Command line: [exonerate -m p2g --showtargetgff -q ./SelO_walrus.fa -t SelO_walrus.carpeta/genomic.fa]
Hostname: [ws101071]
C4 Alignment:
------------
Query: SPP00000081_2.0 # Protein # Selenoprotein O (SelO) # Walrus (Odobenus rosmarus)
Target: gi|472269310|gb|KB715347.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00641, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 2705
Query range: 136 -> 681
Target range: 606746 -> 593955
137 : AlaLeuLeuProGlyAlaGluProAlaAlaHisCysTyrCysGlyHisGlnPheGlyG : 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AlaLeuLeuProGlyAlaGluProAlaAlaHisCysTyrCysGlyHisGlnPheGlyG
606746 : GCGCTGCTGCCGGGCGCCGAGCCCGCCGCGCACTGCTACTGCGGCCACCAGTTTGGCC : 606689
157 : lnPheAlaGlyGlnLeuGlyAspGlyAlaAlaMetTyrLeuGlyGluValCysThrAl : 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
lnPheAlaGlyGlnLeuGlyAspGlyAlaAlaMetTyrLeuGlyGluValCysThrAl
606688 : AGTTCGCGGGGCAGCTGGGCGACGGCGCCGCCATGTACCTGGGCGAGGTGTGCACGGC : 606632
176 : aAlaGlyGluArgTrpGluLeuGlnLeuLysGlyAlaGlyProThrProPheSer{Ar : 194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||{||
aAlaGlyGluArgTrpGluLeuGlnLeuLysGlyAlaGlyProThrProPheSer{Ar
606631 : CGCCGGCGAGCGCTGGGAGCTGCAGCTCAAGGGCGCCGGCCCCACGCCCTTCTCC{AG : 606575
195 : } >>>> Target Intron 1 >>>> {g}GlnAlaAspGlyArgLysValLeuA : 203
} 4555 bp {|}|||||||||||||||||||||||||
}++ ++{g}GlnAlaAspGlyArgLysValLeuA
606574 : }gt.........................ag{A}CAGGCCGACGGCCGCAAAGTCCTGC : 601993
204 : rgSerSerIleArgGluPheLeuCysSerGluAlaMetPheHisLeuGlyIleProTh : 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rgSerSerIleArgGluPheLeuCysSerGluAlaMetPheHisLeuGlyIleProTh
601992 : GGTCGAGCATCCGCGAGTTCCTGTGCAGCGAAGCAATGTTCCACCTGGGCATCCCCAC : 601936
223 : rThrArgAlaGlyAlaCysValThrSerGlnSerThrValValArgAspValPheTyr : 241
||||||||||||||||||||||||||||||||||||||||:::|||||||||||||||
rThrArgAlaGlyAlaCysValThrSerGlnSerThrValIleArgAspValPheTyr
601935 : CACGCGGGCCGGGGCCTGCGTCACGTCCCAGTCCACAGTCATTCGAGACGTCTTCTAT : 601879
242 : AspGlyAsnProLysTyrGluLysCysThrValValLeuArgIleAlaSerThrPheL : 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AspGlyAsnProLysTyrGluLysCysThrValValLeuArgIleAlaSerThrPheL
601878 : GATGGTAATCCAAAATATGAGAAGTGCACAGTTGTGCTGCGCATAGCTTCCACTTTTC : 601819
262 : eu{Ar} >>>> Target Intron 2 >>>> {g}PheGlySerPheGluIlePh : 269
||{||} 1617 bp {|}||||||||||||||||||||
eu{Ar}++ ++{g}PheGlySerPheGluIlePh
601818 : TA{AG}gt.........................ag{G}TTCGGATCCTTTGAGATTTT : 600178
270 : eLysSerAlaAspGluHisThrGlyArgGluGlyProSerValGlyArgAsnAspIle : 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
eLysSerAlaAspGluHisThrGlyArgGluGlyProSerValGlyArgAsnAspIle
600177 : TAAGTCTGCAGATGAGCACACAGGGCGTGAAGGGCCCAGTGTGGGGAGAAATGACATC : 600121
289 : ArgValGlnMetLeuAspTyrValIleSerThrPheTyrProGluIleGlnAlaAlaH : 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ArgValGlnMetLeuAspTyrValIleSerThrPheTyrProGluIleGlnAlaAlaH
600120 : CGAGTCCAGATGCTTGACTATGTGATCAGCACGTTTTATCCTGAGATCCAGGCCGCGC : 600061
309 : isAlaAsnAspArgValGlnArgAsnAlaAlaPhePheArgGlu >>>> Target : 323
|||||:::|||||||||||||||||||||||||||||||||||| 62
isAlaAspAspArgValGlnArgAsnAlaAlaPhePheArgGlu++
600060 : ACGCGGATGACCGTGTGCAGAGGAATGCCGCCTTCTTCCGGGAGgt............ : 600014
324 : Intron 3 >>>> ValThrArgArgThrAlaArgMetValAlaGluTrpGlnCysV : 337
8 bp |||||||||||||||||||||||||||||||||||||||||||
++ValThrArgArgThrAlaArgMetValAlaGluTrpGlnCysV
600013 : .............agGTGACCCGTCGCACGGCCCGGATGGTGGCGGAGTGGCAGTGTG : 599346
338 : alGlyPheCysHisGlyValLeuAsnThrAspAsnMetSerIleValGlyLeuThrIl : 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
alGlyPheCysHisGlyValLeuAsnThrAspAsnMetSerIleValGlyLeuThrIl
599345 : TGGGCTTCTGCCACGGCGTGCTCAACACAGACAACATGAGCATCGTGGGGCTCACCAT : 599289
357 : eAspTyrGlyProPheGlyPheLeuAsp{Ar} >>>> Target Intron 4 >>> : 366
||||||||||||||||||||||||||||{||} 422 bp
eAspTyrGlyProPheGlyPheLeuAsp{Ar}++
599288 : CGACTACGGGCCCTTCGGCTTCCTGGAC{AG}gt........................ : 599255
367 : > {g}TyrAspProAspHisValCysAsnAlaSerAspAsnAlaGlyArgTyrAlaT : 384
{|}||||||||||||||||||||||||||||||||||||...|||||||||||||
++{g}TyrAspProAspHisValCysAsnAlaSerAspAsnThrGlyArgTyrAlaT
599254 : .ag{G}TACGACCCTGACCACGTGTGCAATGCTTCCGACAACACTGGGCGCTACGCAT : 598783
385 : yrSerLysGlnProGluValCysLysTrpAsnLeuGlnLysLeuValGluAlaLeuGl : 403
||||||||||||||:::|||||||||||||||||||||||||||...|||||||||||
yrSerLysGlnProAspValCysLysTrpAsnLeuGlnLysLeuAlaGluAlaLeuGl
598782 : ACAGCAAGCAGCCCGACGTTTGCAAGTGGAACCTGCAGAAGCTGGCGGAGGCCCTGGA : 598726
404 : uProGluLeuProArgGluGlnGlyGluAlaIleLeuAlaGluGluPheAspProGlu : 422
|||||||||||||||||||:::||||||...|||||||||||||||||||||||||||
uProGluLeuProArgGluArgGlyGluThrIleLeuAlaGluGluPheAspProGlu
598725 : GCCCGAGCTGCCCCGCGAGCGGGGCGAGACCATCCTGGCCGAGGAGTTCGACCCGGAG : 598669
423 : PheArgGlnHisTyrLeuGlnLysMetArgArgLysLeuGlyLeuValHisAlaGluL : 442
||||||||||||||||||||||||||||||||||||||||||||||||...|||||||
PheArgGlnHisTyrLeuGlnLysMetArgArgLysLeuGlyLeuValArgAlaGluL
598668 : TTCCGCCAGCACTACCTGCAGAAGATGCGCAGGAAGCTGGGCCTGGTGCGCGCCGAGC : 598609
443 : euAspGluAspGlyAlaLeuValAlaLysLeuLeuGluThrMetHisLeuThr{G} : 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||{|}
euAspGluAspGlyAlaLeuValAlaLysLeuLeuGluThrMetHisLeuThr{G}++
598608 : TGGACGAGGACGGGGCGCTGGTGGCCAAGCTCCTGGAGACCATGCACCTGACT{G}gt : 598554
461 : >>>> Target Intron 5 >>>> {ly}AlaAspPheThrAsnThrPheTyrLeu : 469
2877 bp {||}|||||||||||||||||||||||||||
++{ly}AlaAspPheThrAsnThrPheTyrLeu
598553 : .........................ag{GG}GCCGACTTCACAAACACCTTCTACTTG : 595651
470 : LeuSerSerPheProValGlyProGluSerLeuGlyLeuProGluPheLeuAlaAlaL : 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LeuSerSerPheProValGlyProGluSerLeuGlyLeuProGluPheLeuAlaAlaL
595650 : CTGAGCTCCTTCCCAGTTGGGCCAGAGTCCCTGGGCCTGCCTGAGTTCCTGGCCGCGC : 595591
490 : euThrAlaGlnCysAlaSerLeuGluGluLeuLysLeuAlaPheArgProGlnMetAs : 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
euThrAlaGlnCysAlaSerLeuGluGluLeuLysLeuAlaPheArgProGlnMetAs
595590 : TGACCGCACAGTGTGCCTCCCTGGAGGAGCTGAAGCTCGCCTTCCGACCCCAGATGGA : 595534
509 : pPro{Ar} >>>> Target Intron 6 >>>> {g}GlnLeuSerMetMetLeu : 516
||||{||} 807 bp {|}||||||||||||||||||
pPro{Ar}++ ++{g}GlnLeuSerMetMetLeu
595533 : TCCC{CG}gt.........................ag{G}CAGCTCTCGATGATGCTG : 594703
517 : MetLeuAlaGlnSerAsnProGlnLeuPheAlaLeuIleGlyThrArgAlaAsnValT : 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MetLeuAlaGlnSerAsnProGlnLeuPheAlaLeuIleGlyThrArgAlaAsnValT
594702 : ATGCTGGCACAGTCCAACCCCCAGCTCTTCGCGCTCATCGGCACCCGGGCGAACGTGA : 594643
537 : hrLysGluLeuGluArgValGluGlnHisSerArgLeuGluGlnLeuSerProAlaGl : 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
hrLysGluLeuGluArgValGluGlnHisSerArgLeuGluGlnLeuSerProAlaGl
594642 : CGAAGGAGCTAGAACGCGTGGAGCAGCATTCGCGGCTGGAGCAGCTGAGCCCGGCTGA : 594586
556 : uLeuLeuSerLysAsnArgGlyHisTrpAlaAspTrpLeuGlnAlaTyr{Ar} >>> : 572
||||||||||||||||||||||||||||||||||||||||||| |||{ }
uLeuLeuSerLysAsnArgGlyHisTrpAlaAspTrpLeuGlnGluTyr{Gl}++
594585 : GCTGCTGAGCAAGAACAGGGGCCACTGGGCTGACTGGCTCCAGGAGTAT{GG}gt... : 594531
573 : > Target Intron 7 >>>> {g}ThrArgLeuGluLysAspArgGluGlyValS : 583
147 bp { }...||||||||||||||||||||||||||||
++{y}AlaArgLeuGluLysAspArgGluGlyValS
594530 : ......................ag{A}GCCCGGCTGGAGAAGGACAGGGAGGGCGTCA : 594355
584 : erAspGluAspAlaTrpGlnAlaGluArgThrArgValMetHisAlaAsnAsnProLy : 602
|||||:::||||||||||||||||||||||||||||||||||||||||||||||||||
erAspLysAspAlaTrpGlnAlaGluArgThrArgValMetHisAlaAsnAsnProLy
594354 : GCGACAAGGATGCCTGGCAGGCTGAGCGCACGCGCGTCATGCATGCCAACAACCCCAA : 594298
603 : sTyrValLeuArgAsnTyrIleAlaGlnAsnAlaIleGluAlaAlaGluAsnGlyAsp : 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
sTyrValLeuArgAsnTyrIleAlaGlnAsnAlaIleGluAlaAlaGluAsnGlyAsp
594297 : GTACGTCCTGCGGAACTACATCGCCCAGAATGCCATCGAGGCCGCCGAGAACGGAGAC : 594241
622 : PheSerGlu >>>> Target Intron 8 >>>> ValArgArgValLeuLysLe : 631
||||||||| 103 bp ||||||||||||||||||||
PheSerGlu+- ++ValArgArgValLeuLysLe
594240 : TTCTCAGAGgc.........................agGTGCGGCGGGTGCTGAAGCT : 594108
632 : uLeuGluThrProTyrHisArgAspGlyGluAlaThrGluValProGluAlaThrGlu : 650
|||||||||||||||||||||||||||||||||||||||| ||||||||||||
uLeuGluThrProTyrHisArgAspGlyGluAlaThrGluAspLeuGluAlaThrGlu
594107 : ACTGGAAACCCCTTACCACAGGGACGGGGAGGCCACCGAGGACCTGGAGGCCACTGAG : 594051
651 : ProGluGlyAlaAspGlyAlaAspSerGlyGlyHisSerTyrSerSerLysProProL : 670
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
ProGluGlyAlaGlyGlyAlaAspSerGlyGlyHisSerTyrSerSerLysProProL
594050 : CCTGAGGGGGCTGGCGGGGCAGACAGTGGGGGGCACTCCTACAGCAGCAAGCCCCCAC : 593991
671 : euTrpAlaAlaGluLeuCysValThrUnkSerSer : 681
|||||||||||||||||||||||||| ||||||
euTrpAlaAlaGluLeuCysValThr***SerSer
593990 : TGTGGGCAGCCGAACTGTGCGTGACGTGATCCTCG : 593956
vulgar: SPP00000081_2.0 136 681 . gi|472269310|gb|KB715347.1| 606746 593955 - 2705 M 57 171 S 0 2 5 0 2 I 0 4551 3 0 2 S 1 1 M 67 201 S 0 2 5 0 2 I 0 1613 3 0 2 S 1 1 M 60 180 5 0 2 I 0 624 3 0 2 M 43 129 S 0 2 5 0 2 I 0 418 3 0 2 S 1 1 M 93 279 S 0 1 5 0 2 I 0 2873 3 0 2 S 1 2 M 49 147 S 0 2 5 0 2 I 0 803 3 0 2 S 1 1 M 61 183 S 0 2 5 0 2 I 0 143 3 0 2 S 1 1 M 52 156 5 0 2 I 0 99 3 0 2 M 57 171
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local gene 593956 606746 2705 - . gene_id 1 ; sequence SPP00000081_2.0 ; gene_orientation +
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 606574 606746 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 606574 606746 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 606572 606573 . - . intron_id 1 ; splice_site "GT"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 602019 606573 . - . intron_id 1
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 602019 602020 . - . intron_id 0 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 601815 602018 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 601815 602018 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 601813 601814 . - . intron_id 2 ; splice_site "GT"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 600198 601814 . - . intron_id 2
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 600198 600199 . - . intron_id 1 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 600017 600197 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 600017 600197 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 600015 600016 . - . intron_id 3 ; splice_site "GT"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 599389 600016 . - . intron_id 3
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 599389 599390 . - . intron_id 2 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 599258 599388 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 599258 599388 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 599256 599257 . - . intron_id 4 ; splice_site "GT"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 598836 599257 . - . intron_id 4
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 598836 598837 . - . intron_id 3 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 598555 598835 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 598555 598835 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 598553 598554 . - . intron_id 5 ; splice_site "GT"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 595678 598554 . - . intron_id 5
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 595678 595679 . - . intron_id 4 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 595527 595677 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 595527 595677 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 595525 595526 . - . intron_id 6 ; splice_site "GT"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 594720 595526 . - . intron_id 6
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 594720 594721 . - . intron_id 5 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 594534 594719 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 594534 594719 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 594532 594533 . - . intron_id 7 ; splice_site "GT"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 594387 594533 . - . intron_id 7
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 594387 594388 . - . intron_id 6 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 594230 594386 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 594230 594386 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 594228 594229 . - . intron_id 8 ; splice_site "GC"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 594127 594229 . - . intron_id 8
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 594127 594128 . - . intron_id 7 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 593956 594126 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 593956 594126 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local similarity 593956 606746 2705 - . alignment_id 1 ; Query SPP00000081_2.0 ; Align 606747 137 171 ; Align 602018 195 201 ; Align 600197 263 180 ; Align 599389 323 129 ; Align 598835 367 279 ; Align 595676 461 147 ; Align 594719 511 183 ; Align 594386 573 156 ; Align 594127 625 171
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis