 : aAlaLeuLeuGlyGlyLeuIleGlnAspAlaProAsnTyrGlyTrpGluValAlaG : 119
!.!!:!!! !..!! !!!!!!:!!.||| ! !:!!||||||!:::!! !..!:
rThrValHisSerGluPheMetHisAspHisValAspTyrGlyPheGlnSerCysL
1205115 : AACTGTCCACTCTGAATTCATGCACGATCATGTTGATTACGGCTTTCAAAGTTGTA : 1205059
120 : lnProValProHisAspTrpArgLysMetAlaGluAlaValGlnAsnHisValLys : 137
!! ! ! !:!!|||!.!! !!: !||| ! !.!. !:!!:!!!..
ysSer---LysPheAsnTrpHisIleIleLysGluLysArgAspAlaTyrLeuSer
1205058 : AGAGT---AAATTCAATTGGCACATTATAAAGGAAAAGCGTGATGCCTATTTGAGC : 1205008
138 : SerLeuAsnTrpGlyHisArgValGlnLeuGlnAspArgLysValLysTyrPheAs : 156
!!!|||||| !:!!!:! !.!.||| ! ! ! :!!:!! !.!!.!
CysLeuAsnThrIleTyrGlnAsnAsnLeuThrLysSerHisIleGluIleIleGl
1205007 : TGCCTGAATACCATCTATCAAAATAATCTAACCAAGTCCCATATAGAAATCATCCA : 1204951
157 : nIleLysAlaSerPheValAspGluHisThrValCysGlyValAlaLysGlyGlyL : 175
. ! ! |||||||||..! !!!:! ! ! ! ! !! !!.!!!.|||..!|
nGlyHisAlaSerPheThrCysAspLeuGluProThrValGluValAsnGlyAsnL
1204950 : GGGCCACGCATCATTCACGTGTGATCTCGAGCCCACAGTAGAGGTCAATGGGAACA : 1204894
176 : ysGluIleLeuLeuSerAlaAspHisIleIleIleAlaThrGlyGlyArgProArg : 193
|| ! !!!!|||..!:!!|||:!:||||||||||||||| !||| !
ys---------TyrThrAlaSerTyrIleLeuIleAlaThrGlyGlyLeuProSer
1204893 : AA---------TACACTGCTTCTTACATCCTGATTGCCACAGGTGGCTTACCCTCA : 1204849
194 : TyrProThrHisIleGlu<->GlyAlaLeuGluTyrGlyIleThrSerAspAspIl : 211
! !||| !.!.! !:!! !!.! !.!. |||! !|||||||||! .!
CysProGlnGluSerGlnIleProGlyAlaAsnLeuGlyLysThrSerAspGlyPh
1204848 : TGTCCTCAGGAGAGCCAGATCCCCGGTGCCAACCTAGGAAAAACCAGTGATGGATT : 1204792
212 : ePheTrpLeuLysGluSerProGlyLysThrLeuValVal--GlyAlaSerTyrVa : 229
!! ! |||:!!|||! !||||||:::!:!:!!:!!|||## |||.!!|||:!
eSerGlnLeuGluGluLeuProGlyArgSerValIleVal##---AlaGlyTyrIl
1204791 : TTCCCAATTGGAAGAATTGCCTGGCCGCAGTGTCATTGTTGT---GCAGGCTACAT : 1204739
230 : lAlaLeuGluCysAlaGlyPheLeuThrGlyIleGlyLeuAspThrThrIleMetM : 248
!!.!:!!! ! ||||||.!!|||:!!!.!:!:|||! ! ! |||:!!:!!|||!
eValValAlaIleAlaGlyIleLeuSerAlaLeuGlySerLysThrSerLeuMetI
1204738 : TGTTGTAGCGATAGCTGGGATTCTTTCTGCTCTGGGTTCAAAGACATCACTAATGA : 1204682
249 : etArgSer----IleProLeuArgGlyPheAspGlnGlnMetSerSerMetValIl : 265
!:! !:!!####! !||||||..!||||||..! !!:||||||! !!
leProAla####LysValLeuArgAsnPheAspSerIleIleSerSerAsnCysTh
1204681 : TACCGGCTTGATAAGGTACTTAGAAATTTTGATTCAATTATCAGTTCAAACTGCAC : 1204627
266 : eGluHisMetAlaSerHisGlyThrArgPheLeuArgGlyCysAlaProSerArgV : 284
!|||.!.:!!! !!:! !|||! !..! !!|||!:! !! ! !!.!..!|
rGluGluLeuGluAsnSerGlyIleGluValLeuLysTyrSerGlnValLysGluV
1204626 : TGAAGAGCTGGAGAATTCTGGCATAGAGGTCCTGAAGTACTCACAGGTCAAGGAAG : 1204570
285 : alArgArgLeuProAspGly : 290
||!:!!:! ! !!...|||
alLysLysThrSerSerGly
1204569 : TTAAAAAGACTTCTTCAGGC : 1204550
vulgar: SPP00000138_2.0 81 290 . gi|472269750|gb|KB714939.1| 1205170 1204549 - 140 M 39 117 G 1 0 M 54 162 G 3 0 M 21 63 G 0 3 M 25 75 F 0 2 G 1 0 M 25 75 F 0 4 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269750|gb|KB714939.1| exonerate:protein2genome:local gene 1204550 1205170 140 - . gene_id 1 ; sequence SPP00000138_2.0 ; gene_orientation .
gi|472269750|gb|KB714939.1| exonerate:protein2genome:local cds 1204550 1205170 . - .
gi|472269750|gb|KB714939.1| exonerate:protein2genome:local exon 1204550 1205170 . - . insertions 3 ; deletions 5 ; frameshifts 6
gi|472269750|gb|KB714939.1| exonerate:protein2genome:local similarity 1204550 1205170 140 - . alignment_id 1 ; Query SPP00000138_2.0 ; Align 1205171 82 117 ; Align 1205054 122 162 ; Align 1204892 179 63 ; Align 1204826 200 75 ; Align 1204749 226 75 ; Align 1204670 251 120
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000138_2.0 # Protein # Thioredoxin reductase 2 (TR2) # Human (Homo sapiens)
Target: gi|472269750|gb|KB714939.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00233, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 136
Query range: 309 -> 401
Target range: 1204483 -> 1204208
310 : AspThrValLeuTrpAlaIleGlyArgValProAspThrArg--SerLeuAsnLeu : 327
||| !:!!||||||||||||||||||! !|||:!!:!!!!!##||||||||||||
AspCysLeuLeuTrpAlaIleGlyArgAspProAsnSerSer##SerLeuAsnLeu
1204483 : GACTGCCTGCTATGGGCCATTGGGCGGGACCCAAACTCCAGTGGAGTCTGAATTTA : 1204430
328 : GluLysAlaGlyValAspThrSerProAspThrGlnLysIleLeuValAspSerAr : 346
.!.|||!.!|||:!!.!.|||..! |||! ! ! |||:!!||||||..!
AsnLysValGlyIleGlnThrAsp---AspLysGlyHisIleIleValAspGluPh
1204429 : AACAAAGTGGGGATTCAAACCGAT---GACAAAGGTCATATCATAGTAGATGAATT : 1204376
347 : gGluAlaThrSerValProHisIleTyrAlaIleGlyAspValValGluGlyArgP : 365
!:!! !||||||||| ! !|||||||||:!!||||||:!! !..! !:!
eGlnAsnThrSerValLysGlyIleTyrAlaValGlyAspMetCysArg---LysA
1204375 : CCAGAATACCAGCGTAAAAGGCATCTATGCAGTTGGGGACATGTGTAGA---AAAG : 1204322
366 : roGluLeuThrProIleAlaIleMetAlaGlyArgLeuLeuValGlnArgLeuPhe : 383
!! ||||||||| !|||||| |||||| !! !|||!.!!!.||||||!!.
laLeuLeuThrProGlyAlaIleAlaAlaGly***LysLeuAlaHisArgLeuLeu
1204321 : CTCTTCTTACTCCAGGTGCCATAGCTGCTGGCTGAAAACTTGCCCATAGACTTTTG : 1204268
384 : GlyGlySerSerAsp<->LeuMetAspTyrAspAsnValProThrThrValPheTh : 401
! ! !!!.!..!||| !:!:|||||||||||| !!||||||..!:!!|||!:
GluCysLysGluAspSerLysLeuAspTyrAspAsnPheProThrValIlePheSe
1204267 : GAATGCAAAGAAGATTCCAAATTAGACTATGACAACTTCCCCACAGTCATCTTCAG : 1204211
402 : r : 401
!
r
1204210 : C : 1204209
vulgar: SPP00000138_2.0 309 401 . gi|472269750|gb|KB714939.1| 1204483 1204208 - 136 M 14 42 F 0 2 M 12 36 G 1 0 M 26 78 G 1 0 M 25 75 G 0 3 M 13 39
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269750|gb|KB714939.1| exonerate:protein2genome:local gene 1204209 1204483 136 - . gene_id 2 ; sequence SPP00000138_2.0 ; gene_orientation .
gi|472269750|gb|KB714939.1| exonerate:protein2genome:local cds 1204209 1204483 . - .
gi|472269750|gb|KB714939.1| exonerate:protein2genome:local exon 1204209 1204483 . - . insertions 3 ; deletions 2 ; frameshifts 2
gi|472269750|gb|KB714939.1| exonerate:protein2genome:local similarity 1204209 1204483 136 - . alignment_id 2 ; Query SPP00000138_2.0 ; Align 1204484 310 42 ; Align 1204440 324 36 ; Align 1204404 337 78 ; Align 1204326 364 75 ; Align 1204248 389 39
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis