TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000138_2.0 # Protein # Thioredoxin reductase 2 (TR2) #
Human (Homo sapiens)
(524 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472269750|gb|KB714939.1| Leptonychotes weddellii isolate WS11... 86 2e-42
gi|472266971|gb|KB717686.1| Leptonychotes weddellii isolate WS11... 107 2e-21
gi|472268805|gb|KB715852.1| Leptonychotes weddellii isolate WS11... 104 1e-20
gi|472267228|gb|KB717429.1| Leptonychotes weddellii isolate WS11... 100 3e-19
gi|472267774|gb|KB716883.1| Leptonychotes weddellii isolate WS11... 52 8e-05
gi|472269680|gb|KB715009.1| Leptonychotes weddellii isolate WS11... 43 0.047
gi|472267847|gb|KB716810.1| Leptonychotes weddellii isolate WS11... 42 0.14
gi|472267058|gb|KB717599.1| Leptonychotes weddellii isolate WS11... 39 0.89
>gi|472269750|gb|KB714939.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00233, whole genome
shotgun sequence
Length = 2014995
Score = 85.9 bits (211), Expect(3) = 2e-42
Identities = 79/277 (28%), Positives = 127/277 (45%), Gaps = 7/277 (2%)
Frame = -3
Query: 53 ACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPN 112
A A+ A+LG + A+V+ + LG TCVNVGC+PKK+M + + D +
Sbjct: 1205230 ASARRVAELGARAAMVESHK---------LGSTCVNVGCVPKKVMWNTTVHSEFMHDHVD 1205078
Query: 113 YGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAK 172
YG++ + +W + E ++ LN ++ L ++ ASF +
Sbjct: 1205077 YGFQSCKS-KFNWHIIKEKRDAYLSCLNTIYQNNLTKSHIEIIQGHASFTCDLEPTVEVN 1204901
Query: 173 GGKEILLSADHIIIATGGRPRYP--THIEGALEYGITSDDIFWLKESPGKTLVVGASYVA 230
G K +A +I+IATGG P P + I GA G TSD L+E PG++++V + +
Sbjct: 1204900 GNK---YTASYILIATGGLPSCPQESQIPGA-NLGKTSDGFSQLEELPGRSVIVVQATLL 1204733
Query: 231 LECAG-FLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPD 289
G FL + LR FD +SS E + + G L+ V++
Sbjct: 1204732 *R*LGFFLLWVQRHH**YRLDKVLRNFDSIISSNCTEELENSGIEVLKYSQVKEVKKTSS 1204553
Query: 290 GQLQVTWEDSTTGKEDTGT----FDTVLWAIGRVPDT 322
G L++ G++ T D +LWAIGR P++
Sbjct: 1204552 G-LELCMIT*VPGRKPILTTIPDVDCLLWAIGRDPNS 1204445
Score = 75.1 bits (183), Expect(3) = 2e-42
Identities = 40/105 (38%), Positives = 65/105 (61%)
Frame = -1
Query: 403 LEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQCYVKMVCLREPPQLVLG 462
L +G VGL+E+E++ ++ +E+V+ Y + P+ + V + ++C +KMVC ++V G
Sbjct: 1204188 LLFGIVGLTEDESIYKY*KENVKTYSTTFTPI-YHVVTKKKTKCVMKMVCATAEEKVV-G 1204015
Query: 463 LHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKL 507
+H G E+ QGFA+ +K GA+ A TV IHPT SE +V L
Sbjct: 1204014 IHTQGIGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEGLVML 1203880
Score = 58.2 bits (139), Expect(3) = 2e-42
Identities = 40/90 (44%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Frame = -2
Query: 324 SLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLF 383
SLNL K G+ T D I+VD + TSV IYA+GD+ + LTP AI AG L RL
Sbjct: 1204439 SLNLNKVGIQTD-DKGHIIVDEFQNTSVKGIYAVGDMCR-KALLTPGAIAAG*KLAHRLL 1204266
Query: 384 GGSSD-LMDYDNVPTTVFT---PLEYGCVG 409
D +DYDN PT +F+ P C+G
Sbjct: 1204265 ECKEDSKLDYDNFPTVIFSHHHPPPPSCLG 1204176
>gi|472266971|gb|KB717686.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02980, whole genome
shotgun sequence
Length = 294865
Score = 107 bits (267), Expect = 2e-21
Identities = 49/61 (80%), Positives = 55/61 (90%)
Frame = -1
Query: 258 QQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIG 317
QQMSS+V E+MAS GT+FLRGC PSRVRRLPDGQLQVTWED T+GKED GTF+TVLWA G
Sbjct: 81337 QQMSSLVTEYMASQGTQFLRGCTPSRVRRLPDGQLQVTWEDLTSGKEDVGTFNTVLWATG 81158
Query: 318 R 318
+
Sbjct: 81157 K 81155
Score = 97.1 bits (240), Expect = 3e-18
Identities = 47/72 (65%), Positives = 54/72 (75%)
Frame = -3
Query: 73 PSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMAEAV 132
P+ GTRWGLGGTCVNVGCIPKKLMHQAALLGG+I+DA +YGW + QPV HDW A +
Sbjct: 99992 PNMPGTRWGLGGTCVNVGCIPKKLMHQAALLGGMIRDATHYGWAI-QPVLHDW*G-AHPL 99819
Query: 133 QNHVKSLNWGHR 144
+ S WG R
Sbjct: 99818 TAPLCSSRWGRR 99783
Score = 80.5 bits (197), Expect = 3e-13
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = -2
Query: 482 KCGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCXG 524
+CGASY Q+M+TVGIHPTC+EEV KLRISKRSGLDPTVTGC G
Sbjct: 64011 RCGASYVQLMQTVGIHPTCAEEVAKLRISKRSGLDPTVTGC*G 63883
Score = 77.4 bits (189), Expect = 2e-12
Identities = 37/53 (69%), Positives = 45/53 (84%)
Frame = -1
Query: 313 LWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRP 365
L+ GR+P+TRSLNLEKAGV +P++QKILVD++E TSVPHIYAIGDV E P
Sbjct: 71413 LFPSGRIPETRSLNLEKAGVKINPNSQKILVDAQETTSVPHIYAIGDVAEVWP 71255
Score = 73.9 bits (180), Expect = 2e-11
Identities = 39/58 (67%), Positives = 44/58 (75%), Gaps = 7/58 (12%)
Frame = -3
Query: 445 QCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIK-------CGASYAQVMRTVG 495
+C +MVCLR+PPQLVLGLHFLGPNAGEVTQGFALGIK A+ A+V TVG
Sbjct: 65876 RCGFQMVCLRKPPQLVLGLHFLGPNAGEVTQGFALGIK*VRRNVGVRAARARVALTVG 65703
Score = 72.0 bits (175), Expect = 9e-11
Identities = 37/49 (75%), Positives = 39/49 (79%)
Frame = -1
Query: 395 VPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDA 443
VPTTVFTPLEYGCVGLSEEEAVARHG+EHVEV P + V GRDA
Sbjct: 67726 VPTTVFTPLEYGCVGLSEEEAVARHGEEHVEVRQG---PEDRGVPGRDA 67589
Score = 60.8 bits (146), Expect = 2e-07
Identities = 27/30 (90%), Positives = 30/30 (100%)
Frame = -2
Query: 229 VALECAGFLTGIGLDTTIMMRSIPLRGFDQ 258
VALECAGFLTG+GLDTT+M+RSIPLRGFDQ
Sbjct: 83877 VALECAGFLTGLGLDTTVMIRSIPLRGFDQ 83788
Score = 56.2 bits (134), Expect = 5e-06
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = -2
Query: 360 VVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNV 395
V +GRPELTP A+MAG+LL +RL G SSD+MDYDNV
Sbjct: 68115 VHQGRPELTPTAVMAGKLLARRLCGQSSDVMDYDNV 68008
Score = 55.5 bits (132), Expect = 9e-06
Identities = 36/78 (46%), Positives = 43/78 (55%), Gaps = 19/78 (24%)
Frame = -1
Query: 163 DEHTVCGVAK-------GGKEILLSAD---HIIIATGGRPR---------YPTHIEGALE 203
+E TVCG K GG ++S + + +G RP + IEGALE
Sbjct: 93184 EEQTVCGARKRTHGWAGGGSA*VVSTEWSSSLGEISGDRPSDALLTLILFFSG*IEGALE 93005
Query: 204 YGITSDDIFWLKESPGKT 221
YGITSDDIFWLKESPGKT
Sbjct: 93004 YGITSDDIFWLKESPGKT 92951
Score = 53.5 bits (127), Expect = 3e-05
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = -1
Query: 150 RKVKYFNIKASFVDEHTVCGVAKGGKEI 177
RKVKYFN+KASFV+EHTVC VAK GKE+
Sbjct: 97417 RKVKYFNVKASFVNEHTVCSVAKDGKEV 97334
Score = 52.8 bits (125), Expect = 6e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -1
Query: 426 VYHAHYKPLEFTVAGRDASQCYVKMVCLREP 456
VYHA+YKPLEFTVA RDASQCY+K+ L P
Sbjct: 66112 VYHAYYKPLEFTVAQRDASQCYIKVSVLEGP 66020
Score = 52.0 bits (123), Expect = 1e-04
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = -3
Query: 128 MAEAVQNHVKSLNWGHRVQLQDR 150
MAEAVQNHVKSLNWGHRVQLQDR
Sbjct: 99284 MAEAVQNHVKSLNWGHRVQLQDR 99216
Score = 45.4 bits (106), Expect = 0.009
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = -2
Query: 176 EILLSADHIIIATGGRPRYPTHI 198
+ LLSA+HI+IATGGRPRYPTH+
Sbjct: 96840 QTLLSAEHIVIATGGRPRYPTHV 96772
Score = 41.2 bits (95), Expect = 0.18
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = -2
Query: 58 AAQLGRKVAVVDYVEPSPQGTRWGLGGTCV 87
AAQLG+KVAVVDYVEPSP+G +G C+
Sbjct: 100572 AAQLGKKVAVVDYVEPSPRGR*PRMGVFCL 100483
>gi|472268805|gb|KB715852.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01146, whole genome
shotgun sequence
Length = 801885
Score = 104 bits (260), Expect = 1e-20
Identities = 50/77 (64%), Positives = 60/77 (77%)
Frame = +3
Query: 208 SDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEH 267
SDD+F L PGKTLVVGASYVALECAGFL GIGLD T+M+RSI LRGFDQ M++ + EH
Sbjct: 492126 SDDLFSLPYCPGKTLVVGASYVALECAGFLVGIGLDVTVMVRSILLRGFDQDMANKIGEH 492305
Query: 268 MASHGTRFLRGCAPSRV 284
M HG +F++ P +V
Sbjct: 492306 MEEHGVKFIKQFVPIKV 492356
Score = 70.1 bits (170), Expect = 4e-10
Identities = 30/39 (76%), Positives = 33/39 (84%)
Frame = +1
Query: 81 GLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQ 119
GLGGTCVNVGCIPKKLMHQAALLG +QD+ NYGW +
Sbjct: 482602 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWNTEE 482718
Score = 67.8 bits (164), Expect = 2e-09
Identities = 33/50 (66%), Positives = 40/50 (80%)
Frame = +3
Query: 338 TQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSS 387
T KI V E T+VP+IYAIGDV+EG+ ELTP+AI AGRLL QRL+ GS+
Sbjct: 500439 TGKIPVTDEEQTNVPYIYAIGDVLEGKLELTPVAIQAGRLLAQRLYAGSN 500588
Score = 66.6 bits (161), Expect = 4e-09
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Frame = +2
Query: 121 VPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGV-----AKGGK 175
V HDW KM EAVQNH+ SLNWG+RV L+++KV Y N FV H + + +GGK
Sbjct: 490193 VKHDWNKMTEAVQNHIGSLNWGYRVALREKKVTYENAFGQFVGPHRIKVIV*LVWGRGGK 490372
Query: 176 E---ILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWL 214
E IL+ ++ T + GA G+ ++W+
Sbjct: 490373 EKVIILVEGKAMVTQTVQFGNFAVTSYGAFSCGVVV-*VYWI 490495
Score = 63.9 bits (154), Expect = 3e-08
Identities = 27/43 (62%), Positives = 33/43 (76%)
Frame = +1
Query: 460 VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSE 502
V+G H LGPNAGEVTQGFA +KCG + Q+ T+GIHP C+E
Sbjct: 513892 VVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE 514020
Score = 58.9 bits (141), Expect = 8e-07
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +1
Query: 391 DYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEV 426
DY+NVPTTVFTPLEYG GLSEE+AV G+E++EV
Sbjct: 507892 DYENVPTTVFTPLEYGACGLSEEKAVETFGEENIEV 507999
Score = 41.6 bits (96), Expect = 0.14
Identities = 13/28 (46%), Positives = 24/28 (85%)
Frame = +3
Query: 425 EVYHAHYKPLEFTVAGRDASQCYVKMVC 452
+VYH+++ PLE+T+ RD+++CY K++C
Sbjct: 510225 QVYHSYFWPLEWTIPSRDSNKCYAKVIC 510308
Score = 38.1 bits (87), Expect = 1.5
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +1
Query: 56 KEAAQLGRKVAVVDYVEPSPQGTRWG 81
+EAA+ +K+ V+D+V P+P GTRWG
Sbjct: 480505 QEAARYDKKIMVLDFVTPTPHGTRWG 480582
>gi|472267228|gb|KB717429.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02723, whole genome
shotgun sequence
Length = 332153
Score = 100 bits (248), Expect = 3e-19
Identities = 49/77 (63%), Positives = 57/77 (74%)
Frame = +1
Query: 208 SDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEH 267
SDD+F L PGKTLVVGASYV LECAGFL GIGLD T+M+RS+ LRGFDQ+M+ V +
Sbjct: 114523 SDDLFSLPYCPGKTLVVGASYVGLECAGFLAGIGLDVTVMVRSVLLRGFDQEMAEKVGSY 114702
Query: 268 MASHGTRFLRGCAPSRV 284
M HG +FLR P V
Sbjct: 114703 MEQHGVKFLRKFVPVMV 114753
Score = 68.6 bits (166), Expect = 1e-09
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = +2
Query: 81 GLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQ 119
GLGGTCVNVGC+PKKLMHQAALLG + DA +GWE +Q
Sbjct: 104789 GLGGTCVNVGCVPKKLMHQAALLGQALSDARKFGWEYSQ 104905
Score = 62.0 bits (149), Expect = 1e-07
Identities = 27/53 (50%), Positives = 41/53 (77%)
Frame = +3
Query: 340 KILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDY 392
KI V+ E T+VP++YA+GD++EG+ ELTP+AI AG+LL +RLF G + + +
Sbjct: 125925 KIPVNDVEQTNVPYVYAVGDILEGKLELTPVAIQAGKLLARRLFAGHLEKVSF 126083
Score = 62.0 bits (149), Expect = 1e-07
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +1
Query: 460 VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSE 502
V+G H LGPNAGE+TQGFA +KCG + + T+GIHPTC E
Sbjct: 146641 VIGFHVLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGE 146769
Score = 54.3 bits (129), Expect = 2e-05
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +3
Query: 391 DYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEV 426
DY NVPTTVF PLEYGC GLSEE+A+ + +E++EV
Sbjct: 129900 DYVNVPTTVFAPLEYGCCGLSEEKAIEVYKKENLEV 130007
Score = 53.5 bits (127), Expect = 3e-05
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +1
Query: 121 VPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTV 167
V H+W M EA+QN++ SLNWG R+ L+++ V Y N FV+ H +
Sbjct: 111427 VRHNWETMTEAIQNYIGSLNWGCRLSLREKAVAYVNSYGEFVEHHKI 111567
Score = 42.4 bits (98), Expect = 0.080
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +3
Query: 424 VEVYHAHYKPLEFTVAGRDASQCYVKMVC 452
++VYH + PLE+TVAGRD + CY K++C
Sbjct: 144207 LQVYHTLFWPLEWTVAGRDNNTCYAKIIC 144293
Score = 39.3 bits (90), Expect = 0.68
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 57 EAAQLGRKVAVVDYVEPSPQGTRWG 81
EAA LG+KV V+D+V PSPQG WG
Sbjct: 103048 EAAILGKKVMVLDFVVPSPQGMSWG 103122
>gi|472267774|gb|KB716883.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02177, whole genome
shotgun sequence
Length = 437307
Score = 52.4 bits (124), Expect = 8e-05
Identities = 26/53 (49%), Positives = 33/53 (62%)
Frame = -1
Query: 456 PPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKLR 508
P V+G+H G E+ QGFA+ +K GA+ A TV IHPT SEE+V LR
Sbjct: 382080 PSP*VVGIHMQGIGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTLR 381922
>gi|472269680|gb|KB715009.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00303, whole genome
shotgun sequence
Length = 1803839
Score = 43.1 bits (100), Expect = 0.047
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 370 IAIMAGRLLVQRLFGGSSDL-MDYDNVPTTVFTPLEYGCVGLSE 412
+AI AGR L RLF D +DYDN+PT VF+ G VGL+E
Sbjct: 1659133 VAIAAGRKLAHRLFECKEDSKLDYDNIPTVVFSHPPIGTVGLTE 1659264
>gi|472267847|gb|KB716810.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02104, whole genome
shotgun sequence
Length = 494795
Score = 41.6 bits (96), Expect = 0.14
Identities = 27/61 (44%), Positives = 37/61 (60%)
Frame = -3
Query: 354 IYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEE 413
IYAIGDVV G P L A G + V+ + GG+ + DY+ VP+ ++T E VG SEE
Sbjct: 158676 IYAIGDVVAG-PMLAHKAEDEGIICVEGMAGGAVHI-DYNCVPSVIYTHPEVAWVGKSEE 158503
Query: 414 E 414
+
Sbjct: 158502 Q 158500
>gi|472267058|gb|KB717599.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02893, whole genome
shotgun sequence
Length = 332524
Score = 38.9 bits (89), Expect = 0.89
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Frame = -1
Query: 73 PSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDWR------ 126
PS T WG GG C V + AALL G + P+ W P +W+
Sbjct: 74107 PSSVPTAWGSGGRCELV----TRCQPHAALLLGYSRGPPHKAWLSG---PREWQGRGLC* 73949
Query: 127 -KMAEAVQNHVKSLNWGHRVQ-------LQDRKVKYFNIK 158
+ EA+ ++ WGHR LQDR +Y +K
Sbjct: 73948 WAILEAISG*LQGTCWGHRKAIQVYAGVLQDRVSRYMTVK 73829
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,964,718,721
Number of Sequences: 16710
Number of extensions: 30422519
Number of successful extensions: 114318
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 470
Number of HSP's that attempted gapping in prelim test: 108310
Number of HSP's gapped (non-prelim): 19010
length of query: 524
length of database: 1,052,295,386
effective HSP length: 137
effective length of query: 387
effective length of database: 1,050,006,116
effective search space: 406352366892
effective search space used: 406352366892
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)