Command line: [exonerate -m p2g --showtargetgff -q ./SelP.fa -t SelP.carpeta/genomic.fa]
Hostname: [ws101095]
C4 Alignment:
------------
Query: SPP00000082_2.0 # Protein # Selenoprotein P (SelP) # Human (Homo sapiens)
Target: gi|472267375|gb|KB717282.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02576, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 1359
Query range: 0 -> 374
Target range: 215848 -> 223880
1 : MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProSerGlyGlyThrG : 20
|||||||||||||||||||||||||||||||||||||||||||||!!!||||||.!!|
MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProTrpGlyGlyAlaG
215849 : ATGTGGAGAAGCCTGGGGCTTGCCCTGGCTCTCTGTCTTCTCCCATGGGGAGGAGCAG : 215906
21 : luSerGlnAspGlnSerSerLeuCysLysGlnProProAlaTrpSerIleArgAspGl : 39
||||||||!!:|||||||||!!!||||||||||||||||||||||||||| !!|||||
luSerGlnGluGlnSerSerPheCysLysGlnProProAlaTrpSerIleGlyAspGl
215907 : AGAGCCAGGAACAAAGCTCCTTCTGTAAGCAGCCTCCAGCCTGGAGCATAGGAGATCA : 215963
40 : nAspProMetLeuAsnSerAsnGlySerValThrValValAlaLeuLeuGlnAlaSer : 58
|:!!|||||||||||||||!:!||||||||||||||||||:!!|||||||||||||||
nAsnProMetLeuAsnSerSerGlySerValThrValValSerLeuLeuGlnAlaSer
215964 : AAATCCAATGCTGAACTCAAGTGGTTCGGTAACAGTGGTGTCCCTTCTTCAAGCCAGC : 216020
59 : UnkTyrLeuCysIleLeuGlnAlaSer{Ly} >>>> Target Intron 1 >>>> : 68
||||||||||||||||||||||||{!:} 762 bp
***TyrLeuCysIleLeuGlnAlaSer{Ar}++
216021 : TGATACCTGTGCATTCTGCAGGCATCC{AG}gt......................... : 216054
69 : {s}LeuGluAspLeuArgValLysLeuLysLysGluGlyTyrSerAsnIleSerTy : 86
{!}||||||||||||||||||||||||:!!||||||||||||! !|||||||||||
++{g}LeuGluAspLeuArgValLysLeuGluLysGluGlyTyrLeuAsnIleSerTy
216055 : ag{A}TTGGAAGACCTGCGAGTAAAACTGGAGAAAGAAGGATATTTGAACATCTCTTA : 216866
87 : rIleValValAsnHisGlnGlyIleSerSerArgLeuLysTyrThrHisLeuLysAsn : 105
|:!!||||||||||||||||||:!!||||||!:!|||||||||! !||||||||||||
rValValValAsnHisGlnGlyLeuSerSerGlnLeuLysTyrMetHisLeuLysAsn
216867 : TGTTGTTGTTAATCATCAAGGACTTTCTTCTCAATTAAAATATATGCATCTTAAAAAT : 216923
106 : LysValSerGluHisIleProValTyrGlnGlnGluGluAsnGlnThrAspValTrpT : 125
||||||||||||:!!||||||||||||||||||||||||||||||||||||||||||!
LysValSerGluTyrIleProValTyrGlnGlnGluGluAsnGlnThrAspValTrpM
216924 : AAGGTTTCAGAGTATATTCCTGTTTATCAACAAGAAGAAAACCAAACAGATGTCTGGA : 216983
126 : hrLeuLeuAsnGlySerLysAspAspPheLeuIleTyrAsp{Ar} >>>> Target : 139
!||||||||||||!.!||||||||||||||||||||||||{||} 12
etLeuLeuAsnGlyLysLysAspAspPheLeuIleTyrAsp{Ar}++
216984 : TGCTGTTAAATGGGAAAAAGGATGACTTCCTCATATATGAC{AG}gt........... : 217029
140 : Intron 2 >>>> {g}CysGlyArgLeuValTyrHisLeuGlyLeuProPheSer : 152
84 bp {|}|||||||||||||||||||||||||||||||||!:!|||
++{g}CysGlyArgLeuValTyrHisLeuGlyLeuProTyrSer
217030 : ..............ag{A}TGTGGCCGTCTTGTATACCATCTTGGTTTGCCTTACTCC : 218348
153 : PheLeuThrPheProTyrValGluGluAlaIleLysIleAlaTyrCysGluLysLysC : 172
||||||||||||||||||||||||||||||||||||.!!.!!||||||:!!:!!||||
PheLeuThrPheProTyrValGluGluAlaIleLysPheThrTyrCysLysGluLysC
218349 : TTTCTAACTTTCCCATATGTAGAAGAAGCCATTAAATTTACTTACTGTAAAGAGAAAT : 218408
173 : ysGlyAsnCysSerLeuThr >>>> Target Intron 3 >>>> ThrLeuLys : 181
|||||:!!|||||||||! ! 4846 bp ||||||:!!
ysGlyHisCysSerLeuMet++ ++ThrLeuGlu
218409 : GTGGACACTGCTCTCTCATGgt.........................agACCCTGGAA : 223281
182 : AspGluAspPheCysLysArgValSerLeuAlaThrValAspLysThrValGluThrP : 201
! !! !||| !||||||! !||||||! !|||||||||! !!.|||..!|||.!!|
AlaAlaAspHisCysLysMetValSerSerAlaThrValGlyAsnThrThrGluAlaP
223282 : GCTGCAGACCACTGTAAAATGGTATCTTCGGCTACTGTGGGAAACACAACTGAGGCTC : 223341
202 : roSerProHisTyrHisHisGluHisHis<->HisAsn<-><->HisGlyHisGlnHi : 217
||..!||||||:!!||||||.!.|||||| |||:!! |||! !||||||||
roGlnProHisHisHisHisHisHisHisGlyHisHisLeuLysHisGluHisGlnHi
223342 : CCCAGCCACATCACCACCACCACCACCATGGTCATCATCTCAAGCATGAGCATCAGCA : 223398
218 : sLeuGlySerSerGluLeuSerGluAsnGlnGlnProGlyAlaProAsnAlaProThr : 236
|! !|||! !..!! !:!!||||||||||||||||||! !||||||:!!||| !! !
sHisGlyIleAspGlyValSerGluAsnGlnGlnProGluAlaProAspAlaAlaGlu
223399 : TCATGGGATTGATGGGGTTTCAGAGAATCAGCAACCAGAAGCCCCAGATGCGGCTGAG : 223455
237 : HisProAlaProProGlyLeuHisHisHisHisLysHisLysGlyGlnHisArgGlnG : 256
||||||.!!||| !|||||||||||||||||||||||||||..!!!.!!.|||||||
HisProThrPro***GlyLeuHisHisHisHisLysHisLysAsnHisGlnArgGlnG
223456 : CATCCCACTCCTTGAGGCCTCCATCACCACCATAAGCACAAGAACCACCAAAGACAGG : 223515
257 : lyHisProGluAsnArgAspMetProAla<->SerGluAspLeuGln<-><->AspLe : 272
|||||||||||!.! !!|||:!!|||||| ||||||..!|||||| ! !!
lyHisProGluThr***AspLeuProAlaGlySerGluSerLeuGlnLeuSerValPr
223516 : GCCACCCAGAGACCTGAGATCTGCCAGCAGGAAGTGAAAGTTTACAACTTTCTGTTCC : 223572
273 : uGlnLysLysLeuCysArgLysArgCysIleAsnGlnLeuLeuCysLysLeuProThr : 291
!|||!:!!:!|||!! !!||| !!||||||||||||||||||||||||||||||! !
oGlnArgArgLeu******LysGlyCysIleAsnGlnLeuLeuCysLysLeuProLys
223573 : ACAGAGGAGGCTCTGATGAAAGGGATGTATAAATCAATTACTCTGCAAATTGCCTAAA : 223629
292 : AspSerGluLeuAlaProArgSerUnkCysCysHisCysArgHisLeuIlePheGluL : 311
||||||! !|||||||||!.!||| |||!! |||!! |||||||||||||||||||
AspSerGlyLeuAlaProAsnSerCysCys***His***ArgHisLeuIlePheGluL
223630 : GATTCAGGGTTGGCCCCTAACAGCTGTTGCTGACACTGACGACATCTGATATTTGAAA : 223689
312 : ysThrGlySerAlaIleThrUnkGlnCysLysGluAsnLeuProSerLeuCysSerUn : 330
|||||||||||||||||||| ||||||||||||!.!||||||||||||||||||
ysThrGlySerAlaIleThr***GlnCysLysGluThrLeuProSerLeuCysSer**
223690 : AAACAGGGTCTGCAATCACCTGACAATGTAAAGAAACCCTCCCCTCTTTATGCAGCTG : 223746
331 : kGlnGlyLeuArgAlaGluGluAsnIleThrGluSerCysGlnUnkArgLeuProPro : 349
||||||||| !!||||||||||||:!!! !||||||!! ||| ||||||||||||
*GlnGlyLeuTrpAlaGluGluAsnValIleGluSer***Gln***ArgLeuProPro
223747 : ACAGGGACTTTGGGCAGAGGAGAACGTCATTGAATCTTGACAGTGACGTTTGCCTCCG : 223803
350 : AlaAlaUnkGlnIleSerGlnGlnLeuIleProThrGluAlaSerAlaSerUnkArgU : 369
|||||| ||| !|||||||||||| ||||||||||||||||||||| !!!
AlaAla***GlnAlaSerGlnGlnLeuGlnProThrGluAlaSerAlaSer***Ser*
223804 : GCTGCCTGACAAGCAAGTCAGCAGCTTCAGCCCACAGAAGCCAGCGCCAGTTGAAGCT : 223863
370 : nkLysAsnGlnAlaLys : 374
|||:!!:!!||||||
**LysHisLysAlaLys
223864 : GAAAACATAAGGCCAAA : 223880
vulgar: SPP00000082_2.0 0 374 . gi|472267375|gb|KB717282.1| 215848 223880 + 1359 M 67 201 S 0 2 5 0 2 I 0 758 3 0 2 S 1 1 M 70 210 S 0 2 5 0 2 I 0 1280 3 0 2 S 1 1 M 39 117 5 0 2 I 0 4842 3 0 2 M 32 96 G 0 3 M 2 6 G 0 6 M 53 159 G 0 3 M 5 15 G 0 6 M 104 312
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local gene 215849 223880 1359 + . gene_id 1 ; sequence SPP00000082_2.0 ; gene_orientation +
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local cds 215849 216051 . + .
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local exon 215849 216051 . + . insertions 0 ; deletions 0
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local splice5 216052 216053 . + . intron_id 1 ; splice_site "GT"
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local intron 216052 216813 . + . intron_id 1
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local splice3 216812 216813 . + . intron_id 0 ; splice_site "AG"
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local cds 216814 217026 . + .
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local exon 216814 217026 . + . insertions 0 ; deletions 0
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local splice5 217027 217028 . + . intron_id 2 ; splice_site "GT"
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local intron 217027 218310 . + . intron_id 2
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local splice3 218309 218310 . + . intron_id 1 ; splice_site "AG"
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local cds 218311 218428 . + .
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local exon 218311 218428 . + . insertions 0 ; deletions 0
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local splice5 218429 218430 . + . intron_id 3 ; splice_site "GT"
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local intron 218429 223274 . + . intron_id 3
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local splice3 223273 223274 . + . intron_id 2 ; splice_site "AG"
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local cds 223275 223880 . + .
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local exon 223275 223880 . + . insertions 18 ; deletions 0
gi|472267375|gb|KB717282.1| exonerate:protein2genome:local similarity 215849 223880 1359 + . alignment_id 1 ; Query SPP00000082_2.0 ; Align 215849 1 201 ; Align 216815 69 210 ; Align 218312 140 117 ; Align 223275 179 96 ; Align 223374 211 6 ; Align 223386 213 159 ; Align 223548 266 15 ; Align 223569 271 312
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis