Command line: [exonerate -m p2g --showtargetgff -q ./TR1.fa -t TR1.carpeta/genomic.fa] Hostname: [ws116037] C4 Alignment: ------------ Query: SPP00000129_2.0 # Protein # Thioredoxin reductase 1 (TR1) # Human (Homo sapiens) Target: gi|472268805|gb|KB715852.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01146, whole genome shotgun sequence Model: protein2genome:local Raw score: 2642 Query range: 41 -> 649 Target range: 432657 -> 522986 42 : GluAsnProAlaGlyPheThrSerThrAlaThrAlaAspSerArgAlaLeuLeuGlnA : 61 .....!|||:!!||| !!:!!:! !!::!! !:!!||| !!||||||! !|||::!| SerGlyProSerGlyProSerAsnProSerIleSerAspProArgAlaArgLeuArgA 432658 : AGTGGCCCCTCAGGGCCCAGCAACCCAAGCATCTCGGACCCCAGAGCCCGGCTTAGGG : 432715 62 : laTyrIleAspGlyHisSerValValIlePheSerArgSerThrCysThrArgCysTh : 80 |||||||||||.!!||| !!|||||||||||||||!:!|||! !|||! !||||||.! laTyrIleAspSerHisProValValIlePheSerLysSerMetCysLysArgCysAl 432716 : CCTATATAGACAGCCACCCTGTAGTCATCTTCAGCAAGTCCATGTGCAAGCGCTGTGC : 432772 81 : rGluValLysLysLeuPheLysSerLeuCysValProTyrPheValLeuGluLeuAsp : 99 !|||||| !:!||| !! !...!.! !!:!!! ! !|||||| !! ! aGluVal---ArgLeuGlnProProGlyAlaAlaThrHisCysCysLeuGluLysVal 432773 : AGAGGTA---AGGCTTCAGCCTCCAGGAGCAGCAACACACTGTTGCCTTGAGAAAGTT : 432826 100 : GlnThr{G} >>>> Target Intron 1 >>>> {lu}AspGlyArgAlaLeuG : 108 :!!|||{ } 25886 bp {!!}|||!.!|||!.!|||| GluThr{*}-+ ++{**}AspAlaArgGlyLeuG 432827 : GAGACT{T}ct.........................ag{AG}GACGCCAGGGGCTTGG : 458739 109 : luGlyThrLeuSerGluLeuAlaAlaGluThrAspLeuProValValPheValLysGl : 127 || !!.!!||||||:!!|||.!!:!!|||||||||:!!|||:!!||||||||||||!: luArgAlaLeuSerGlnLeuThrSerGluThrAspValProLeuValPheValLysAr 458740 : AGAGAGCGCTCTCGCAGCTGACCTCGGAAACCGACGTGCCCTTGGTGTTCGTGAAGCG : 458796 128 : nArgLysIleGlyGlyHisGlyProThrLeuLys >>>> Target Intron 2 > : 139 !||||||||||||||||||||||||||||||!:! 19622 bp gArgLysIleGlyGlyHisGlyProThrLeuArg++ 458797 : GCGAAAGATAGGCGGCCATGGTCCAACCCTGAGGgt...................... : 458834 140 : >>> AlaTyrGlnGluGlyArgLeuGlnLysLeuLeuLysMetAsnGlyProGluAs : 156 ||||||||||||||||||||||||||||||||||||||||||||| !!||||| ++AlaTyrGlnGluGlyArgLeuGlnLysLeuLeuLysMetAsnGlySerGluAs 458835 : ...agGCTTATCAGGAGGGCAGACTTCAAAAGCTACTAAAAATGAATGGCTCTGAGGA : 478505 157 : pLeuProLysSerTyrAspTyrAspLeuIleIleIleGlyGlyGlySerGlyGlyLeu : 175 |||||||:!!:!!||||||||||||||||||||||||||||||||||||||||||||| pLeuProGluAlaTyrAspTyrAspLeuIleIleIleGlyGlyGlySerGlyGlyLeu 478506 : TCTCCCTGAGGCCTACGACTATGACCTCATCATCATCGGAGGGGGCTCAGGAGGACTG : 478562 176 : AlaAlaAlaLys >>>> Target Intron 3 >>>> GluAlaAlaGlnTyrGl : 185 |||||||||||| 1931 bp |||||||||::!|||! AlaAlaAlaLys+- ++GluAlaAlaArgTyrAs 478563 : GCAGCCGCCAAGgc.........................agGAGGCAGCCAGATATGA : 480523 186 : yLysLysValMetValLeuAspPheValThrProThrProLeuGlyThrArgTrp{G} : 204 !||||||:!!||||||||||||||||||||||||||||||! !||||||||||||{|} pLysLysIleMetValLeuAspPheValThrProThrProHisGlyThrArgTrp{G} 480524 : CAAGAAGATAATGGTCCTGGATTTTGTCACTCCAACCCCTCATGGAACTAGATGG{G} : 480580 205 : >>>> Target Intron 4 >>>> {ly}LeuGlyGlyThrCysValAsnValG : 213 2022 bp {||}||||||||||||||||||||||||| ++ ++{ly}LeuGlyGlyThrCysValAsnValG 480581 : gt.........................ag{GT}CTTGGAGGAACATGTGTGAATGTGG : 482629 214 : lyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuGlnAs : 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| lyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuGlnAs 482630 : GTTGCATACCTAAAAAACTGATGCACCAAGCGGCTTTGTTAGGACAAGCCCTACAAGA : 482686 233 : pSerArgAsnTyrGlyTrpLysValGluGluThr{V} >>>> Target Intron : 244 |||||||||||||||||||!!...!||||||! !{|} 7471 bp pSerArgAsnTyrGlyTrpAsnThrGluGluMet{V}++ 482687 : CTCTCGCAACTATGGTTGGAACACCGAGGAGATG{G}gt................... : 482725 245 : 5 >>>> {al}LysHisAspTrpAspArgMetIleGluAlaValGlnAsnHisIleG : 260 {||}||||||||||||:!!!:!|||! !|||||||||||||||||||||| ++{al}LysHisAspTrpAsnLysMetThrGluAlaValGlnAsnHisIleG 482726 : ......ag{TT}AAACATGACTGGAATAAAATGACAGAAGCCGTACAGAACCACATTG : 490241 261 : lySerLeuAsnTrpGlyTyrArgValAlaLeuArgGluLysLysValValTyrGluAs : 279 |||||||||||||||||||||||||||||||||||||||||||||||..!|||||||| lySerLeuAsnTrpGlyTyrArgValAlaLeuArgGluLysLysValThrTyrGluAs 490242 : GCTCTCTGAACTGGGGCTACCGGGTAGCTCTGCGGGAGAAGAAAGTCACCTATGAGAA : 490298 280 : nAlaTyrGlyGlnPheIleGlyProHisArgIleLys >>>> Target Intron : 292 ||||!:!|||||||||:!:|||||||||||||||||| 361 bp nAlaPheGlyGlnPheValGlyProHisArgIleLys++ 490299 : TGCATTTGGGCAGTTTGTGGGTCCTCATAGGATTAAGgt................... : 490339 293 : 6 >>>> AlaThrAsnAsnLysGlyLysGluLysIleTyrSerAlaGluArgPheLe : 308 |||||||||||||||||||||||||||||||||||||||||||||||||| ++AlaThrAsnAsnLysGlyLysGluLysIleTyrSerAlaGluArgPheLe 490340 : ......agGCAACAAATAACAAAGGCAAAGAAAAAATTTATTCAGCAGAGAGATTTCT : 490746 309 : uIleAlaThrGlyGluArgProArgTyrLeuGlyIleProGlyAspLysGluTyrCys : 327 |||||||||||||||||||||||||||||||! !||||||||||||!:!||||||||| uIleAlaThrGlyGluArgProArgTyrLeuAspIleProGlyAspArgGluTyrCys 490747 : CATTGCTACTGGTGAGAGGCCACGTTACTTGGACATCCCTGGTGACAGAGAGTACTGC : 490803 328 : IleSer{Se} >>>> Target Intron 7 >>>> {r}AspAspLeuPheSerL : 336 ||||||{||} 1314 bp {|}|||||||||||||||| IleSer{Se}++ ++{r}AspAspLeuPheSerL 490804 : ATTAGC{AG}gt.........................ag{T}GATGATCTTTTCTCCT : 492144 337 : euProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeuGluCy : 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| euProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeuGluCy 492145 : TACCTTATTGCCCGGGTAAGACGCTGGTGGTTGGAGCATCTTATGTTGCCCTTGAATG : 492201 356 : sAlaGlyPheLeuAlaGlyIleGlyLeuAspValThrValMetValArgSerIleLeu : 374 |||||||||||||!.!|||||||||||||||||||||||||||||||||||||||||| sAlaGlyPheLeuValGlyIleGlyLeuAspValThrValMetValArgSerIleLeu 492202 : TGCTGGATTTCTTGTTGGCATTGGCTTAGATGTTACTGTTATGGTACGATCCATTCTC : 492258 375 : LeuArgGlyPheAspGlnAspMetAlaAsnLysIleGlyGluHisMetGluGluHisG : 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| LeuArgGlyPheAspGlnAspMetAlaAsnLysIleGlyGluHisMetGluGluHisG 492259 : CTTAGAGGATTTGACCAGGACATGGCCAACAAAATTGGGGAACATATGGAAGAACATG : 492318 395 : lyIleLysPheIleArgGlnPheValProIleLys >>>> Target Intron 8 : 406 ||:!!|||||||||!:!|||||||||||||||||| 5361 bp lyValLysPheIleLysGlnPheValProIleLys++ 492319 : GTGTCAAGTTTATAAAACAGTTTGTACCAATAAAAgt..................... : 492356 407 : >>>> ValGluGlnIleGluAlaGlyThrProGlyArgLeuArgValValAlaGlnS : 423 ||||||||||||||||||||||||||||||||||||||||||:!!|||:!!| ++ValGluGlnIleGluAlaGlyThrProGlyArgLeuArgValIleAlaLysS 492357 : ....agGTTGAACAAATTGAAGCAGGGACACCAGGCCGACTCAGGGTGATAGCTAAGT : 497766 424 : erThrAsnSerGluGluIleIleGluGlyGluTyrAsnThr >>>> Target Int : 437 |||||!:!!!!!!:||||||||||||||||||||||||||| 553 b erThrSerCysAspGluIleIleGluGlyGluTyrAsnThr++ 497767 : CCACCAGTTGTGATGAAATCATTGAAGGAGAGTATAATACGgt............... : 497810 438 : ron 9 >>>> ValMetLeuAlaIleGlyArgAspAlaCysThrArgLysIleGlyL : 452 p |||:!!|||||||||||||||||||||||||||||||||||||||| ++ValLeuLeuAlaIleGlyArgAspAlaCysThrArgLysIleGlyL 497811 : ..........agGTATTGCTGGCAATAGGAAGAGATGCTTGCACAAGAAAAATTGGCT : 498406 453 : euGluThrValGlyValLysIleAsnGlu{Ly} >>>> Target Intron 10 > : 462 |||||||||||||||||||||||||||||{||} 2000 bp euGluThrValGlyValLysIleAsnGlu{Ly}++ 498407 : TAGAAACCGTGGGGGTAAAGATAAATGAA{AA}gt....................... : 498440 463 : >>> {s}ThrGlyLysIleProValThrAspGluGluGlnThrAsnValProTyrIl : 479 {|}|||||||||||||||||||||||||||||||||||||||||||||||||| ++{s}ThrGlyLysIleProValThrAspGluGluGlnThrAsnValProTyrIl 498441 : ...ag{G}ACTGGAAAAATACCTGTCACAGATGAAGAGCAGACCAATGTGCCTTACAT : 500487 480 : eTyrAlaIleGlyAspIleLeuGluAspLysValGluLeuThrProValAlaIleGln : 498 ||||||||||||||||:!!||||||! |||:!!|||||||||||||||||||||||| eTyrAlaIleGlyAspValLeuGluGlyLysLeuGluLeuThrProValAlaIleGln 500488 : CTATGCCATTGGCGATGTATTAGAGGGGAAGCTGGAGCTCACCCCAGTAGCAATCCAG : 500544 499 : AlaGlyArgLeuLeuAlaGlnArgLeuTyrAlaGlySerThrValLys >>>> Tar : 515 |||||||||||||||||||||||||||||||||||||||!.!|||||| AlaGlyArgLeuLeuAlaGlnArgLeuTyrAlaGlySerAsnValLys++ 500545 : GCAGGAAGATTGCTGGCTCAGAGGCTTTATGCTGGCTCCAATGTGAAGgt........ : 500597 516 : get Intron 11 >>>> CysAspTyrGluAsnValProThrThrValPheThrPr : 527 7294 bp |||||||||||||||||||||||||||||||||||||| ++CysAspTyrGluAsnValProThrThrValPheThrPr 500598 : ..................agTGTGACTATGAAAATGTTCCAACAACTGTGTTTACTCC : 507925 528 : oLeuGluTyrGlyAlaCysGlyLeuSerGluGluLysAlaValGluLysPheGlyGlu : 546 ||||||||||||||||||||||||||||||||||||||||||||||! !||||||||| oLeuGluTyrGlyAlaCysGlyLeuSerGluGluLysAlaValGluThrPheGlyGlu 507926 : TTTGGAATATGGTGCCTGTGGTCTTTCTGAGGAGAAAGCTGTGGAGACGTTTGGGGAA : 507982 547 : GluAsnIleGlu >>>> Target Intron 12 >>>> ValTyrHisSerTyrP : 556 |||||||||||| 2231 bp |||||||||||||||| GluAsnIleGlu++ ++ValTyrHisSerTyrP 507983 : GAAAATATTGAGgt..........................agGTTTACCATAGTTACT : 510243 557 : heTrpProLeuGluTrpThrIleProSerArgAspAsnAsnLysCysTyrAlaLysIl : 575 |||||||||||||||||||||||||||||||||||!:!||||||||||||||||||:! heTrpProLeuGluTrpThrIleProSerArgAspSerAsnLysCysTyrAlaLysVa 510244 : TCTGGCCGTTGGAGTGGACGATTCCATCAAGAGATAGCAACAAATGTTATGCAAAAGT : 510300 576 : eIleCysAsnThrLysAspAsn >>>> Target Intron 13 >>>> GluArg : 584 !|||||||||! !||||||||| 3562 bp |||||| lIleCysAsnIleLysAspAsn++ ++GluArg 510301 : AATCTGTAATATCAAAGACAATgt..........................agGAACGT : 513889 585 : ValValGlyPheHisValLeuGlyProAsnAlaGlyGluValThrGlnGlyPheAlaA : 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ValValGlyPheHisValLeuGlyProAsnAlaGlyGluValThrGlnGlyPheAlaA 513890 : GTTGTGGGCTTCCACGTACTGGGTCCAAATGCTGGAGAAGTGACACAAGGCTTTGCAG : 513949 605 : laAlaLeuLysCysGlyLeuThrLysLysGlnLeuAspSerThrIleGlyIleHisPr : 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| laAlaLeuLysCysGlyLeuThrLysLysGlnLeuAspSerThrIleGlyIleHisPr 513950 : CTGCCCTTAAGTGTGGACTGACCAAAAAGCAGCTGGACAGTACCATTGGAATCCACCC : 514006 624 : oValCysAlaGlu >>>> Target Intron 14 >>>> ValPheThrThrLeu : 632 ||||||||||||| 8900 bp ||||||||||||||| oValCysAlaGlu++ ++ValPheThrThrLeu 514007 : CGTCTGTGCAGAGgt..........................agGTATTCACGACTCTG : 522933 633 : SerValThrLysArgSerGlyAlaSerIleLeuGlnAlaGlyCysUnkGly : 649 |||||||||||||||||||||!.!||||||||||||||||||||| ||| SerValThrLysArgSerGlyGlySerIleLeuGlnAlaGlyCys***Gly 522934 : TCGGTGACCAAGCGCTCTGGGGGAAGCATCCTCCAGGCCGGCTGCTGAGGT : 522986 vulgar: SPP00000129_2.0 41 649 . gi|472268805|gb|KB715852.1| 432657 522986 + 2642 M 41 123 G 1 0 M 18 54 S 0 1 5 0 2 I 0 25882 3 0 2 S 1 2 M 36 108 5 0 2 I 0 19618 3 0 2 M 41 123 5 0 2 I 0 1927 3 0 2 M 24 72 S 0 1 5 0 2 I 0 2018 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 7467 3 0 2 S 1 2 M 47 141 5 0 2 I 0 357 3 0 2 M 38 114 S 0 2 5 0 2 I 0 1310 3 0 2 S 1 1 M 75 225 5 0 2 I 0 5357 3 0 2 M 31 93 5 0 2 I 0 549 3 0 2 M 25 75 S 0 2 5 0 2 I 0 1996 3 0 2 S 1 1 M 52 156 5 0 2 I 0 7290 3 0 2 M 36 108 5 0 2 I 0 2227 3 0 2 M 32 96 5 0 2 I 0 3558 3 0 2 M 45 135 5 0 2 I 0 8896 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2013-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # gi|472268805|gb|KB715852.1| exonerate:protein2genome:local gene 432658 522986 2642 + . gene_id 1 ; sequence SPP00000129_2.0 ; gene_orientation + gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 432658 432835 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 432658 432835 . + . insertions 0 ; deletions 1 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 432836 432837 . + . intron_id 1 ; splice_site "CT" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 432836 458721 . + . intron_id 1 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 458720 458721 . + . intron_id 0 ; splice_site "AG" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 458722 458831 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 458722 458831 . + . insertions 0 ; deletions 0 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 458832 458833 . + . intron_id 2 ; splice_site "GT" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 458832 478453 . + . intron_id 2 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 478452 478453 . + . intron_id 1 ; splice_site "AG" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 478454 478576 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 478454 478576 . + . insertions 0 ; deletions 0 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 478577 478578 . + . intron_id 3 ; splice_site "GC" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 478577 480507 . + . intron_id 3 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 480506 480507 . + . intron_id 2 ; splice_site "AG" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 480508 480580 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 480508 480580 . + . insertions 0 ; deletions 0 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 480581 480582 . + . intron_id 4 ; splice_site "GT" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 480581 482602 . + . intron_id 4 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 482601 482602 . + . intron_id 3 ; splice_site "AG" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 482603 482722 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 482603 482722 . + . insertions 0 ; deletions 0 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 482723 482724 . + . intron_id 5 ; splice_site "GT" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 482723 490193 . + . intron_id 5 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 490192 490193 . + . intron_id 4 ; splice_site "AG" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 490194 490336 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 490194 490336 . + . insertions 0 ; deletions 0 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 490337 490338 . + . intron_id 6 ; splice_site "GT" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 490337 490697 . + . intron_id 6 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 490696 490697 . + . intron_id 5 ; splice_site "AG" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 490698 490813 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 490698 490813 . + . insertions 0 ; deletions 0 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 490814 490815 . + . intron_id 7 ; splice_site "GT" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 490814 492127 . + . intron_id 7 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 492126 492127 . + . intron_id 6 ; splice_site "AG" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 492128 492353 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 492128 492353 . + . insertions 0 ; deletions 0 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 492354 492355 . + . intron_id 8 ; splice_site "GT" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 492354 497714 . + . intron_id 8 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 497713 497714 . + . intron_id 7 ; splice_site "AG" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 497715 497807 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 497715 497807 . + . insertions 0 ; deletions 0 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 497808 497809 . + . intron_id 9 ; splice_site "GT" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 497808 498360 . + . intron_id 9 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 498359 498360 . + . intron_id 8 ; splice_site "AG" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 498361 498437 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 498361 498437 . + . insertions 0 ; deletions 0 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 498438 498439 . + . intron_id 10 ; splice_site "GT" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 498438 500437 . + . intron_id 10 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 500436 500437 . + . intron_id 9 ; splice_site "AG" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 500438 500594 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 500438 500594 . + . insertions 0 ; deletions 0 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 500595 500596 . + . intron_id 11 ; splice_site "GT" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 500595 507888 . + . intron_id 11 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 507887 507888 . + . intron_id 10 ; splice_site "AG" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 507889 507996 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 507889 507996 . + . insertions 0 ; deletions 0 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 507997 507998 . + . intron_id 12 ; splice_site "GT" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 507997 510227 . + . intron_id 12 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 510226 510227 . + . intron_id 11 ; splice_site "AG" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 510228 510323 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 510228 510323 . + . insertions 0 ; deletions 0 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 510324 510325 . + . intron_id 13 ; splice_site "GT" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 510324 513885 . + . intron_id 13 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 513884 513885 . + . intron_id 12 ; splice_site "AG" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 513886 514020 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 513886 514020 . + . insertions 0 ; deletions 0 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 514021 514022 . + . intron_id 14 ; splice_site "GT" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 514021 522920 . + . intron_id 14 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 522919 522920 . + . intron_id 13 ; splice_site "AG" gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 522921 522986 . + . gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 522921 522986 . + . insertions 0 ; deletions 0 gi|472268805|gb|KB715852.1| exonerate:protein2genome:local similarity 432658 522986 2642 + . alignment_id 1 ; Query SPP00000129_2.0 ; Align 432658 42 123 ; Align 432781 84 54 ; Align 458724 103 108 ; Align 478454 139 123 ; Align 480508 180 72 ; Align 482605 205 117 ; Align 490196 245 141 ; Align 490698 292 114 ; Align 492129 331 225 ; Align 497715 406 93 ; Align 498361 437 75 ; Align 500439 463 156 ; Align 507889 515 108 ; Align 510228 551 96 ; Align 513886 583 135 ; Align 522921 628 66 # --- END OF GFF DUMP --- # -- completed exonerate analysis