Command line: [exonerate -m p2g --showtargetgff -q ./SelW1_walrus.fa -t SelW1_walrus.carpeta/genomic.fa] Hostname: [ws101068] C4 Alignment: ------------ Query: SPP00000124_2.0 # Protein # Selenoprotein W1 (SelW1) # Walrus (Odobenus rosmarus) Target: gi|472264263|gb|KB720394.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold05689, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 350 Query range: 0 -> 87 Target range: 46189 -> 44094 1 : MetAlaLeuAlaIleArgValValTyr{Cy} >>>> Target Intron 1 >>>> : 10 |||||||||||||||||||||||||||{||} 1562 bp MetAlaLeuAlaIleArgValValTyr{Cy}++ -- 46189 : ATGGCCCTCGCCATCCGAGTCGTTTAT{TG}gt.........................gt : 44600 11 : {s}GlyAlaUnkGlyTyrLysSerLysTyrLeuGlnLeuLysLysLysLeuGluAspGlu : 29 {|} ... |||:::||||||||||||||||||||||||||||||||| {s}ValThrProThrProProSerGlnTyrLeuGlnLeuLysLysLysLeuGluAspGlu 44599 : {T}GTGACCCCCACACCTCCTTCCCAGTATCTTCAGCTCAAGAAGAAGTTAGAAGATGAG : 44543 30 : PheProGlyCysLeuAspIle >>>> Target Intron 2 >>>> CysGlyGluG : 40 ||||||||||||||||||||| 184 bp |||||||||| PheProGlyCysLeuAspIle++ ++CysGlyGluG 44542 : TTCCCCGGATGCCTGGACATCgt.........................agTGCGGCGAGG : 44326 41 : lyThrProGlnAlaThrGlyPhePheGluValMetValAlaGlyLysLeuValHisSerL : 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| lyThrProGlnAlaThrGlyPhePheGluValMetValAlaGlyLysLeuValHisSerL 44325 : GGACTCCCCAGGCCACCGGCTTCTTTGAAGTGATGGTAGCCGGGAAGTTGGTTCACTCCA : 44266 61 : ysLys >>>> Target Intron 3 >>>> ArgGlyAspGlyTyrValAspThrGl : 70 ||||| 88 bp |||||||||||||||||||||||||| ysLys++ ++ArgGlyAspGlyTyrValAspThrGl 44265 : AGAAGgt.........................agAGAGGTGATGGCTACGTGGACACAGA : 44148 71 : uSerLysPheLeuLysLeuValAlaAlaIleLysAlaAlaLeuAlaGlnGly : 87 |||||||||||||||||||||||||||||||||||||||||||||||||||| uSerLysPheLeuLysLeuValAlaAlaIleLysAlaAlaLeuAlaGlnGly 44147 : GAGCAAGTTTCTGAAGCTGGTGGCCGCCATCAAGGCCGCCTTGGCTCAGGGC : 44095 vulgar: SPP00000124_2.0 0 87 . gi|472264263|gb|KB720394.1| 46189 44094 - 350 M 9 27 S 0 2 5 0 2 I 0 1558 3 0 2 S 1 1 M 26 78 5 0 2 I 0 180 3 0 2 M 25 75 5 0 2 I 0 84 3 0 2 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2013-11-19 ##type DNA # # # seqname source feature start end score strand frame attributes # gi|472264263|gb|KB720394.1| exonerate:protein2genome:local gene 44095 46189 350 - . gene_id 1 ; sequence SPP00000124_2.0 ; gene_orientation + gi|472264263|gb|KB720394.1| exonerate:protein2genome:local cds 46161 46189 . - . gi|472264263|gb|KB720394.1| exonerate:protein2genome:local exon 46161 46189 . - . insertions 0 ; deletions 0 gi|472264263|gb|KB720394.1| exonerate:protein2genome:local splice5 46159 46160 . - . intron_id 1 ; splice_site "GT" gi|472264263|gb|KB720394.1| exonerate:protein2genome:local intron 44599 46160 . - . intron_id 1 gi|472264263|gb|KB720394.1| exonerate:protein2genome:local splice3 44599 44600 . - . intron_id 0 ; splice_site "GT" gi|472264263|gb|KB720394.1| exonerate:protein2genome:local cds 44520 44598 . - . gi|472264263|gb|KB720394.1| exonerate:protein2genome:local exon 44520 44598 . - . insertions 0 ; deletions 0 gi|472264263|gb|KB720394.1| exonerate:protein2genome:local splice5 44518 44519 . - . intron_id 2 ; splice_site "GT" gi|472264263|gb|KB720394.1| exonerate:protein2genome:local intron 44336 44519 . - . intron_id 2 gi|472264263|gb|KB720394.1| exonerate:protein2genome:local splice3 44336 44337 . - . intron_id 1 ; splice_site "AG" gi|472264263|gb|KB720394.1| exonerate:protein2genome:local cds 44261 44335 . - . gi|472264263|gb|KB720394.1| exonerate:protein2genome:local exon 44261 44335 . - . insertions 0 ; deletions 0 gi|472264263|gb|KB720394.1| exonerate:protein2genome:local splice5 44259 44260 . - . intron_id 3 ; splice_site "GT" gi|472264263|gb|KB720394.1| exonerate:protein2genome:local intron 44173 44260 . - . intron_id 3 gi|472264263|gb|KB720394.1| exonerate:protein2genome:local splice3 44173 44174 . - . intron_id 2 ; splice_site "AG" gi|472264263|gb|KB720394.1| exonerate:protein2genome:local cds 44095 44172 . - . gi|472264263|gb|KB720394.1| exonerate:protein2genome:local exon 44095 44172 . - . insertions 0 ; deletions 0 gi|472264263|gb|KB720394.1| exonerate:protein2genome:local similarity 44095 46189 350 - . alignment_id 1 ; Query SPP00000124_2.0 ; Align 46190 1 27 ; Align 44598 11 78 ; Align 44336 37 75 ; Align 44173 62 78 # --- END OF GFF DUMP --- # -- completed exonerate analysis