Command line: [exonerate -m p2g --showtargetgff -q ./SelP.fa -t SelP.carpeta/genomic.fa]
Hostname: [ws101095]

C4 Alignment:
------------
         Query: SPP00000082_2.0 # Protein # Selenoprotein P (SelP) # Human (Homo sapiens)
        Target: gi|472267375|gb|KB717282.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02576, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1359
   Query range: 0 -> 374
  Target range: 215848 -> 223880

      1 : MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProSerGlyGlyThrG :     20
          |||||||||||||||||||||||||||||||||||||||||||||!!!||||||.!!|
          MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProTrpGlyGlyAlaG
 215849 : ATGTGGAGAAGCCTGGGGCTTGCCCTGGCTCTCTGTCTTCTCCCATGGGGAGGAGCAG : 215906

     21 : luSerGlnAspGlnSerSerLeuCysLysGlnProProAlaTrpSerIleArgAspGl :     39
          ||||||||!!:|||||||||!!!||||||||||||||||||||||||||| !!|||||
          luSerGlnGluGlnSerSerPheCysLysGlnProProAlaTrpSerIleGlyAspGl
 215907 : AGAGCCAGGAACAAAGCTCCTTCTGTAAGCAGCCTCCAGCCTGGAGCATAGGAGATCA : 215963

     40 : nAspProMetLeuAsnSerAsnGlySerValThrValValAlaLeuLeuGlnAlaSer :     58
          |:!!|||||||||||||||!:!||||||||||||||||||:!!|||||||||||||||
          nAsnProMetLeuAsnSerSerGlySerValThrValValSerLeuLeuGlnAlaSer
 215964 : AAATCCAATGCTGAACTCAAGTGGTTCGGTAACAGTGGTGTCCCTTCTTCAAGCCAGC : 216020

     59 : UnkTyrLeuCysIleLeuGlnAlaSer{Ly}  >>>> Target Intron 1 >>>> :     68
             ||||||||||||||||||||||||{!:}            762 bp         
          ***TyrLeuCysIleLeuGlnAlaSer{Ar}++                         
 216021 : TGATACCTGTGCATTCTGCAGGCATCC{AG}gt......................... : 216054

     69 :   {s}LeuGluAspLeuArgValLysLeuLysLysGluGlyTyrSerAsnIleSerTy :     86
            {!}||||||||||||||||||||||||:!!||||||||||||! !|||||||||||
          ++{g}LeuGluAspLeuArgValLysLeuGluLysGluGlyTyrLeuAsnIleSerTy
 216055 : ag{A}TTGGAAGACCTGCGAGTAAAACTGGAGAAAGAAGGATATTTGAACATCTCTTA : 216866

     87 : rIleValValAsnHisGlnGlyIleSerSerArgLeuLysTyrThrHisLeuLysAsn :    105
          |:!!||||||||||||||||||:!!||||||!:!|||||||||! !||||||||||||
          rValValValAsnHisGlnGlyLeuSerSerGlnLeuLysTyrMetHisLeuLysAsn
 216867 : TGTTGTTGTTAATCATCAAGGACTTTCTTCTCAATTAAAATATATGCATCTTAAAAAT : 216923

    106 : LysValSerGluHisIleProValTyrGlnGlnGluGluAsnGlnThrAspValTrpT :    125
          ||||||||||||:!!||||||||||||||||||||||||||||||||||||||||||!
          LysValSerGluTyrIleProValTyrGlnGlnGluGluAsnGlnThrAspValTrpM
 216924 : AAGGTTTCAGAGTATATTCCTGTTTATCAACAAGAAGAAAACCAAACAGATGTCTGGA : 216983

    126 : hrLeuLeuAsnGlySerLysAspAspPheLeuIleTyrAsp{Ar}  >>>> Target :    139
           !||||||||||||!.!||||||||||||||||||||||||{||}           12
          etLeuLeuAsnGlyLysLysAspAspPheLeuIleTyrAsp{Ar}++           
 216984 : TGCTGTTAAATGGGAAAAAGGATGACTTCCTCATATATGAC{AG}gt........... : 217029

    140 :  Intron 2 >>>>  {g}CysGlyArgLeuValTyrHisLeuGlyLeuProPheSer :    152
          84 bp           {|}|||||||||||||||||||||||||||||||||!:!|||
                        ++{g}CysGlyArgLeuValTyrHisLeuGlyLeuProTyrSer
 217030 : ..............ag{A}TGTGGCCGTCTTGTATACCATCTTGGTTTGCCTTACTCC : 218348

    153 : PheLeuThrPheProTyrValGluGluAlaIleLysIleAlaTyrCysGluLysLysC :    172
          ||||||||||||||||||||||||||||||||||||.!!.!!||||||:!!:!!||||
          PheLeuThrPheProTyrValGluGluAlaIleLysPheThrTyrCysLysGluLysC
 218349 : TTTCTAACTTTCCCATATGTAGAAGAAGCCATTAAATTTACTTACTGTAAAGAGAAAT : 218408

    173 : ysGlyAsnCysSerLeuThr  >>>> Target Intron 3 >>>>  ThrLeuLys :    181
          |||||:!!|||||||||! !           4846 bp           ||||||:!!
          ysGlyHisCysSerLeuMet++                         ++ThrLeuGlu
 218409 : GTGGACACTGCTCTCTCATGgt.........................agACCCTGGAA : 223281

    182 : AspGluAspPheCysLysArgValSerLeuAlaThrValAspLysThrValGluThrP :    201
          ! !! !|||  !||||||! !||||||! !|||||||||!  !!.|||..!|||.!!|
          AlaAlaAspHisCysLysMetValSerSerAlaThrValGlyAsnThrThrGluAlaP
 223282 : GCTGCAGACCACTGTAAAATGGTATCTTCGGCTACTGTGGGAAACACAACTGAGGCTC : 223341

    202 : roSerProHisTyrHisHisGluHisHis<->HisAsn<-><->HisGlyHisGlnHi :    217
          ||..!||||||:!!||||||.!.||||||   |||:!!      |||! !||||||||
          roGlnProHisHisHisHisHisHisHisGlyHisHisLeuLysHisGluHisGlnHi
 223342 : CCCAGCCACATCACCACCACCACCACCATGGTCATCATCTCAAGCATGAGCATCAGCA : 223398

    218 : sLeuGlySerSerGluLeuSerGluAsnGlnGlnProGlyAlaProAsnAlaProThr :    236
          |! !|||! !..!! !:!!||||||||||||||||||! !||||||:!!||| !!  !
          sHisGlyIleAspGlyValSerGluAsnGlnGlnProGluAlaProAspAlaAlaGlu
 223399 : TCATGGGATTGATGGGGTTTCAGAGAATCAGCAACCAGAAGCCCCAGATGCGGCTGAG : 223455

    237 : HisProAlaProProGlyLeuHisHisHisHisLysHisLysGlyGlnHisArgGlnG :    256
          ||||||.!!|||  !|||||||||||||||||||||||||||..!!!.!!.|||||||
          HisProThrPro***GlyLeuHisHisHisHisLysHisLysAsnHisGlnArgGlnG
 223456 : CATCCCACTCCTTGAGGCCTCCATCACCACCATAAGCACAAGAACCACCAAAGACAGG : 223515

    257 : lyHisProGluAsnArgAspMetProAla<->SerGluAspLeuGln<-><->AspLe :    272
          |||||||||||!.! !!|||:!!||||||   ||||||..!||||||      ! !! 
          lyHisProGluThr***AspLeuProAlaGlySerGluSerLeuGlnLeuSerValPr
 223516 : GCCACCCAGAGACCTGAGATCTGCCAGCAGGAAGTGAAAGTTTACAACTTTCTGTTCC : 223572

    273 : uGlnLysLysLeuCysArgLysArgCysIleAsnGlnLeuLeuCysLysLeuProThr :    291
          !|||!:!!:!|||!!  !!||| !!||||||||||||||||||||||||||||||! !
          oGlnArgArgLeu******LysGlyCysIleAsnGlnLeuLeuCysLysLeuProLys
 223573 : ACAGAGGAGGCTCTGATGAAAGGGATGTATAAATCAATTACTCTGCAAATTGCCTAAA : 223629

    292 : AspSerGluLeuAlaProArgSerUnkCysCysHisCysArgHisLeuIlePheGluL :    311
          ||||||! !|||||||||!.!|||   |||!! |||!! |||||||||||||||||||
          AspSerGlyLeuAlaProAsnSerCysCys***His***ArgHisLeuIlePheGluL
 223630 : GATTCAGGGTTGGCCCCTAACAGCTGTTGCTGACACTGACGACATCTGATATTTGAAA : 223689

    312 : ysThrGlySerAlaIleThrUnkGlnCysLysGluAsnLeuProSerLeuCysSerUn :    330
          ||||||||||||||||||||   ||||||||||||!.!||||||||||||||||||  
          ysThrGlySerAlaIleThr***GlnCysLysGluThrLeuProSerLeuCysSer**
 223690 : AAACAGGGTCTGCAATCACCTGACAATGTAAAGAAACCCTCCCCTCTTTATGCAGCTG : 223746

    331 : kGlnGlyLeuArgAlaGluGluAsnIleThrGluSerCysGlnUnkArgLeuProPro :    349
           ||||||||| !!||||||||||||:!!! !||||||!! |||   ||||||||||||
          *GlnGlyLeuTrpAlaGluGluAsnValIleGluSer***Gln***ArgLeuProPro
 223747 : ACAGGGACTTTGGGCAGAGGAGAACGTCATTGAATCTTGACAGTGACGTTTGCCTCCG : 223803

    350 : AlaAlaUnkGlnIleSerGlnGlnLeuIleProThrGluAlaSerAlaSerUnkArgU :    369
          ||||||   |||  !||||||||||||   |||||||||||||||||||||   !!! 
          AlaAla***GlnAlaSerGlnGlnLeuGlnProThrGluAlaSerAlaSer***Ser*
 223804 : GCTGCCTGACAAGCAAGTCAGCAGCTTCAGCCCACAGAAGCCAGCGCCAGTTGAAGCT : 223863

    370 : nkLysAsnGlnAlaLys :    374
            |||:!!:!!||||||
          **LysHisLysAlaLys
 223864 : GAAAACATAAGGCCAAA : 223880

vulgar: SPP00000082_2.0 0 374 . gi|472267375|gb|KB717282.1| 215848 223880 + 1359 M 67 201 S 0 2 5 0 2 I 0 758 3 0 2 S 1 1 M 70 210 S 0 2 5 0 2 I 0 1280 3 0 2 S 1 1 M 39 117 5 0 2 I 0 4842 3 0 2 M 32 96 G 0 3 M 2 6 G 0 6 M 53 159 G 0 3 M 5 15 G 0 6 M 104 312
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	gene	215849	223880	1359	+	.	gene_id 1 ; sequence SPP00000082_2.0 ; gene_orientation +
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	cds	215849	216051	.	+	.	
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	exon	215849	216051	.	+	.	insertions 0 ; deletions 0
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	splice5	216052	216053	.	+	.	intron_id 1 ; splice_site "GT"
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	intron	216052	216813	.	+	.	intron_id 1
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	splice3	216812	216813	.	+	.	intron_id 0 ; splice_site "AG"
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	cds	216814	217026	.	+	.	
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	exon	216814	217026	.	+	.	insertions 0 ; deletions 0
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	splice5	217027	217028	.	+	.	intron_id 2 ; splice_site "GT"
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	intron	217027	218310	.	+	.	intron_id 2
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	splice3	218309	218310	.	+	.	intron_id 1 ; splice_site "AG"
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	cds	218311	218428	.	+	.	
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	exon	218311	218428	.	+	.	insertions 0 ; deletions 0
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	splice5	218429	218430	.	+	.	intron_id 3 ; splice_site "GT"
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	intron	218429	223274	.	+	.	intron_id 3
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	splice3	223273	223274	.	+	.	intron_id 2 ; splice_site "AG"
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	cds	223275	223880	.	+	.	
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	exon	223275	223880	.	+	.	insertions 18 ; deletions 0
gi|472267375|gb|KB717282.1|	exonerate:protein2genome:local	similarity	215849	223880	1359	+	.	alignment_id 1 ; Query SPP00000082_2.0 ; Align 215849 1 201 ; Align 216815 69 210 ; Align 218312 140 117 ; Align 223275 179 96 ; Align 223374 211 6 ; Align 223386 213 159 ; Align 223548 266 15 ; Align 223569 271 312
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis