TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000106_2.0 # Protein # Selenoprotein T (SelT) # Walrus (Odobenus rosmarus) (195 letters) Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno me.fa 16,710 sequences; 3,156,886,159 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|472269549|gb|KB715140.1| Leptonychotes weddellii isolate WS11... 63 8e-09 gi|472265014|gb|KB719643.1| Leptonychotes weddellii isolate WS11... 36 1.4 gi|472268456|gb|KB716201.1| Leptonychotes weddellii isolate WS11... 34 3.9 gi|472269088|gb|KB715569.1| Leptonychotes weddellii isolate WS11... 33 6.7 gi|472269974|gb|KB714715.1| Leptonychotes weddellii isolate WS11... 33 8.8 >gi|472269549|gb|KB715140.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00434, whole genome shotgun sequence Length = 1368932 Score = 63.2 bits (152), Expect = 8e-09 Identities = 29/29 (100%), Positives = 29/29 (100%) Frame = +1 Query: 126 VYACMMVFFLSNMIENQCMSTGAFEITLN 154 VYACMMVFFLSNMIENQCMSTGAFEITLN Sbjct: 975928 VYACMMVFFLSNMIENQCMSTGAFEITLN 976014 >gi|472265014|gb|KB719643.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold04937, whole genome shotgun sequence Length = 101269 Score = 35.8 bits (81), Expect = 1.4 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = -2 Query: 146 TGAFEITLNDVPVWSKLESGHLPS 169 TG F+IT ++VP+W L S HLPS Sbjct: 95664 TGPFQITQDNVPIWRSLTSSHLPS 95593 >gi|472268456|gb|KB716201.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01495, whole genome shotgun sequence Length = 756842 Score = 34.3 bits (77), Expect = 3.9 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = -2 Query: 99 LIIVGKDPFAFFGMQAPSIWQWGQENKVYACMMVFFLSNMIENQCMST--GAFEITLNDV 156 ++++G+ G A W WG++ + C+ +FF + QC T + EI +N V Sbjct: 642136 MVLIGELKTEAVGAVASGEWSWGEKLSFFICLSLFFK----KIQCSGTFLKSLEIFVNRV 641969 Query: 157 PVW 159 P W Sbjct: 641968 PGW 641960 >gi|472269088|gb|KB715569.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00863, whole genome shotgun sequence Length = 949633 Score = 33.5 bits (75), Expect = 6.7 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = -1 Query: 57 EYMRVISQRYPDIRIEGENYLPQPIYRHIAS 87 EY+ ++ + YPD R++G +LP P+Y + S Sbjct: 808480 EYLIIMFEEYPDYRLKGLRFLPLPLYPRLYS 808388 >gi|472269974|gb|KB714715.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00009, whole genome shotgun sequence Length = 6678008 Score = 33.1 bits (74), Expect = 8.8 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -2 Query: 141 NQCMSTGAFEITLNDVP-VWSKLESGHLPSMQQLVQILDNEMKLNVHM 187 N + G F T+ P WSKLE G +PS+ V IL + +N+H+ Sbjct: 1889614 NSSVIRGLFLRTITSHP*DWSKLEKGKMPSVGSDVGILKTKQSINLHI 1889471 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 3,087,506,849 Number of sequences in database: 5788 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa.01 Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 69,379,310 Number of sequences in database: 10,922 Lambda K H 0.326 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 693,505,943 Number of Sequences: 16710 Number of extensions: 10182818 Number of successful extensions: 53908 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 571 Number of HSP's successfully gapped in prelim test: 353 Number of HSP's that attempted gapping in prelim test: 49803 Number of HSP's gapped (non-prelim): 11508 length of query: 195 length of database: 1,052,295,386 effective HSP length: 125 effective length of query: 70 effective length of database: 1,050,206,636 effective search space: 73514464520 effective search space used: 73514464520 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 74 (33.1 bits)