Command line: [exonerate -m p2g --showtargetgff -q ./SelW1_walrus.fa -t SelW1_walrus.carpeta/genomic.fa]
Hostname: [ws101068]

C4 Alignment:
------------
         Query: SPP00000124_2.0 # Protein # Selenoprotein W1 (SelW1) # Walrus (Odobenus rosmarus)
        Target: gi|472264263|gb|KB720394.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold05689, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 350
   Query range: 0 -> 87
  Target range: 46189 -> 44094

     1 : MetAlaLeuAlaIleArgValValTyr{Cy}  >>>> Target Intron 1 >>>>   :    10
         |||||||||||||||||||||||||||{||}           1562 bp           
         MetAlaLeuAlaIleArgValValTyr{Cy}++                         --
 46189 : ATGGCCCTCGCCATCCGAGTCGTTTAT{TG}gt.........................gt : 44600

    11 : {s}GlyAlaUnkGlyTyrLysSerLysTyrLeuGlnLeuLysLysLysLeuGluAspGlu :    29
         {|}   ...            |||:::|||||||||||||||||||||||||||||||||
         {s}ValThrProThrProProSerGlnTyrLeuGlnLeuLysLysLysLeuGluAspGlu
 44599 : {T}GTGACCCCCACACCTCCTTCCCAGTATCTTCAGCTCAAGAAGAAGTTAGAAGATGAG : 44543

    30 : PheProGlyCysLeuAspIle  >>>> Target Intron 2 >>>>  CysGlyGluG :    40
         |||||||||||||||||||||            184 bp           ||||||||||
         PheProGlyCysLeuAspIle++                         ++CysGlyGluG
 44542 : TTCCCCGGATGCCTGGACATCgt.........................agTGCGGCGAGG : 44326

    41 : lyThrProGlnAlaThrGlyPhePheGluValMetValAlaGlyLysLeuValHisSerL :    60
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         lyThrProGlnAlaThrGlyPhePheGluValMetValAlaGlyLysLeuValHisSerL
 44325 : GGACTCCCCAGGCCACCGGCTTCTTTGAAGTGATGGTAGCCGGGAAGTTGGTTCACTCCA : 44266

    61 : ysLys  >>>> Target Intron 3 >>>>  ArgGlyAspGlyTyrValAspThrGl :    70
         |||||            88 bp            ||||||||||||||||||||||||||
         ysLys++                         ++ArgGlyAspGlyTyrValAspThrGl
 44265 : AGAAGgt.........................agAGAGGTGATGGCTACGTGGACACAGA : 44148

    71 : uSerLysPheLeuLysLeuValAlaAlaIleLysAlaAlaLeuAlaGlnGly :    87
         ||||||||||||||||||||||||||||||||||||||||||||||||||||
         uSerLysPheLeuLysLeuValAlaAlaIleLysAlaAlaLeuAlaGlnGly
 44147 : GAGCAAGTTTCTGAAGCTGGTGGCCGCCATCAAGGCCGCCTTGGCTCAGGGC : 44095

vulgar: SPP00000124_2.0 0 87 . gi|472264263|gb|KB720394.1| 46189 44094 - 350 M 9 27 S 0 2 5 0 2 I 0 1558 3 0 2 S 1 1 M 26 78 5 0 2 I 0 180 3 0 2 M 25 75 5 0 2 I 0 84 3 0 2 M 26 78
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	gene	44095	46189	350	-	.	gene_id 1 ; sequence SPP00000124_2.0 ; gene_orientation +
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	cds	46161	46189	.	-	.	
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	exon	46161	46189	.	-	.	insertions 0 ; deletions 0
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	splice5	46159	46160	.	-	.	intron_id 1 ; splice_site "GT"
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	intron	44599	46160	.	-	.	intron_id 1
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	splice3	44599	44600	.	-	.	intron_id 0 ; splice_site "GT"
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	cds	44520	44598	.	-	.	
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	exon	44520	44598	.	-	.	insertions 0 ; deletions 0
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	splice5	44518	44519	.	-	.	intron_id 2 ; splice_site "GT"
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	intron	44336	44519	.	-	.	intron_id 2
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	splice3	44336	44337	.	-	.	intron_id 1 ; splice_site "AG"
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	cds	44261	44335	.	-	.	
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	exon	44261	44335	.	-	.	insertions 0 ; deletions 0
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	splice5	44259	44260	.	-	.	intron_id 3 ; splice_site "GT"
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	intron	44173	44260	.	-	.	intron_id 3
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	splice3	44173	44174	.	-	.	intron_id 2 ; splice_site "AG"
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	cds	44095	44172	.	-	.	
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	exon	44095	44172	.	-	.	insertions 0 ; deletions 0
gi|472264263|gb|KB720394.1|	exonerate:protein2genome:local	similarity	44095	46189	350	-	.	alignment_id 1 ; Query SPP00000124_2.0 ; Align 46190 1 27 ; Align 44598 11 78 ; Align 44336 37 75 ; Align 44173 62 78
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis