TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000082_2.0 # Protein # Selenoprotein P (SelP) # Human
(Homo sapiens)
         (381 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472267375|gb|KB717282.1| Leptonychotes weddellii isolate WS11...   158   6e-37
gi|472269059|gb|KB715598.1| Leptonychotes weddellii isolate WS11...    35   8.2  

>gi|472267375|gb|KB717282.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold02576, whole genome
              shotgun sequence
          Length = 370331

 Score =  158 bits (399), Expect = 6e-37
 Identities = 103/202 (50%), Positives = 113/202 (55%), Gaps = 6/202 (2%)
 Frame = +3

Query: 179    TLKDEDFCKRVSLATVDKTVETPSPXXXXXXXXXXXXXXL---GSSELSENQQPGAPNXX 235
              TL+  D CK VS ATV  T E P P                  G   +SENQQP AP+  
Sbjct: 223275 TLEAADHCKMVSSATVGNTTEAPQPHHHHHHHGHHLKHEHQHHGIDGVSENQQPEAPDAA 223454

Query: 236    XXXXXXXXXXXXXXXXXXXXXXXENRDMPASEDLQDL---QKKLCRKRCINQLLCKLPTD 292
                                     E  D+PA  +   L   Q++L  K CINQLLCKLP D
Sbjct: 223455 EHPTP*GLHHHHKHKNHQRQGHPET*DLPAGSESLQLSVPQRRL**KGCINQLLCKLPKD 223634

Query: 293    SELAPRSXCCHCRHLIFEKTGSAITXQCKENLPSLCSXQGLRAEENITESCQXRLPPAAX 352
              S LAP S C H RHLIFEKTGSAIT QCKE LPSLCS QGL AEEN+ ES Q RLPPAA 
Sbjct: 223635 SGLAPNSCC*H*RHLIFEKTGSAIT*QCKETLPSLCS*QGLWAEENVIES*Q*RLPPAA* 223814

Query: 353    QISQQLIPTEASASXRXKNQAK 374
              Q SQQL PTEASAS   K++AK
Sbjct: 223815 QASQQLQPTEASAS*S*KHKAK 223880



 Score =  136 bits (343), Expect = 2e-30
 Identities = 63/73 (86%), Positives = 69/73 (94%)
 Frame = +2

Query: 68     KLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLL 127
              +LEDLRVKL+KEGY NISY+VVNHQG+SS+LKY HLKNKVSE+IPVYQQEENQTDVW LL
Sbjct: 216812 RLEDLRVKLEKEGYLNISYVVVNHQGLSSQLKYMHLKNKVSEYIPVYQQEENQTDVWMLL 216991

Query: 128    NGSKDDFLIYDRC 140
              NG KDDFLIYDRC
Sbjct: 216992 NGKKDDFLIYDRC 217030



 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 49/70 (70%), Positives = 54/70 (77%)
 Frame = +2

Query: 1      MWRSXXXXXXXXXXPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASXY 60
              MWRS          P GG ESQ+QSS CKQPPAWSI DQ+PMLNS+GSVTVV+LLQAS Y
Sbjct: 215849 MWRSLGLALALCLLPWGGAESQEQSSFCKQPPAWSIGDQNPMLNSSGSVTVVSLLQAS*Y 216028

Query: 61     LCILQASKLE 70
              LCILQAS+ E
Sbjct: 216029 LCILQASR*E 216058



 Score = 79.3 bits (194), Expect = 4e-13
 Identities = 33/39 (84%), Positives = 37/39 (94%)
 Frame = +2

Query: 139    RCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSL 177
              RCGRLVYHLGLP+SFLTFPYVEEAIK  YC++KCG+CSL
Sbjct: 218309 RCGRLVYHLGLPYSFLTFPYVEEAIKFTYCKEKCGHCSL 218425


>gi|472269059|gb|KB715598.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold00892, whole genome
             shotgun sequence
          Length = 851605

 Score = 35.0 bits (79), Expect = 8.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 271   DLQKKLCRKRCINQLLCKLPTDSELAPRSXCC 302
             D Q +LCRK+ ++ LL  LP D  L P   CC
Sbjct: 98535 DWQSELCRKQALDDLLWPLPDDLSLTP*PFCC 98630


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.315    0.130    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,349,890,278
Number of Sequences: 16710
Number of extensions: 19787321
Number of successful extensions: 81638
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 368
Number of HSP's that attempted gapping in prelim test: 76815
Number of HSP's gapped (non-prelim): 14730
length of query: 381
length of database: 1,052,295,386
effective HSP length: 134
effective length of query: 247
effective length of database: 1,050,056,246
effective search space: 259363892762
effective search space used: 259363892762
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)