Command line: [exonerate -m p2g --showtargetgff -q ./SelV_walrus.fa -t SelV_walrus.carpeta/genomic.fa]
Hostname: [ws101086]
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Walrus (Odobenus rosmarus)
Target: gi|471701120|gb|APMU01161634.1| Leptonychotes weddellii contig161634, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 1513
Query range: 0 -> 394
Target range: 3441 -> 2175
1 : MetAsnAsnGlnAlaArgAlaProThrProSerProAlaGlnMetSerThrSerValArgAl : 21
||||||||||||||||||||| ||||||||||||:::||||||||||||||||||||
MetAsnAsnGlnAlaArgAla------ProSerProAlaArgMetSerThrSerValArgAl
3441 : ATGAACAACCAGGCGAGGGCC------CCTTCCCCGGCCCGGATGTCGACCTCGGTCCGGGC : 3387
22 : aSerThrProValArgAlaSerThrSerAlaArgThrProLysProIleGlnIleLeuThrP : 42
|||||||||| |||...|||||||||||||||||||||||| :::||||||||||||
aSerThrProGlyArgThrSerThrSerAlaArgThrProLysAlaValGlnIleLeuThrA
3386 : TTCAACCCCAGGCAGGACCTCGACTTCGGCCCGGACCCCGAAAGCCGTCCAGATCCTGACCC : 3324
43 : roAlaArgAsnLeuThrProValProThrArgAlaTrpThrProThrProValGlnAlaPro : 62
...|||... ||||||||||||||||||||||||||||||||||||||||||||||||
rgThrArgThrProThrProValProThrArgAlaTrpThrProThrProValGlnAlaPro
3323 : GCACCCGGACCCCGACTCCCGTCCCCACCCGGGCCTGGACCCCGACTCCCGTCCAGGCCCCG : 3264
63 : AlaSerAlaTrpThrProAlaProValGln >>>> Target Intron 1 >>>> Thr : 73
|||||||||||||||...||||||::: 36 bp |||
IleSerAlaTrpThrProThrProValArg+- ++Thr
3263 : ATCTCGGCCTGGACCCCGACTCCCGTCCGGgc.........................agACC : 3195
74 : ProAlaArgThrLeuAlaProValProThrLeuValArgThrProThrArgIleGlnThrLe : 94
|||||||||||||||||||||||||||||||||...||||||||||||||||||||||||||
ProAlaArgThrLeuAlaProValProThrLeuAlaArgThrProThrArgIleGlnThrLe
3194 : CCGGCGCGAACCCTGGCTCCCGTCCCGACCCTGGCCCGGACCCCGACTCGCATCCAGACCCT : 3132
95 : uThrSerAlaArgThrProThrProGlyGlnThrArgAlaSerAlaArgThrProThrProV : 115
|||||||||||||||||||||||||...||||||||||||||||||||||||||||||||||
uThrSerAlaArgThrProThrProAlaGlnThrArgAlaSerAlaArgThrProThrProV
3131 : GACCTCCGCCCGGACCCCGACTCCTGCCCAGACCCGGGCCTCAGCTCGGACCCCCACTCCCG : 3069
116 : alGlnThrProAlaLeuAlaTrpThrArgThrProValGlnThrLeuAlaArgThrProAla : 135
|||||||||||||| ... ||| ... ... ... ||| ||| ...
alGlnThrProAlaTrpThrProThrProValGlnThrProAlaSerAlaTrpThrHisThr
3068 : TCCAGACTCCGGCCTGGACCCCCACTCCTGTCCAGACCCCAGCCTCGGCCTGGACCCACACT : 3009
136 : ProValGlnThrLeuAlaArgThrProThrProIle<-><-><-><->ArgThrProThrPr : 152
|||:::|||||| ||||||...|||...|||::: ||||||||||||||
ProIleGlnThrProAlaArgAlaProAlaProValArgThrLeuAlaArgThrProThrPr
3008 : CCCATCCAGACCCCGGCCCGAGCCCCGGCTCCCGTCCGGACCCTGGCCCGGACCCCGACTCC : 2946
153 : oValGlnThrGlnAlaLeuAlaTrpThrProAsnProSerGlnThrLeuSerArgThrProA : 173
|||||||||||||||||||||||||||||||||||||||||||||||||:::||| |
oValGlnThrGlnAlaLeuAlaTrpThrProAsnProSerGlnThrLeuAlaArgIleLeuA
2945 : TGTCCAGACCCAGGCCTTGGCCTGGACCCCGAATCCCAGCCAGACCCTGGCCCGGATCCTGA : 2883
174 : snProValGlnMetLeuThrProAlaGlnThrArgThrProIleProThrProThrSerAla : 193
|||||||||||||||||||||||||||||||| ||||||||||||||||||...||||||
snProValGlnMetLeuThrProAlaGlnThrProThrProIleProThrProAlaSerAla
2882 : ATCCAGTCCAGATGCTGACCCCGGCCCAAACCCCGACTCCCATCCCGACCCCGGCCTCCGCC : 2823
194 : ArgSerLeuThrProValGln >>>> Target Intron 2 >>>> ThrProThrPro : 204
::: |||||||||||| 36 bp ||||||||||||
TrpThrProThrProValGln-- ++ThrProThrPro
2822 : TGGACCCCCACTCCCGTCCAGac.........................agACCCCAACCCCG : 2754
205 : ValTrpThrArgThrPro<-><-><-><->ThrArgIleArgThrProThrProAlaGlnMe : 221
|||||||||||||||||| |||||||||||||||||||||||||||:::||
ValTrpThrArgThrProValArgThrLeuThrArgIleArgThrProThrProAlaArgMe
2753 : GTCTGGACCCGCACTCCCGTCCGGACTCTGACCCGGATCCGGACCCCGACTCCTGCACGGAT : 2691
222 : tProThrArgValArgThrProIleProAlaArgMetProThrProIleTrpThrProProP : 242
| |||||||||:::|||||||||||||||||||||||||||||||||||| |||
tLeuThrArgValGlnThrProIleProAlaArgMetProThrProIleTrp------ProA
2690 : GCTGACCCGGGTCCAGACCCCTATTCCAGCCCGGATGCCTACTCCAATCTGG------CCCG : 2634
243 : roAlaProAlaProAlaProThrProValProSerGlnValGlyIleGluIleThrAlaAla : 262
||||||||||||||||||||||||||||||:::||||||||||||||||||||||||
laProProAlaProAlaProThrProValProSerArgValGlyIleGluIleThrAlaAla
2633 : CGCCTCCGGCCCCGGCCCCAACTCCAGTTCCATCCCGGGTTGGGATTGAGATCACAGCCGCG : 2574
263 : ValProAlaSerGluSerPheProAspSerValValProLeuAspProHisArgGluProAl : 283
|||||||||||||||||||||||||||||||||:::||||||||||||||| ||||||||
ValProAlaSerGluSerPheProAspSerValLeuProLeuAspProHisProGluProAl
2573 : GTCCCTGCCTCGGAATCCTTCCCGGACTCAGTCCTGCCTTTGGATCCGCACCCAGAACCCGC : 2511
284 : aLeuGluGluProAlaLeuSerProAsnLysAspLeuSerProLysProSerValLysHisP : 304
|||||||||| ||||||||||||:::||||||||||||||||||||||||||||||||||
aLeuGluGluAlaAlaLeuSerProAspLysAspLeuSerProLysProSerValLysHisP
2510 : TTTGGAGGAGGCCGCTTTGTCGCCCGACAAGGATCTTTCGCCCAAGCCGAGCGTGAAGCACT : 2448
305 : heProSerValAlaSerGlyPheGlySerLysArgGluSerIleLeuValHisThrProSer : 324
|||||||| |||||||||||||||||||||:::||||||:::||||||||||||||||||
heProSerAspAlaSerGlyPheGlySerLysGlnGluSerValLeuValHisThrProSer
2447 : TCCCATCCGACGCCAGTGGATTCGGGTCCAAGCAAGAGTCCGTTCTTGTCCACACTCCATCG : 2388
325 : AlaThrAspPheLeuGlyLeuThrLeuGlySerThrSerLysAlaAspSerSerAlaThrLy : 345
|||||||||||||||||||||||||||||||||||||||:::||||||||||||||||||||
AlaThrAspPheLeuGlyLeuThrLeuGlySerThrSerArgAlaAspSerSerAlaThrLy
2387 : GCCACTGATTTCCTGGGGCTCACCCTTGGCTCCACCTCGAGGGCAGACTCCTCGGCCACGAA : 2325
346 : sLeuThrAspAlaThrProGluPheValArgValProIleLeuGlyProAspProPheAlaP : 366
||||||||||:::||||||||||||||| |||||||||||||||||||||||||||||||
sLeuThrAspSerThrProGluPheValProValProIleLeuGlyProAspProPheAlaP
2324 : GTTGACAGATTCCACTCCCGAGTTTGTTCCGGTGCCCATCCTGGGTCCCGACCCGTTCGCCC : 2262
367 : roThrLeuProGluSerThrAsnThrPheAlaProThrIleGluSerPheProMetAspSer : 386
|||||||||||||||||||||||||||||...||||||||||||||||||||||||||||||
roThrLeuProGluSerThrAsnThrPheThrProThrIleGluSerPheProMetAspSer
2261 : CCACCTTACCTGAGTCCACCAACACTTTCACTCCCACCATTGAGAGCTTCCCGATGGACAGC : 2202
387 : LysIleValIleArgValIleTyr : 394
||||||||||||||||||||||||
LysIleValIleArgValIleTyr
2201 : AAGATCGTGATTCGAGTGATCTAC : 2176
vulgar: SPP00000123_2.0 0 394 . gi|471701120|gb|APMU01161634.1| 3441 2175 - 1513 M 7 21 G 2 0 M 63 189 5 0 2 I 0 32 3 0 2 M 75 225 G 0 12 M 53 159 5 0 2 I 0 32 3 0 2 M 10 30 G 0 12 M 28 84 G 2 0 M 154 462
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local gene 2176 3441 1513 - . gene_id 1 ; sequence SPP00000123_2.0 ; gene_orientation +
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 3232 3441 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 3232 3441 . - . insertions 0 ; deletions 2
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local splice5 3230 3231 . - . intron_id 1 ; splice_site "GC"
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local intron 3196 3231 . - . intron_id 1
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local splice3 3196 3197 . - . intron_id 0 ; splice_site "AG"
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 2800 3195 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 2800 3195 . - . insertions 12 ; deletions 0
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local splice5 2798 2799 . - . intron_id 2 ; splice_site "AC"
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local intron 2764 2799 . - . intron_id 2
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local splice3 2764 2765 . - . intron_id 1 ; splice_site "AG"
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 2176 2763 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 2176 2763 . - . insertions 12 ; deletions 2
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local similarity 2176 3441 1513 - . alignment_id 1 ; Query SPP00000123_2.0 ; Align 3442 1 21 ; Align 3421 10 189 ; Align 3196 73 225 ; Align 2959 148 159 ; Align 2764 201 30 ; Align 2722 211 84 ; Align 2638 241 462
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Walrus (Odobenus rosmarus)
Target: gi|471701120|gb|APMU01161634.1| Leptonychotes weddellii contig161634, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 343
Query range: 25 -> 252
Target range: 3504 -> 2841
26 : ArgAlaSerThrSerAlaArgThrProLysProIleGlnIleLeuThrProAlaArgAsnLe : 46
|||:::::: ... |||||| ||| |||
ArgSerThrGlyGlnAspProThrProHisProArgTyrProGlyGlyProProAlaProTh
3504 : AGGAGCACCGGGCAGGATCCCACCCCCCACCCCCGTTACCCCGGGGGGCCCCCTGCCCCCAC : 3444
47 : uThrProValProThrArgAlaTrpThrProThrProValGlnAlaProAlaSerAlaTrpT : 67
...|||||| :::|||... :::...... ... ||| |
rMetAsnAsnGlnAlaArgAlaProSerProAlaArgMetSerThrSerValArgAlaSerT
3443 : CATGAACAACCAGGCGAGGGCCCCTTCCCCGGCCCGGATGTCGACCTCGGTCCGGGCTTCAA : 3381
68 : hrProAlaProValGlnThrProAlaArgThrLeuAlaProValProThrLeuValArgThr : 87
|||||... ......||| ||||||||| ||| |||...||||||
hrProGlyArgThrSerThrSerAlaArgThrProLysAlaValGlnIleLeuThrArgThr
3380 : CCCCAGGCAGGACCTCGACTTCGGCCCGGACCCCGAAAGCCGTCCAGATCCTGACCCGCACC : 3321
88 : ProThrArgIleGlnThrLeuThrSerAlaArgThrProThrProGlyGlnThrArgAlaSe : 108
||| ... ||| ||| |||||||||||| |||... ||
ArgThrProThrProValProThrArgAlaTrpThrProThrProValGlnAlaProIleSe
3320 : CGGACCCCGACTCCCGTCCCCACCCGGGCCTGGACCCCGACTCCCGTCCAGGCCCCGATCTC : 3258
109 : rAlaArgThrProThrProValGlnThrProAlaLeuAlaTrpThrArgThrProValGlnT : 129
|||| |||||||||||||||:::...|||||| ||||||... |||||||||||||
rAlaTrpThrProThrProValArgAlaProAlaSerAlaTrpAlaProThrProValGlnT
3257 : GGCCTGGACCCCGACTCCCGTCCGGGCCCCAGCCTCAGCCTGGGCCCCCACTCCCGTCCAGA : 3195
130 : hrLeuAlaArgThrProAlaProValGlnThrLeuAlaArgThrProThrProIleArgThr : 149
|| ||||||||| ||||||||| ||||||||||||||||||||| |||:::|||
hrProAlaArgThrLeuAlaProValProThrLeuAlaArgThrProThrArgIleGlnThr
3194 : CCCCGGCGCGAACCCTGGCTCCCGTCCCGACCCTGGCCCGGACCCCGACTCGCATCCAGACC : 3135
150 : ProThrProValGlnThrGlnAlaLeuAlaTrpThrProAsnProSerGlnThrLeuSerAr : 170
||| ...:::||| |||||| ::::::... :::||
LeuThrSerAlaArgThrPro------------ThrProAlaGlnThrArgAlaSerAlaAr
3134 : CTGACCTCCGCCCGGACCCCG------------ACTCCTGCCCAGACCCGGGCCTCAGCTCG : 3084
171 : gThrProAsnProValGlnMetLeuThrProAlaGlnThrArgThrProIleProThrProT : 191
|||||||...||||||||| ||||||||| ||| ||||||::: ||||||.
gThrProThrProValGln------ThrProAlaTrpThrProThrProValGlnThrProA
3083 : GACCCCCACTCCCGTCCAG------ACTCCGGCCTGGACCCCCACTCCTGTCCAGACCCCAG : 3027
192 : hrSerAlaArgSerLeuThrProValGlnThrProThrProValTrpThrArgThrProThr : 211
..|||||| ::: ||||||:::|||||||||... ... ... ... |||
laSerAlaTrpThrHisThrProIleGlnThrProAlaArgAlaProAlaProValArgThr
3026 : CCTCGGCCTGGACCCACACTCCCATCCAGACCCCGGCCCGAGCCCCGGCTCCCGTCCGGACC : 2967
212 : ArgIleArgThrProThrProAlaGlnMetProThrArgValArgThrProIleProAlaAr : 232
|||||||||||||||...||| ... ... |||||| |||:::::
LeuAlaArgThrProThrProValGlnThrGlnAlaLeuAlaTrpThrProAsnProSerGl
2966 : CTGGCCCGGACCCCGACTCCTGTCCAGACCCAGGCCTTGGCCTGGACCCCGAATCCCAGCCA : 2904
233 : gMetProThrProIleTrpThrProProProAlaProAlaProAlaProThrProValPro : 252
: ... ||| ...||| ...|||||| ||||||...|||
nThrLeuAlaArgIleLeuAsnProValGlnMetLeuThrProAlaGlnThrProThrPro
2903 : GACCCTGGCCCGGATCCTGAATCCAGTCCAGATGCTGACCCCGGCCCAAACCCCGACTCCC : 2842
vulgar: SPP00000123_2.0 25 252 . gi|471701120|gb|APMU01161634.1| 3504 2841 - 343 M 131 393 G 4 0 M 16 48 G 2 0 M 74 222
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local gene 2842 3504 343 - . gene_id 2 ; sequence SPP00000123_2.0 ; gene_orientation .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 2842 3504 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 2842 3504 . - . insertions 0 ; deletions 6
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local similarity 2842 3504 343 - . alignment_id 2 ; Query SPP00000123_2.0 ; Align 3505 26 393 ; Align 3112 161 48 ; Align 3064 179 222
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Walrus (Odobenus rosmarus)
Target: gi|471701120|gb|APMU01161634.1| Leptonychotes weddellii contig161634, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 330
Query range: 37 -> 254
Target range: 3432 -> 2799
38 : GlnIleLeuThrProAlaArgAsnLeuThrProValProThrArgAlaTrpThrProThrPr : 58
||| ...|||::: ... ...|||||| ||||||
GlnAlaArgAlaProSerProAlaArgMetSerThrSerValArgAlaSerThrProGlyAr
3432 : CAGGCGAGGGCCCCTTCCCCGGCCCGGATGTCGACCTCGGTCCGGGCTTCAACCCCAGGCAG : 3372
59 : oValGlnAlaProAlaSerAlaTrpThrProAlaProValGlnThrProAlaArgThrLeuA : 79
......... ||| ... ... ::: ||| ...|||||| .
gThrSerThrSerAlaArgThrProLysAlaValGlnIleLeuThrArgThrArgThrProT
3371 : GACCTCGACTTCGGCCCGGACCCCGAAAGCCGTCCAGATCCTGACCCGCACCCGGACCCCGA : 3309
80 : laProValProThrLeuValArgThrProThrArgIleGlnThrLeuThrSerAlaArgThr : 99
..|||||||||||| ... ||||||||| :::|||... |||||| |||
hrProValProThrArgAlaTrpThrProThrProValGlnAlaProIleSerAlaTrpThr
3308 : CTCCCGTCCCCACCCGGGCCTGGACCCCGACTCCCGTCCAGGCCCCGATCTCGGCCTGGACC : 3249
100 : ProThrProGlyGlnThrArgAlaSerAlaArgThrProThrProValGlnThrProAlaLe : 120
||||||||| :::... ||||||||| ...||||||||||||||||||||||||
ProThrProValArgAlaProAlaSerAlaTrpAlaProThrProValGlnThrProAlaAr
3248 : CCGACTCCCGTCCGGGCCCCAGCCTCAGCCTGGGCCCCCACTCCCGTCCAGACCCCGGCGCG : 3186
121 : uAlaTrpThrArgThrProValGlnThrLeuAlaArgThrProAlaProValGlnThrLeuA : 141
||| ...|||||| ||||||||||||||||||... :::|||||||||
g------ThrLeuAlaProValProThrLeuAlaArgThrProThrArgIleGlnThrLeu-
3185 : A------ACCCTGGCTCCCGTCCCGACCCTGGCCCGGACCCCGACTCGCATCCAGACCCTG- : 3129
142 : laArgThrProThrProIleArgThrProThrProValGlnThrGlnAlaLeuAlaTrpThr : 161
||| |||||||||||||||...||||||:::||| ||| |||
-----------ThrSerAlaArgThrProThrProAlaGlnThrArgAlaSerAlaArgThr
3128 : -----------ACCTCCGCCCGGACCCCGACTCCTGCCCAGACCCGGGCCTCAGCTCGGACC : 3081
162 : ProAsnProSerGlnThrLeuSerArgThrProAsnProValGlnMetLeuThrProAlaGl : 182
|||...||| |||||| ::: ||||||...||||||||| ... |||
ProThrProValGlnThrProAlaTrpThrProThrProValGlnThrProAlaSerAlaTr
3080 : CCCACTCCCGTCCAGACTCCGGCCTGGACCCCCACTCCTGTCCAGACCCCAGCCTCGGCCTG : 3018
183 : nThrArgThrProIleProThrProThrSerAlaArgSerLeuThrProValGlnThrProT : 203
|||...||||||||| ||||||... ||| ::: ... ... ... |
pThrHisThrProIleGlnThrProAlaArgAlaProAlaProValArgThrLeuAlaArgT
3017 : GACCCACACTCCCATCCAGACCCCGGCCCGAGCCCCGGCTCCCGTCCGGACCCTGGCCCGGA : 2955
204 : hrProValTrpThrArgThrProThrArgIleArgThrProThrProAlaGlnMetProThr : 223
|||||... ...:::||| ... ||||||...|||:::||| ...
hrProThrProValGlnThrGlnAlaLeuAlaTrpThrProAsnProSerGlnThrLeuAla
2954 : CCCCGACTCCTGTCCAGACCCAGGCCTTGGCCTGGACCCCGAATCCCAGCCAGACCCTGGCC : 2895
224 : ArgValArgThrProIleProAlaArgMetProThrProIleTrpThrProProProAlaPr : 244
|||::: ...|||::: |||... |||||| |||...||
ArgIleLeuAsnProValGlnMetLeuThrProAlaGlnThrProThrProIleProThrPr
2894 : CGGATCCTGAATCCAGTCCAGATGCTGACCCCGGCCCAAACCCCGACTCCCATCCCGACCCC : 2832
245 : oAlaProAlaProThrProValProSerGln : 254
|||| ||| ||||||...||| |||
oAlaSerAlaTrpThrProThrProValGln
2831 : GGCCTCCGCCTGGACCCCCACTCCCGTCCAG : 2800
vulgar: SPP00000123_2.0 37 254 . gi|471701120|gb|APMU01161634.1| 3432 2799 - 330 M 83 249 G 2 0 M 18 54 G 4 0 M 110 330
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local gene 2800 3432 330 - . gene_id 3 ; sequence SPP00000123_2.0 ; gene_orientation .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 2800 3432 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 2800 3432 . - . insertions 0 ; deletions 6
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local similarity 2800 3432 330 - . alignment_id 3 ; Query SPP00000123_2.0 ; Align 3433 38 249 ; Align 3184 123 54 ; Align 3130 145 330
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Walrus (Odobenus rosmarus)
Target: gi|471701120|gb|APMU01161634.1| Leptonychotes weddellii contig161634, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 280
Query range: 66 -> 255
Target range: 3483 -> 2868
67 : ThrProAlaProValGlnThrProAlaArgThrLeuAlaProValProThrLeuValArgTh : 87
|||||| ||| ... ::: ... ...|||..
ThrProHisProArgTyrProGlyGlyProProAlaProThrMetAsnAsnGlnAlaArgAl
3483 : ACCCCCCACCCCCGTTACCCCGGGGGGCCCCCTGCCCCCACCATGAACAACCAGGCGAGGGC : 3423
88 : rProThrArgIleGlnThrLeuThrSerAlaArgThrProThrProGlyGlnThrArgAlaS : 108
.|||::: ::: ||||||...|||... |||||||||:::||| ...|
aProSerProAlaArgMetSerThrSerValArgAlaSerThrProGlyArgThrSerThrS
3422 : CCCTTCCCCGGCCCGGATGTCGACCTCGGTCCGGGCTTCAACCCCAGGCAGGACCTCGACTT : 3360
109 : erAlaArgThrProThrProValGlnThrProAlaLeuAlaTrpThrArgThrProValGln : 128
|||||||||||||| |||||| ... ... ||| |||||||||
erAlaArgThrProLysAlaValGlnIleLeuThrArgThrArgThrProThrProValPro
3359 : CGGCCCGGACCCCGAAAGCCGTCCAGATCCTGACCCGCACCCGGACCCCGACTCCCGTCCCC : 3300
129 : ThrLeuAlaArgThrProAlaProValGlnThrLeuAlaArgThrProThrProIleArgTh : 149
||| ||| ||||||...||||||||| ...||| ||
ThrArgAlaTrpThrProThrProValGln------------AlaProIleSerAlaTrpTh
3299 : ACCCGGGCCTGGACCCCGACTCCCGTCCAG------------GCCCCGATCTCGGCCTGGAC : 3249
150 : rProThrProValGlnThrGlnAlaLeuAlaTrpThrProAsnProSerGlnThrLeuSerA : 170
|||||||||||||:::... ||| ||||||...|||...||| |||||| :::|
rProThrProValArgAlaProAlaSerAlaTrpAlaProThrProValGlnThrProAlaA
3248 : CCCGACTCCCGTCCGGGCCCCAGCCTCAGCCTGGGCCCCCACTCCCGTCCAGACCCCGGCGC : 3186
171 : rgThrProAsnProValGlnMetLeu >>>> Target Intron 1 >>>> ThrProA : 181
||||| |||||| ||| 60 bp ||| |
rgThrLeuAlaProValProThrLeu+- ++ThrArgA
3185 : GAACCCTGGCTCCCGTCCCGACCCTGgc.........................agACCCGGG : 3093
182 : laGlnThrArgThrProIleProThrProThrSerAlaArgSerLeuThrProValGlnThr : 201
||......||||||||| |||... ||| ||| ::: |||||||||||||||
laSerAlaArgThrProThrProValGlnThrProAlaTrpThrProThrProValGlnThr
3092 : CCTCAGCTCGGACCCCCACTCCCGTCCAGACTCCGGCCTGGACCCCCACTCCTGTCCAGACC : 3033
202 : ProThrProValTrpThrArgThrProThrArgIleArgThrProThrProAlaGlnMetPr : 222
|||... ...||||||...|||||| ::: ... ...|||||| :::
ProAlaSerAlaTrpThrHisThrProIleGlnThrProAlaArgAlaProAlaProValAr
3032 : CCAGCCTCGGCCTGGACCCACACTCCCATCCAGACCCCGGCCCGAGCCCCGGCTCCCGTCCG : 2970
223 : oThrArgValArgThrProIleProAlaArgMetProThrProIleTrpThrProProProA : 243
||| ...||||||||| |||...::: ... ||||||||| |||:
gThrLeuAlaArgThrProThrProValGlnThrGlnAlaLeuAlaTrpThrProAsnProS
2969 : GACCCTGGCCCGGACCCCGACTCCTGTCCAGACCCAGGCCTTGGCCTGGACCCCGAATCCCA : 2907
244 : laProAlaProAlaProThrProValProSerGlnVal : 255
:: ... ||| ||| |||:::
erGlnThrLeuAlaArgIleLeuAsnProValGlnMet
2906 : GCCAGACCCTGGCCCGGATCCTGAATCCAGTCCAGATG : 2869
vulgar: SPP00000123_2.0 66 255 . gi|471701120|gb|APMU01161634.1| 3483 2868 - 280 M 72 216 G 4 0 M 36 108 5 0 2 I 0 56 3 0 2 M 77 231
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local gene 2869 3483 280 - . gene_id 4 ; sequence SPP00000123_2.0 ; gene_orientation +
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 3160 3483 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 3160 3483 . - . insertions 0 ; deletions 4
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local splice5 3158 3159 . - . intron_id 1 ; splice_site "GC"
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local intron 3100 3159 . - . intron_id 1
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local splice3 3100 3101 . - . intron_id 0 ; splice_site "AG"
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 2869 3099 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 2869 3099 . - . insertions 0 ; deletions 0
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local similarity 2869 3483 280 - . alignment_id 4 ; Query SPP00000123_2.0 ; Align 3484 67 216 ; Align 3268 143 108 ; Align 3100 179 231
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Walrus (Odobenus rosmarus)
Target: gi|471701120|gb|APMU01161634.1| Leptonychotes weddellii contig161634, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 230
Query range: 122 -> 254
Target range: 3429 -> 3033
123 : ThrArgThrProValGlnThrLeuAlaArgThrProAlaProValGlnThrLeuAlaArgTh : 143
...|||...||| ... ||| ... ......||| ...|||||
AlaArgAlaProSerProAlaArgMetSerThrSerValArgAlaSerThrProGlyArgTh
3429 : GCGAGGGCCCCTTCCCCGGCCCGGATGTCGACCTCGGTCCGGGCTTCAACCCCAGGCAGGAC : 3369
144 : rProThrProIleArgThrProThrProValGlnThrGlnAlaLeuAlaTrpThrProAsnP : 164
| ||| ||||||||| |||||| ... ... ||||||...|
rSerThrSerAlaArgThrProLysAlaValGlnIleLeuThrArgThrArgThrProThrP
3368 : CTCGACTTCGGCCCGGACCCCGAAAGCCGTCCAGATCCTGACCCGCACCCGGACCCCGACTC : 3306
165 : roSerGlnThrLeuSerArgThrProAsnProValGlnMetLeuThrProAlaGlnThrArg : 184
|| ||| ::: ||||||...||||||||| ||| |||
roValProThrArgAlaTrpThrProThrProValGlnAlaProIleSerAlaTrpThrPro
3305 : CCGTCCCCACCCGGGCCTGGACCCCGACTCCCGTCCAGGCCCCGATCTCGGCCTGGACCCCG : 3246
185 : ThrProIleProThrProThrSerAlaArgSerLeuThrProValGlnThrProThrProVa : 205
||||||::: ...|||...|||||| ::: ||||||||||||||||||... ..
ThrProValArgAlaProAlaSerAlaTrpAlaProThrProValGlnThrProAlaArgTh
3245 : ACTCCCGTCCGGGCCCCAGCCTCAGCCTGGGCCCCCACTCCCGTCCAGACCCCGGCGCGAAC : 3183
206 : lTrpThrArgThrProThrArgIleArgThrProThrProAlaGlnMetProThrArgValA : 226
. ... ...|||||| |||||||||||| ||| ||| ...|
rLeuAlaProValProThrLeuAlaArgThrProThrArgIleGlnThrLeuThrSerAlaA
3182 : CCTGGCTCCCGTCCCGACCCTGGCCCGGACCCCGACTCGCATCCAGACCCTGACCTCCGCCC : 3120
227 : rgThrProIleProAlaArgMetProThrProIleTrpThrProProProAlaProAlaPro : 246
|||||||| ||||||::: ... |||||| |||... ...|||
rgThrProThrProAlaGlnThrArgAlaSerAlaArgThrProThrProValGlnThrPro
3119 : GGACCCCGACTCCTGCCCAGACCCGGGCCTCAGCTCGGACCCCCACTCCCGTCCAGACTCCG : 3060
247 : AlaProThrProValProSerGln : 254
||| ||||||...||| |||
AlaTrpThrProThrProValGln
3059 : GCCTGGACCCCCACTCCTGTCCAG : 3034
vulgar: SPP00000123_2.0 122 254 . gi|471701120|gb|APMU01161634.1| 3429 3033 - 230 M 132 396
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local gene 3034 3429 230 - . gene_id 5 ; sequence SPP00000123_2.0 ; gene_orientation .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 3034 3429 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 3034 3429 . - . insertions 0 ; deletions 0
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local similarity 3034 3429 230 - . alignment_id 5 ; Query SPP00000123_2.0 ; Align 3430 123 396
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Walrus (Odobenus rosmarus)
Target: gi|471701120|gb|APMU01161634.1| Leptonychotes weddellii contig161634, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 210
Query range: 67 -> 252
Target range: 3516 -> 2973
68 : ProAlaProValGlnThrProAlaArgThrLeuAlaProValProThrLeuValArgThrPr : 88
|||||| :::::: ...::: ...||| ||| ||
ProAlaGlnGlyArgSerThrGlyGlnAspProThrProHisProArgTyrProGlyGlyPr
3516 : CCCGCTCAAGGAAGGAGCACCGGGCAGGATCCCACCCCCCACCCCCGTTACCCCGGGGGGCC : 3456
89 : oThrArgIleGlnThrLeuThrSerAlaArgThrProThrProGlyGlnThrArgAlaSerA : 109
| ......||||||...|||:::|||...::: ...|||.
oProAlaProThrMetAsnAsnGlnAlaArgAlaProSerProAlaArgMetSerThrSerV
3455 : CCCTGCCCCCACCATGAACAACCAGGCGAGGGCCCCTTCCCCGGCCCGGATGTCGACCTCGG : 3393
110 : laArgThrProThrProValGlnThrProAlaLeuAlaTrpThrArgThrProValGlnThr : 129
..|||... |||||| :::||| ... ||| ||| ||||||
alArgAlaSerThrProGlyArgThrSerThrSerAlaArgThrProLysAlaValGlnIle
3392 : TCCGGGCTTCAACCCCAGGCAGGACCTCGACTTCGGCCCGGACCCCGAAAGCCGTCCAGATC : 3333
130 : LeuAlaArgThrProAlaProValGlnThrLeuAlaArgThrProThrProIleArgThrPr : 150
|||...|||||| ...|||... ...|||||| |||||
LeuThrArgThrArgThrProThrPro------------ValProThrArgAlaTrpThrPr
3332 : CTGACCCGCACCCGGACCCCGACTCCC------------GTCCCCACCCGGGCCTGGACCCC : 3282
151 : oThrProValGlnThrGlnAlaLeuAlaTrpThrProAsnProSerGlnThrLeuSerArgT : 171
|||||||||||||... ||||||||||||...||| :::... ::: .
oThrProValGlnAlaProIleSerAlaTrpThrProThrProValArgAlaProAlaSerA
3281 : GACTCCCGTCCAGGCCCCGATCTCGGCCTGGACCCCGACTCCCGTCCGGGCCCCAGCCTCAG : 3219
172 : hrProAsnProValGlnMetLeuThrProAlaGlnThrArgThrProIleProThrProThr : 191
.. |||... ::: |||||||||:::||| ...|||:::|||||| ...
laTrpAlaProThrProValGlnThrProAlaArgThrLeuAlaProValProThrLeuAla
3218 : CCTGGGCCCCCACTCCCGTCCAGACCCCGGCGCGAACCCTGGCTCCCGTCCCGACCCTGGCC : 3159
192 : SerAlaArgSerLeuThrProValGlnThrProThrProValTrpThrArgThrProThrAr : 212
... ::: ... ||| ... ... ||| ... |||||
ArgThrProThrArgIleGlnThrLeuThrSerAlaArgThrProThrProAlaGlnThrAr
3158 : CGGACCCCGACTCGCATCCAGACCCTGACCTCCGCCCGGACCCCGACTCCTGCCCAGACCCG : 3096
213 : gIleArgThrProThrProAlaGlnMetProThrArgValArgThrProIleProAlaArgM : 233
| ... ||||||... ::: ||| ... |||||| |||...:::
gAlaSerAlaArgThrProThrProValGlnThrProAlaTrpThrProThrProValGlnT
3095 : GGCCTCAGCTCGGACCCCCACTCCCGTCCAGACTCCGGCCTGGACCCCCACTCCTGTCCAGA : 3033
234 : etProThrProIleTrpThrProProProAlaProAlaProAlaProThrProValPro : 252
|||... |||||| ||| ...|||||| ...|||...|||
hrProAlaSerAlaTrpThrHisThrProIleGlnThrProAlaArgAlaProAlaPro
3032 : CCCCAGCCTCGGCCTGGACCCACACTCCCATCCAGACCCCGGCCCGAGCCCCGGCTCCC : 2974
vulgar: SPP00000123_2.0 67 252 . gi|471701120|gb|APMU01161634.1| 3516 2973 - 210 M 71 213 G 4 0 M 110 330
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local gene 2974 3516 210 - . gene_id 6 ; sequence SPP00000123_2.0 ; gene_orientation .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 2974 3516 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 2974 3516 . - . insertions 0 ; deletions 4
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local similarity 2974 3516 210 - . alignment_id 6 ; Query SPP00000123_2.0 ; Align 3517 68 213 ; Align 3304 143 330
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Walrus (Odobenus rosmarus)
Target: gi|471701120|gb|APMU01161634.1| Leptonychotes weddellii contig161634, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 187
Query range: 116 -> 250
Target range: 3417 -> 3027
117 : ThrProAlaLeuAlaTrpThrArgThrProValGlnThrLeuAlaArgThrProAlaProVa : 137
:::|||||| ||| ... ......||| ...|||||| ... ..
SerProAlaArgMetSerThrSerValArgAlaSerThrProGlyArgThrSerThrSerAl
3417 : TCCCCGGCCCGGATGTCGACCTCGGTCCGGGCTTCAACCCCAGGCAGGACCTCGACTTCGGC : 3357
138 : lGlnThrLeuAlaArgThrProThrProIleArgThrProThrProValGlnThrGlnAlaL : 158
.:::||| ... |||||| ||||||... ... ...
aArgThrProLysAlaValGlnIleLeuThrArgThrArgThrProThrProValProThrA
3356 : CCGGACCCCGAAAGCCGTCCAGATCCTGACCCGCACCCGGACCCCGACTCCCGTCCCCACCC : 3294
159 : euAlaTrpThrProAsnProSerGlnThrLeuSerArgThrProAsnProValGlnMetLeu : 178
||||||||||||...||| |||... ... ...|||... :::
rgAlaTrpThrProThrProValGlnAlaProIleSerAlaTrpThrProThrProValArg
3293 : GGGCCTGGACCCCGACTCCCGTCCAGGCCCCGATCTCGGCCTGGACCCCGACTCCCGTCCGG : 3234
179 : ThrProAlaGlnThrArgThrProIleProThrProThrSerAlaArgSerLeuThrProVa : 199
...||||||...... ...||| |||... ||| ||||||:::|||...|||||
AlaProAlaSerAlaTrpAlaProThrProValGlnThrProAlaArgThrLeuAlaProVa
3233 : GCCCCAGCCTCAGCCTGGGCCCCCACTCCCGTCCAGACCCCGGCGCGAACCCTGGCTCCCGT : 3171
200 : lGlnThrProThrProValTrpThrArgThrProThrArgIleArgThrProThrProAlaG : 220
| |||... ...||||||||||||||||||:::||| ||| |||:
l------------ProThrLeuAlaArgThrProThrArgIleGlnThrLeuThrSerAlaA
3170 : C------------CCGACCCTGGCCCGGACCCCGACTCGCATCCAGACCCTGACCTCCGCCC : 3120
221 : lnMetProThrArgValArgThrProIleProAlaArgMetProThrProIleTrpThrPro : 240
:: |||||| ...:::||| |||||| |||||||||::: ||||||
rgThrProThrProAlaGlnThrArgAlaSerAlaArgThrProThrProValGlnThrPro
3119 : GGACCCCGACTCCTGCCCAGACCCGGGCCTCAGCTCGGACCCCCACTCCCGTCCAGACTCCG : 3060
241 : ProProAlaProAlaProAlaProThrPro : 250
...|||...|||... ||||||
AlaTrpThrProThrProValGlnThrPro
3059 : GCCTGGACCCCCACTCCTGTCCAGACCCCA : 3028
vulgar: SPP00000123_2.0 116 250 . gi|471701120|gb|APMU01161634.1| 3417 3027 - 187 M 83 249 G 4 0 M 47 141
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local gene 3028 3417 187 - . gene_id 7 ; sequence SPP00000123_2.0 ; gene_orientation .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 3028 3417 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 3028 3417 . - . insertions 0 ; deletions 4
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local similarity 3028 3417 187 - . alignment_id 7 ; Query SPP00000123_2.0 ; Align 3418 117 249 ; Align 3169 204 141
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Walrus (Odobenus rosmarus)
Target: gi|471701120|gb|APMU01161634.1| Leptonychotes weddellii contig161634, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 152
Query range: 168 -> 252
Target range: 3429 -> 3171
169 : SerArgThrProAsnProValGlnMetLeuThrProAlaGlnThrArgThrProIleProTh : 189
:::|||...|||:::|||...:::||| ||| ...:::... |||||| ||
AlaArgAlaProSerProAlaArgMetSerThrSerValArgAlaSerThrProGlyArgTh
3429 : GCGAGGGCCCCTTCCCCGGCCCGGATGTCGACCTCGGTCCGGGCTTCAACCCCAGGCAGGAC : 3369
190 : rProThrSerAlaArgSerLeuThrProValGln<-><->ThrProThrProValTrpThrA : 208
| ||||||||||||::: |||||| ||| ||| ... |||
rSerThrSerAlaArgThrProLysAlaValGlnIleLeuThrArgThrArgThrProThrP
3368 : CTCGACTTCGGCCCGGACCCCGAAAGCCGTCCAGATCCTGACCCGCACCCGGACCCCGACTC : 3306
209 : rgThrProThrArgIleArgThrProThrProAlaGlnMetProThrArgValArgThrPro : 228
...||||||||| ||||||||||||...||| ||| ... ||||||
roValProThrArgAlaTrpThrProThrProValGlnAlaProIleSerAlaTrpThrPro
3305 : CCGTCCCCACCCGGGCCTGGACCCCGACTCCCGTCCAGGCCCCGATCTCGGCCTGGACCCCG : 3246
229 : IleProAlaArgMetProThrProIleTrpThrProProProAlaProAlaProAlaProTh : 249
|||...||| |||... |||...||| |||... ...|||||| ||
ThrProValArgAlaProAlaSerAlaTrpAlaProThrProValGlnThrProAlaArgTh
3245 : ACTCCCGTCCGGGCCCCAGCCTCAGCCTGGGCCCCCACTCCCGTCCAGACCCCGGCGCGAAC : 3183
250 : rProValPro : 252
| ...|||
rLeuAlaPro
3182 : CCTGGCTCCC : 3172
vulgar: SPP00000123_2.0 168 252 . gi|471701120|gb|APMU01161634.1| 3429 3171 - 152 M 32 96 G 0 6 M 52 156
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local gene 3172 3429 152 - . gene_id 8 ; sequence SPP00000123_2.0 ; gene_orientation .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 3172 3429 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 3172 3429 . - . insertions 6 ; deletions 0
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local similarity 3172 3429 152 - . alignment_id 8 ; Query SPP00000123_2.0 ; Align 3430 169 96 ; Align 3328 201 156
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Walrus (Odobenus rosmarus)
Target: gi|471701120|gb|APMU01161634.1| Leptonychotes weddellii contig161634, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 138
Query range: 151 -> 282
Target range: 3516 -> 3111
152 : ProValGlnThrGlnAlaLeuAlaTrpThrProAsnProSerGlnThrLeuSerArgThrPr : 172
|||...||| :::::: ... |||...||| ||
ProAlaGlnGlyArgSerThrGlyGlnAspProThrProHisProArgTyrProGlyGlyPr
3516 : CCCGCTCAAGGAAGGAGCACCGGGCAGGATCCCACCCCCCACCCCCGTTACCCCGGGGGGCC : 3456
173 : oAsnProValGlnMetLeuThrProAlaGlnThrArgThrProIleProThrProThrSerA : 193
| ||| ... |||:::... :::||| ||||||.
oProAlaProThrMetAsnAsnGlnAlaArgAlaProSerProAlaArgMetSerThrSerV
3455 : CCCTGCCCCCACCATGAACAACCAGGCGAGGGCCCCTTCCCCGGCCCGGATGTCGACCTCGG : 3393
194 : laArgSerLeuThrProValGlnThrProThrProValTrpThrArgThrProThrArgIle : 213
..|||::: |||||| :::||| ||| ... ||| ...:::|||
alArgAlaSerThrProGlyArgThrSerThrSerAlaArgThrProLysAlaValGlnIle
3392 : TCCGGGCTTCAACCCCAGGCAGGACCTCGACTTCGGCCCGGACCCCGAAAGCCGTCCAGATC : 3333
214 : <-><->ArgThrProThrProAlaGlnMetProThrArgValArgThrProIleProAlaAr : 232
|||||| ||||||... :::|||||||||... |||||| |||...::
LeuThrArgThrArgThrProThrProValProThrArgAlaTrpThrProThrProValGl
3332 : CTGACCCGCACCCGGACCCCGACTCCCGTCCCCACCCGGGCCTGGACCCCGACTCCCGTCCA : 3270
233 : gMetProThrProIleTrpThrProProPro<-><->AlaProAlaProAlaProThrProV : 251
: ||| ||||||||| ||| ||||||||| ||| ...|||.
nAlaProIleSerAlaTrpThrProThrProValArgAlaProAlaSerAlaTrpAlaProT
3269 : GGCCCCGATCTCGGCCTGGACCCCGACTCCCGTCCGGGCCCCAGCCTCAGCCTGGGCCCCCA : 3207
252 : alProSerGlnValGlyIleGluIleThrAlaAlaValProAlaSerGluSerPheProAsp : 271
..||| |||... ... ||| ||||||... |||
hrProValGlnThrProAlaArgThrLeuAlaProValProThrLeuAlaArgThrProThr
3206 : CTCCCGTCCAGACCCCGGCGCGAACCCTGGCTCCCGTCCCGACCCTGGCCCGGACCCCGACT : 3147
272 : SerValValProLeuAspProHisArgGluPro : 282
::: ||| ||| |||
ArgIleGlnThrLeuThrSerAlaArgThrPro
3146 : CGCATCCAGACCCTGACCTCCGCCCGGACCCCG : 3112
vulgar: SPP00000123_2.0 151 282 . gi|471701120|gb|APMU01161634.1| 3516 3111 - 138 M 62 186 G 0 6 M 29 87 G 0 6 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local gene 3112 3516 138 - . gene_id 9 ; sequence SPP00000123_2.0 ; gene_orientation .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 3112 3516 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 3112 3516 . - . insertions 12 ; deletions 0
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local similarity 3112 3516 138 - . alignment_id 9 ; Query SPP00000123_2.0 ; Align 3517 152 186 ; Align 3325 214 87 ; Align 3232 243 120
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Walrus (Odobenus rosmarus)
Target: gi|471701120|gb|APMU01161634.1| Leptonychotes weddellii contig161634, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 122
Query range: 71 -> 165
Target range: 3432 -> 3162
72 : GlnThrProAlaArgThrLeuAlaProValProThrLeuValArgThrProThrArgIleGl : 92
|||... ||| ::: ||| ::: ||| ||||||... ||| ::
GlnAlaArgAlaProSerProAlaArgMetSerThrSerValArgAlaSerThrProGlyAr
3432 : CAGGCGAGGGCCCCTTCCCCGGCCCGGATGTCGACCTCGGTCCGGGCTTCAACCCCAGGCAG : 3372
93 : nThrLeuThrSerAlaArgThrProThrProGlyGlnThrArgAlaSerAlaArgThrProT : 113
:||| |||||||||||||||||| ||| ... ...||||||||||
gThrSerThrSerAlaArgThrProLysAlaValGlnIleLeuThrArgThrArgThrProT
3371 : GACCTCGACTTCGGCCCGGACCCCGAAAGCCGTCCAGATCCTGACCCGCACCCGGACCCCGA : 3309
114 : hrProValGlnThrProAlaLeuAlaTrpThrArgThrProValGlnThrLeuAlaArgThr : 133
|||||||| |||... ||||||||| |||||||||||| |||
hrProVal------ProThrArgAlaTrpThrProThrProValGln------AlaProIle
3308 : CTCCCGTC------CCCACCCGGGCCTGGACCCCGACTCCCGTCCAG------GCCCCGATC : 3261
134 : ProAlaProValGlnThrLeuAlaArgThrProThrProIleArgThrProThrProValGl : 154
||| ... ||| ...|||...|||... ...||||||||||||||
SerAlaTrpThrProThrProValArgAlaProAlaSerAlaTrpAlaProThrProValGl
3260 : TCGGCCTGGACCCCGACTCCCGTCCGGGCCCCAGCCTCAGCCTGGGCCCCCACTCCCGTCCA : 3198
155 : nThrGlnAlaLeuAlaTrpThrProAsnProSer : 165
|||| ||| ... ...||| |||:::
nThrProAlaArgThrLeuAlaProValProThr
3197 : GACCCCGGCGCGAACCCTGGCTCCCGTCCCGACC : 3163
vulgar: SPP00000123_2.0 71 165 . gi|471701120|gb|APMU01161634.1| 3432 3162 - 122 M 44 132 G 2 0 M 11 33 G 2 0 M 35 105
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local gene 3163 3432 122 - . gene_id 10 ; sequence SPP00000123_2.0 ; gene_orientation .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 3163 3432 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 3163 3432 . - . insertions 0 ; deletions 4
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local similarity 3163 3432 122 - . alignment_id 10 ; Query SPP00000123_2.0 ; Align 3433 72 132 ; Align 3301 118 33 ; Align 3268 131 105
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Walrus (Odobenus rosmarus)
Target: gi|471701120|gb|APMU01161634.1| Leptonychotes weddellii contig161634, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 103
Query range: 27 -> 114
Target range: 3438 -> 3165
28 : SerThrSerAlaArgThrProLysProIleGlnIleLeuThrProAlaArgAsnLeuThrPr : 48
:::......||||||...|||...||| :::::: ||| ...||| |||||
AsnAsnGlnAlaArgAlaProSerProAlaArgMetSerThrSerValArgAlaSerThrPr
3438 : AACAACCAGGCGAGGGCCCCTTCCCCGGCCCGGATGTCGACCTCGGTCCGGGCTTCAACCCC : 3378
49 : o<-><->ValProThrArgAlaTrpThrProThrProValGlnAlaProAlaSerAlaTrpT : 67
| ... ||| ||| |||||| |||||| ... ... |
oGlyArgThrSerThrSerAlaArgThrProLysAlaValGlnIleLeuThrArgThrArgT
3377 : AGGCAGGACCTCGACTTCGGCCCGGACCCCGAAAGCCGTCCAGATCCTGACCCGCACCCGGA : 3315
68 : hrProAlaProValGlnThrProAlaArgThrLeuAlaProVal<-><->ProThrLeuVal : 85
|||||...|||||| ||| ||| ||| ...|||||| ||| ...
hrProThrProValProThrArgAlaTrpThrProThrProValGlnAlaProIleSerAla
3314 : CCCCGACTCCCGTCCCCACCCGGGCCTGGACCCCGACTCCCGTCCAGGCCCCGATCTCGGCC : 3255
86 : ArgThrProThrArgIleGlnThrLeuThrSerAlaArgThrProThrProGlyGlnThrAr : 106
||||||||| ::::::... ...|||||| ...||||||||| ||||||
TrpThrProThrProValArgAlaProAlaSerAlaTrpAlaProThrProValGlnThrPr
3254 : TGGACCCCGACTCCCGTCCGGGCCCCAGCCTCAGCCTGGGCCCCCACTCCCGTCCAGACCCC : 3192
107 : gAlaSerAlaArgThrProThrPro : 114
||| ... ...|||...|||
oAlaArgThrLeuAlaProValPro
3191 : GGCGCGAACCCTGGCTCCCGTCCCG : 3166
vulgar: SPP00000123_2.0 27 114 . gi|471701120|gb|APMU01161634.1| 3438 3165 - 103 M 21 63 G 0 6 M 33 99 G 0 6 M 33 99
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local gene 3166 3438 103 - . gene_id 11 ; sequence SPP00000123_2.0 ; gene_orientation .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 3166 3438 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 3166 3438 . - . insertions 12 ; deletions 0
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local similarity 3166 3438 103 - . alignment_id 11 ; Query SPP00000123_2.0 ; Align 3439 28 63 ; Align 3370 49 99 ; Align 3265 82 99
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Walrus (Odobenus rosmarus)
Target: gi|471701120|gb|APMU01161634.1| Leptonychotes weddellii contig161634, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 102
Query range: 188 -> 270
Target range: 3423 -> 3189
189 : ThrProThrSerAlaArgSerLeuThrProValGlnThrProThrProValTrpThrArgTh : 209
...|||::: |||||| ||| |||:::... |||||| |||||
AlaProSerProAlaArgMetSerThrSerValArgAlaSerThrPro------GlyArgTh
3423 : GCCCCTTCCCCGGCCCGGATGTCGACCTCGGTCCGGGCTTCAACCCCA------GGCAGGAC : 3369
210 : rProThrArgIleArgThrProThrProAlaGlnMetProThrArgValArgThrProIleP : 230
| ||| ||||||||| ...|||::: ||||||...||||||||| |
rSerThrSerAlaArgThrProLysAlaValGlnIleLeuThrArgThrArgThrProThrP
3368 : CTCGACTTCGGCCCGGACCCCGAAAGCCGTCCAGATCCTGACCCGCACCCGGACCCCGACTC : 3306
231 : roAlaArgMetProThrProIleTrpThrProProProAlaProAlaProAlaProThrPro : 250
|| :::|||||| ||||||||| |||... |||||| ...
ro------ValProThrArgAlaTrpThrProThrProValGlnAlaProIleSerAlaTrp
3305 : CC------GTCCCCACCCGGGCCTGGACCCCGACTCCCGTCCAGGCCCCGATCTCGGCCTGG : 3252
251 : ValProSerGlnValGlyIleGluIleThrAlaAlaValProAlaSerGluSerPhePro : 270
...|||::: ||| :::||| ...|||... ... |||
ThrProThrProValArgAlaProAlaSerAlaTrpAlaProThrProValGlnThrPro
3251 : ACCCCGACTCCCGTCCGGGCCCCAGCCTCAGCCTGGGCCCCCACTCCCGTCCAGACCCCG : 3190
vulgar: SPP00000123_2.0 188 270 . gi|471701120|gb|APMU01161634.1| 3423 3189 - 102 M 16 48 G 2 0 M 24 72 G 2 0 M 38 114
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local gene 3190 3423 102 - . gene_id 12 ; sequence SPP00000123_2.0 ; gene_orientation .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local cds 3190 3423 . - .
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local exon 3190 3423 . - . insertions 0 ; deletions 4
gi|471701120|gb|APMU01161634.1| exonerate:protein2genome:local similarity 3190 3423 102 - . alignment_id 12 ; Query SPP00000123_2.0 ; Align 3424 189 48 ; Align 3376 207 72 ; Align 3304 233 114
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis