Command line: [exonerate -m p2g --showtargetgff -q ./TR1.fa -t TR1.carpeta/genomic.fa]
Hostname: [ws116037]
C4 Alignment:
------------
Query: SPP00000129_2.0 # Protein # Thioredoxin reductase 1 (TR1) # Human (Homo sapiens)
Target: gi|472268805|gb|KB715852.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01146, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 2642
Query range: 41 -> 649
Target range: 432657 -> 522986
42 : GluAsnProAlaGlyPheThrSerThrAlaThrAlaAspSerArgAlaLeuLeuGlnA : 61
.....!|||:!!||| !!:!!:! !!::!! !:!!||| !!||||||! !|||::!|
SerGlyProSerGlyProSerAsnProSerIleSerAspProArgAlaArgLeuArgA
432658 : AGTGGCCCCTCAGGGCCCAGCAACCCAAGCATCTCGGACCCCAGAGCCCGGCTTAGGG : 432715
62 : laTyrIleAspGlyHisSerValValIlePheSerArgSerThrCysThrArgCysTh : 80
|||||||||||.!!||| !!|||||||||||||||!:!|||! !|||! !||||||.!
laTyrIleAspSerHisProValValIlePheSerLysSerMetCysLysArgCysAl
432716 : CCTATATAGACAGCCACCCTGTAGTCATCTTCAGCAAGTCCATGTGCAAGCGCTGTGC : 432772
81 : rGluValLysLysLeuPheLysSerLeuCysValProTyrPheValLeuGluLeuAsp : 99
!|||||| !:!||| !! !...!.! !!:!!! ! !|||||| !! !
aGluVal---ArgLeuGlnProProGlyAlaAlaThrHisCysCysLeuGluLysVal
432773 : AGAGGTA---AGGCTTCAGCCTCCAGGAGCAGCAACACACTGTTGCCTTGAGAAAGTT : 432826
100 : GlnThr{G} >>>> Target Intron 1 >>>> {lu}AspGlyArgAlaLeuG : 108
:!!|||{ } 25886 bp {!!}|||!.!|||!.!||||
GluThr{*}-+ ++{**}AspAlaArgGlyLeuG
432827 : GAGACT{T}ct.........................ag{AG}GACGCCAGGGGCTTGG : 458739
109 : luGlyThrLeuSerGluLeuAlaAlaGluThrAspLeuProValValPheValLysGl : 127
|| !!.!!||||||:!!|||.!!:!!|||||||||:!!|||:!!||||||||||||!:
luArgAlaLeuSerGlnLeuThrSerGluThrAspValProLeuValPheValLysAr
458740 : AGAGAGCGCTCTCGCAGCTGACCTCGGAAACCGACGTGCCCTTGGTGTTCGTGAAGCG : 458796
128 : nArgLysIleGlyGlyHisGlyProThrLeuLys >>>> Target Intron 2 > : 139
!||||||||||||||||||||||||||||||!:! 19622 bp
gArgLysIleGlyGlyHisGlyProThrLeuArg++
458797 : GCGAAAGATAGGCGGCCATGGTCCAACCCTGAGGgt...................... : 458834
140 : >>> AlaTyrGlnGluGlyArgLeuGlnLysLeuLeuLysMetAsnGlyProGluAs : 156
||||||||||||||||||||||||||||||||||||||||||||| !!|||||
++AlaTyrGlnGluGlyArgLeuGlnLysLeuLeuLysMetAsnGlySerGluAs
458835 : ...agGCTTATCAGGAGGGCAGACTTCAAAAGCTACTAAAAATGAATGGCTCTGAGGA : 478505
157 : pLeuProLysSerTyrAspTyrAspLeuIleIleIleGlyGlyGlySerGlyGlyLeu : 175
|||||||:!!:!!|||||||||||||||||||||||||||||||||||||||||||||
pLeuProGluAlaTyrAspTyrAspLeuIleIleIleGlyGlyGlySerGlyGlyLeu
478506 : TCTCCCTGAGGCCTACGACTATGACCTCATCATCATCGGAGGGGGCTCAGGAGGACTG : 478562
176 : AlaAlaAlaLys >>>> Target Intron 3 >>>> GluAlaAlaGlnTyrGl : 185
|||||||||||| 1931 bp |||||||||::!|||!
AlaAlaAlaLys+- ++GluAlaAlaArgTyrAs
478563 : GCAGCCGCCAAGgc.........................agGAGGCAGCCAGATATGA : 480523
186 : yLysLysValMetValLeuAspPheValThrProThrProLeuGlyThrArgTrp{G} : 204
!||||||:!!||||||||||||||||||||||||||||||! !||||||||||||{|}
pLysLysIleMetValLeuAspPheValThrProThrProHisGlyThrArgTrp{G}
480524 : CAAGAAGATAATGGTCCTGGATTTTGTCACTCCAACCCCTCATGGAACTAGATGG{G} : 480580
205 : >>>> Target Intron 4 >>>> {ly}LeuGlyGlyThrCysValAsnValG : 213
2022 bp {||}|||||||||||||||||||||||||
++ ++{ly}LeuGlyGlyThrCysValAsnValG
480581 : gt.........................ag{GT}CTTGGAGGAACATGTGTGAATGTGG : 482629
214 : lyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuGlnAs : 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
lyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuGlnAs
482630 : GTTGCATACCTAAAAAACTGATGCACCAAGCGGCTTTGTTAGGACAAGCCCTACAAGA : 482686
233 : pSerArgAsnTyrGlyTrpLysValGluGluThr{V} >>>> Target Intron : 244
|||||||||||||||||||!!...!||||||! !{|} 7471 bp
pSerArgAsnTyrGlyTrpAsnThrGluGluMet{V}++
482687 : CTCTCGCAACTATGGTTGGAACACCGAGGAGATG{G}gt................... : 482725
245 : 5 >>>> {al}LysHisAspTrpAspArgMetIleGluAlaValGlnAsnHisIleG : 260
{||}||||||||||||:!!!:!|||! !||||||||||||||||||||||
++{al}LysHisAspTrpAsnLysMetThrGluAlaValGlnAsnHisIleG
482726 : ......ag{TT}AAACATGACTGGAATAAAATGACAGAAGCCGTACAGAACCACATTG : 490241
261 : lySerLeuAsnTrpGlyTyrArgValAlaLeuArgGluLysLysValValTyrGluAs : 279
|||||||||||||||||||||||||||||||||||||||||||||||..!||||||||
lySerLeuAsnTrpGlyTyrArgValAlaLeuArgGluLysLysValThrTyrGluAs
490242 : GCTCTCTGAACTGGGGCTACCGGGTAGCTCTGCGGGAGAAGAAAGTCACCTATGAGAA : 490298
280 : nAlaTyrGlyGlnPheIleGlyProHisArgIleLys >>>> Target Intron : 292
||||!:!|||||||||:!:|||||||||||||||||| 361 bp
nAlaPheGlyGlnPheValGlyProHisArgIleLys++
490299 : TGCATTTGGGCAGTTTGTGGGTCCTCATAGGATTAAGgt................... : 490339
293 : 6 >>>> AlaThrAsnAsnLysGlyLysGluLysIleTyrSerAlaGluArgPheLe : 308
||||||||||||||||||||||||||||||||||||||||||||||||||
++AlaThrAsnAsnLysGlyLysGluLysIleTyrSerAlaGluArgPheLe
490340 : ......agGCAACAAATAACAAAGGCAAAGAAAAAATTTATTCAGCAGAGAGATTTCT : 490746
309 : uIleAlaThrGlyGluArgProArgTyrLeuGlyIleProGlyAspLysGluTyrCys : 327
|||||||||||||||||||||||||||||||! !||||||||||||!:!|||||||||
uIleAlaThrGlyGluArgProArgTyrLeuAspIleProGlyAspArgGluTyrCys
490747 : CATTGCTACTGGTGAGAGGCCACGTTACTTGGACATCCCTGGTGACAGAGAGTACTGC : 490803
328 : IleSer{Se} >>>> Target Intron 7 >>>> {r}AspAspLeuPheSerL : 336
||||||{||} 1314 bp {|}||||||||||||||||
IleSer{Se}++ ++{r}AspAspLeuPheSerL
490804 : ATTAGC{AG}gt.........................ag{T}GATGATCTTTTCTCCT : 492144
337 : euProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeuGluCy : 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
euProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeuGluCy
492145 : TACCTTATTGCCCGGGTAAGACGCTGGTGGTTGGAGCATCTTATGTTGCCCTTGAATG : 492201
356 : sAlaGlyPheLeuAlaGlyIleGlyLeuAspValThrValMetValArgSerIleLeu : 374
|||||||||||||!.!||||||||||||||||||||||||||||||||||||||||||
sAlaGlyPheLeuValGlyIleGlyLeuAspValThrValMetValArgSerIleLeu
492202 : TGCTGGATTTCTTGTTGGCATTGGCTTAGATGTTACTGTTATGGTACGATCCATTCTC : 492258
375 : LeuArgGlyPheAspGlnAspMetAlaAsnLysIleGlyGluHisMetGluGluHisG : 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LeuArgGlyPheAspGlnAspMetAlaAsnLysIleGlyGluHisMetGluGluHisG
492259 : CTTAGAGGATTTGACCAGGACATGGCCAACAAAATTGGGGAACATATGGAAGAACATG : 492318
395 : lyIleLysPheIleArgGlnPheValProIleLys >>>> Target Intron 8 : 406
||:!!|||||||||!:!|||||||||||||||||| 5361 bp
lyValLysPheIleLysGlnPheValProIleLys++
492319 : GTGTCAAGTTTATAAAACAGTTTGTACCAATAAAAgt..................... : 492356
407 : >>>> ValGluGlnIleGluAlaGlyThrProGlyArgLeuArgValValAlaGlnS : 423
||||||||||||||||||||||||||||||||||||||||||:!!|||:!!|
++ValGluGlnIleGluAlaGlyThrProGlyArgLeuArgValIleAlaLysS
492357 : ....agGTTGAACAAATTGAAGCAGGGACACCAGGCCGACTCAGGGTGATAGCTAAGT : 497766
424 : erThrAsnSerGluGluIleIleGluGlyGluTyrAsnThr >>>> Target Int : 437
|||||!:!!!!!!:||||||||||||||||||||||||||| 553 b
erThrSerCysAspGluIleIleGluGlyGluTyrAsnThr++
497767 : CCACCAGTTGTGATGAAATCATTGAAGGAGAGTATAATACGgt............... : 497810
438 : ron 9 >>>> ValMetLeuAlaIleGlyArgAspAlaCysThrArgLysIleGlyL : 452
p |||:!!||||||||||||||||||||||||||||||||||||||||
++ValLeuLeuAlaIleGlyArgAspAlaCysThrArgLysIleGlyL
497811 : ..........agGTATTGCTGGCAATAGGAAGAGATGCTTGCACAAGAAAAATTGGCT : 498406
453 : euGluThrValGlyValLysIleAsnGlu{Ly} >>>> Target Intron 10 > : 462
|||||||||||||||||||||||||||||{||} 2000 bp
euGluThrValGlyValLysIleAsnGlu{Ly}++
498407 : TAGAAACCGTGGGGGTAAAGATAAATGAA{AA}gt....................... : 498440
463 : >>> {s}ThrGlyLysIleProValThrAspGluGluGlnThrAsnValProTyrIl : 479
{|}||||||||||||||||||||||||||||||||||||||||||||||||||
++{s}ThrGlyLysIleProValThrAspGluGluGlnThrAsnValProTyrIl
498441 : ...ag{G}ACTGGAAAAATACCTGTCACAGATGAAGAGCAGACCAATGTGCCTTACAT : 500487
480 : eTyrAlaIleGlyAspIleLeuGluAspLysValGluLeuThrProValAlaIleGln : 498
||||||||||||||||:!!||||||! |||:!!||||||||||||||||||||||||
eTyrAlaIleGlyAspValLeuGluGlyLysLeuGluLeuThrProValAlaIleGln
500488 : CTATGCCATTGGCGATGTATTAGAGGGGAAGCTGGAGCTCACCCCAGTAGCAATCCAG : 500544
499 : AlaGlyArgLeuLeuAlaGlnArgLeuTyrAlaGlySerThrValLys >>>> Tar : 515
|||||||||||||||||||||||||||||||||||||||!.!||||||
AlaGlyArgLeuLeuAlaGlnArgLeuTyrAlaGlySerAsnValLys++
500545 : GCAGGAAGATTGCTGGCTCAGAGGCTTTATGCTGGCTCCAATGTGAAGgt........ : 500597
516 : get Intron 11 >>>> CysAspTyrGluAsnValProThrThrValPheThrPr : 527
7294 bp ||||||||||||||||||||||||||||||||||||||
++CysAspTyrGluAsnValProThrThrValPheThrPr
500598 : ..................agTGTGACTATGAAAATGTTCCAACAACTGTGTTTACTCC : 507925
528 : oLeuGluTyrGlyAlaCysGlyLeuSerGluGluLysAlaValGluLysPheGlyGlu : 546
||||||||||||||||||||||||||||||||||||||||||||||! !|||||||||
oLeuGluTyrGlyAlaCysGlyLeuSerGluGluLysAlaValGluThrPheGlyGlu
507926 : TTTGGAATATGGTGCCTGTGGTCTTTCTGAGGAGAAAGCTGTGGAGACGTTTGGGGAA : 507982
547 : GluAsnIleGlu >>>> Target Intron 12 >>>> ValTyrHisSerTyrP : 556
|||||||||||| 2231 bp ||||||||||||||||
GluAsnIleGlu++ ++ValTyrHisSerTyrP
507983 : GAAAATATTGAGgt..........................agGTTTACCATAGTTACT : 510243
557 : heTrpProLeuGluTrpThrIleProSerArgAspAsnAsnLysCysTyrAlaLysIl : 575
|||||||||||||||||||||||||||||||||||!:!||||||||||||||||||:!
heTrpProLeuGluTrpThrIleProSerArgAspSerAsnLysCysTyrAlaLysVa
510244 : TCTGGCCGTTGGAGTGGACGATTCCATCAAGAGATAGCAACAAATGTTATGCAAAAGT : 510300
576 : eIleCysAsnThrLysAspAsn >>>> Target Intron 13 >>>> GluArg : 584
!|||||||||! !||||||||| 3562 bp ||||||
lIleCysAsnIleLysAspAsn++ ++GluArg
510301 : AATCTGTAATATCAAAGACAATgt..........................agGAACGT : 513889
585 : ValValGlyPheHisValLeuGlyProAsnAlaGlyGluValThrGlnGlyPheAlaA : 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ValValGlyPheHisValLeuGlyProAsnAlaGlyGluValThrGlnGlyPheAlaA
513890 : GTTGTGGGCTTCCACGTACTGGGTCCAAATGCTGGAGAAGTGACACAAGGCTTTGCAG : 513949
605 : laAlaLeuLysCysGlyLeuThrLysLysGlnLeuAspSerThrIleGlyIleHisPr : 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
laAlaLeuLysCysGlyLeuThrLysLysGlnLeuAspSerThrIleGlyIleHisPr
513950 : CTGCCCTTAAGTGTGGACTGACCAAAAAGCAGCTGGACAGTACCATTGGAATCCACCC : 514006
624 : oValCysAlaGlu >>>> Target Intron 14 >>>> ValPheThrThrLeu : 632
||||||||||||| 8900 bp |||||||||||||||
oValCysAlaGlu++ ++ValPheThrThrLeu
514007 : CGTCTGTGCAGAGgt..........................agGTATTCACGACTCTG : 522933
633 : SerValThrLysArgSerGlyAlaSerIleLeuGlnAlaGlyCysUnkGly : 649
|||||||||||||||||||||!.!||||||||||||||||||||| |||
SerValThrLysArgSerGlyGlySerIleLeuGlnAlaGlyCys***Gly
522934 : TCGGTGACCAAGCGCTCTGGGGGAAGCATCCTCCAGGCCGGCTGCTGAGGT : 522986
vulgar: SPP00000129_2.0 41 649 . gi|472268805|gb|KB715852.1| 432657 522986 + 2642 M 41 123 G 1 0 M 18 54 S 0 1 5 0 2 I 0 25882 3 0 2 S 1 2 M 36 108 5 0 2 I 0 19618 3 0 2 M 41 123 5 0 2 I 0 1927 3 0 2 M 24 72 S 0 1 5 0 2 I 0 2018 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 7467 3 0 2 S 1 2 M 47 141 5 0 2 I 0 357 3 0 2 M 38 114 S 0 2 5 0 2 I 0 1310 3 0 2 S 1 1 M 75 225 5 0 2 I 0 5357 3 0 2 M 31 93 5 0 2 I 0 549 3 0 2 M 25 75 S 0 2 5 0 2 I 0 1996 3 0 2 S 1 1 M 52 156 5 0 2 I 0 7290 3 0 2 M 36 108 5 0 2 I 0 2227 3 0 2 M 32 96 5 0 2 I 0 3558 3 0 2 M 45 135 5 0 2 I 0 8896 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local gene 432658 522986 2642 + . gene_id 1 ; sequence SPP00000129_2.0 ; gene_orientation +
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 432658 432835 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 432658 432835 . + . insertions 0 ; deletions 1
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 432836 432837 . + . intron_id 1 ; splice_site "CT"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 432836 458721 . + . intron_id 1
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 458720 458721 . + . intron_id 0 ; splice_site "AG"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 458722 458831 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 458722 458831 . + . insertions 0 ; deletions 0
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 458832 458833 . + . intron_id 2 ; splice_site "GT"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 458832 478453 . + . intron_id 2
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 478452 478453 . + . intron_id 1 ; splice_site "AG"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 478454 478576 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 478454 478576 . + . insertions 0 ; deletions 0
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 478577 478578 . + . intron_id 3 ; splice_site "GC"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 478577 480507 . + . intron_id 3
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 480506 480507 . + . intron_id 2 ; splice_site "AG"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 480508 480580 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 480508 480580 . + . insertions 0 ; deletions 0
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 480581 480582 . + . intron_id 4 ; splice_site "GT"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 480581 482602 . + . intron_id 4
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 482601 482602 . + . intron_id 3 ; splice_site "AG"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 482603 482722 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 482603 482722 . + . insertions 0 ; deletions 0
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 482723 482724 . + . intron_id 5 ; splice_site "GT"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 482723 490193 . + . intron_id 5
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 490192 490193 . + . intron_id 4 ; splice_site "AG"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 490194 490336 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 490194 490336 . + . insertions 0 ; deletions 0
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 490337 490338 . + . intron_id 6 ; splice_site "GT"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 490337 490697 . + . intron_id 6
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 490696 490697 . + . intron_id 5 ; splice_site "AG"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 490698 490813 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 490698 490813 . + . insertions 0 ; deletions 0
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 490814 490815 . + . intron_id 7 ; splice_site "GT"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 490814 492127 . + . intron_id 7
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 492126 492127 . + . intron_id 6 ; splice_site "AG"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 492128 492353 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 492128 492353 . + . insertions 0 ; deletions 0
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 492354 492355 . + . intron_id 8 ; splice_site "GT"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 492354 497714 . + . intron_id 8
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 497713 497714 . + . intron_id 7 ; splice_site "AG"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 497715 497807 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 497715 497807 . + . insertions 0 ; deletions 0
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 497808 497809 . + . intron_id 9 ; splice_site "GT"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 497808 498360 . + . intron_id 9
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 498359 498360 . + . intron_id 8 ; splice_site "AG"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 498361 498437 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 498361 498437 . + . insertions 0 ; deletions 0
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 498438 498439 . + . intron_id 10 ; splice_site "GT"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 498438 500437 . + . intron_id 10
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 500436 500437 . + . intron_id 9 ; splice_site "AG"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 500438 500594 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 500438 500594 . + . insertions 0 ; deletions 0
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 500595 500596 . + . intron_id 11 ; splice_site "GT"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 500595 507888 . + . intron_id 11
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 507887 507888 . + . intron_id 10 ; splice_site "AG"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 507889 507996 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 507889 507996 . + . insertions 0 ; deletions 0
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 507997 507998 . + . intron_id 12 ; splice_site "GT"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 507997 510227 . + . intron_id 12
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 510226 510227 . + . intron_id 11 ; splice_site "AG"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 510228 510323 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 510228 510323 . + . insertions 0 ; deletions 0
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 510324 510325 . + . intron_id 13 ; splice_site "GT"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 510324 513885 . + . intron_id 13
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 513884 513885 . + . intron_id 12 ; splice_site "AG"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 513886 514020 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 513886 514020 . + . insertions 0 ; deletions 0
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice5 514021 514022 . + . intron_id 14 ; splice_site "GT"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local intron 514021 522920 . + . intron_id 14
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local splice3 522919 522920 . + . intron_id 13 ; splice_site "AG"
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local cds 522921 522986 . + .
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local exon 522921 522986 . + . insertions 0 ; deletions 0
gi|472268805|gb|KB715852.1| exonerate:protein2genome:local similarity 432658 522986 2642 + . alignment_id 1 ; Query SPP00000129_2.0 ; Align 432658 42 123 ; Align 432781 84 54 ; Align 458724 103 108 ; Align 478454 139 123 ; Align 480508 180 72 ; Align 482605 205 117 ; Align 490196 245 141 ; Align 490698 292 114 ; Align 492129 331 225 ; Align 497715 406 93 ; Align 498361 437 75 ; Align 500439 463 156 ; Align 507889 515 108 ; Align 510228 551 96 ; Align 513886 583 135 ; Align 522921 628 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis