Command line: [exonerate -m p2g --showtargetgff -q ./SelT.fa -t SelT.carpeta/genomic.fa]
Hostname: [ws101068]
C4 Alignment:
------------
Query: SPP00000106_2.0 # Protein # Selenoprotein T (SelT) # Walrus (Odobenus rosmarus)
Target: gi|472269549|gb|KB715140.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00434, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 152
Query range: 125 -> 154
Target range: 975927 -> 976014
126 : ValTyrAlaCysMetMetValPhePheLeuSerAsnMetIleGluAsnGlnCysMetS : 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ValTyrAlaCysMetMetValPhePheLeuSerAsnMetIleGluAsnGlnCysMetS
975928 : GTCTATGCATGTATGATGGTTTTCTTCTTGAGCAACATGATTGAGAACCAGTGTATGT : 975985
146 : erThrGlyAlaPheGluIleThrLeuAsn : 154
|||||||||||||||||||||||||||||
erThrGlyAlaPheGluIleThrLeuAsn
975986 : CAACAGGTGCATTTGAGATAACTTTGAAT : 976014
vulgar: SPP00000106_2.0 125 154 . gi|472269549|gb|KB715140.1| 975927 976014 + 152 M 29 87
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269549|gb|KB715140.1| exonerate:protein2genome:local gene 975928 976014 152 + . gene_id 1 ; sequence SPP00000106_2.0 ; gene_orientation .
gi|472269549|gb|KB715140.1| exonerate:protein2genome:local cds 975928 976014 . + .
gi|472269549|gb|KB715140.1| exonerate:protein2genome:local exon 975928 976014 . + . insertions 0 ; deletions 0
gi|472269549|gb|KB715140.1| exonerate:protein2genome:local similarity 975928 976014 152 + . alignment_id 1 ; Query SPP00000106_2.0 ; Align 975928 126 87
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis