TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000081_2.0 # Protein # Selenoprotein O (SelO) # Walrus
(Odobenus rosmarus)
         (681 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472269310|gb|KB715347.1| Leptonychotes weddellii isolate WS11...   206   3e-69
gi|472267791|gb|KB716866.1| Leptonychotes weddellii isolate WS11...    74   5e-11
gi|472269944|gb|KB714745.1| Leptonychotes weddellii isolate WS11...    53   6e-05
gi|472263686|gb|KB720971.1| Leptonychotes weddellii isolate WS11...    49   0.001

>gi|472269310|gb|KB715347.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00641, whole genome
              shotgun sequence
          Length = 1161464

 Score =  206 bits (525), Expect(2) = 3e-69
 Identities = 115/172 (66%), Positives = 116/172 (67%), Gaps = 49/172 (28%)
 Frame = -2

Query: 510    RQLSMMLMLAQSNPQLFALIGTRANVTKELERVEQHSRLEQLSPAELLSKNRGHWADWLQ 569
              RQLSMMLMLAQSNPQLFALIGTRANVTKELERVEQHSRLEQLSPAELLSKNRGHWADWLQ
Sbjct: 594721 RQLSMMLMLAQSNPQLFALIGTRANVTKELERVEQHSRLEQLSPAELLSKNRGHWADWLQ 594542

Query: 570    AY-------------------------------------------------RTRLEKDRE 580
               Y                                                 R RLEKDRE
Sbjct: 594541 EYG*GSRRPGADCSRHPLPGRWLQTTPPKQGTKCRRGGGVAPAGKMNLDDSRARLEKDRE 594362

Query: 581    GVSDEDAWQAERTRVMHANNPKYVLRNYIAQNAIEAAENGDFSEVRRVLKLL 632
              GVSD+DAWQAERTRVMHANNPKYVLRNYIAQNAIEAAENGDFSE    L LL
Sbjct: 594361 GVSDKDAWQAERTRVMHANNPKYVLRNYIAQNAIEAAENGDFSEASTRLSLL 594206



 Score =  189 bits (479), Expect = 7e-46
 Identities = 90/101 (89%), Positives = 92/101 (91%)
 Frame = -2

Query: 360    PFGFLDRYDPDHVCNASDNAGRYAYSKQPEVCKWNLQKLVEALEPELPREQGEAILAEEF 419
              P     RYDPDHVCNASDN GRYAYSKQP+VCKWNLQKL EALEPELPRE+GE ILAEEF
Sbjct: 598855 PLAPCGRYDPDHVCNASDNTGRYAYSKQPDVCKWNLQKLAEALEPELPRERGETILAEEF 598676

Query: 420    DPEFRQHYLQKMRRKLGLVHAELDEDGALVAKLLETMHLTG 460
              DPEFRQHYLQKMRRKLGLV AELDEDGALVAKLLETMHLTG
Sbjct: 598675 DPEFRQHYLQKMRRKLGLVRAELDEDGALVAKLLETMHLTG 598553



 Score =  140 bits (353), Expect = 3e-31
 Identities = 68/69 (98%), Positives = 69/69 (100%)
 Frame = -2

Query: 194    RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVVRDVFYDGNPKYEKCTVV 253
              RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTV+RDVFYDGNPKYEKCTVV
Sbjct: 602020 RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVIRDVFYDGNPKYEKCTVV 601841

Query: 254    LRIASTFLR 262
              LRIASTFLR
Sbjct: 601840 LRIASTFLR 601814



 Score =  128 bits (322), Expect = 1e-27
 Identities = 58/58 (100%), Positives = 58/58 (100%)
 Frame = -1

Query: 137    ALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSR 194
              ALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSR
Sbjct: 606746 ALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSR 606573



 Score =  126 bits (316), Expect = 6e-27
 Identities = 61/62 (98%), Positives = 62/62 (100%)
 Frame = -2

Query: 262    RFGSFEIFKSADEHTGREGPSVGRNDIRVQMLDYVISTFYPEIQAAHANDRVQRNAAFFR 321
              RFGSFEIFKSADEHTGREGPSVGRNDIRVQMLDYVISTFYPEIQAAHA+DRVQRNAAFFR
Sbjct: 600199 RFGSFEIFKSADEHTGREGPSVGRNDIRVQMLDYVISTFYPEIQAAHADDRVQRNAAFFR 600020

Query: 322    EV 323
              EV
Sbjct: 600019 EV 600014



 Score =  106 bits (265), Expect = 5e-21
 Identities = 52/57 (91%), Positives = 53/57 (92%)
 Frame = -2

Query: 454    ETMHLTGADFTNTFYLLSSFPVGPESLGLPEFLAALTAQCASLEELKLAFRPQMDPR 510
              E   + GADFTNTFYLLSSFPVGPESLGLPEFLAALTAQCASLEELKLAFRPQMDPR
Sbjct: 595696 EQRRVPGADFTNTFYLLSSFPVGPESLGLPEFLAALTAQCASLEELKLAFRPQMDPR 595526



 Score = 98.2 bits (243), Expect = 2e-18
 Identities = 44/45 (97%), Positives = 45/45 (100%)
 Frame = -3

Query: 322    EVTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDR 366
              +VTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDR
Sbjct: 599391 QVTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDR 599257



 Score = 82.0 bits (201), Expect(2) = 3e-69
 Identities = 41/58 (70%), Positives = 42/58 (72%)
 Frame = -3

Query: 624    EVRRVLKLLETPYHRDXXXXXXXXXXXXXXADGADSGGHSYSSKPPLWAAELCVTXSS 681
              +VRRVLKLLETPYHRD              A GADSGGHSYSSKPPLWAAELCVT SS
Sbjct: 594129 QVRRVLKLLETPYHRDGEATEDLEATEPEGAGGADSGGHSYSSKPPLWAAELCVT*SS 593956


>gi|472267791|gb|KB716866.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold02160, whole genome
              shotgun sequence
          Length = 521749

 Score = 73.6 bits (179), Expect = 5e-11
 Identities = 51/131 (38%), Positives = 58/131 (44%), Gaps = 59/131 (45%)
 Frame = +1

Query: 154    FGQFAGQLGDGAAMYLGEV-----------------------------CTAAGERWELQL 184
              FG +AGQLGDG A  LG                               C   GE+WELQL
Sbjct: 386635 FGIWAGQLGDGRAHLLGIYMNRYHMFSGIIAFLLNINTDLLILRFLCCC*RQGEKWELQL 386814

Query: 185    KGAGPTPFSRQA------------------------------DGRKVLRSSIREFLCSEA 214
              KG+G TP+SR +                              DGR VLRSS+REFLCSEA
Sbjct: 386815 KGSGKTPYSRYSLIFFWSSK*KLILSSLQLKIFLLLFCPRNGDGRAVLRSSVREFLCSEA 386994

Query: 215    MFHLGIPTTRA 225
              M  LGIPT+RA
Sbjct: 386995 MHSLGIPTSRA 387027



 Score = 41.2 bits (95), Expect = 0.25
 Identities = 20/35 (57%), Positives = 28/35 (80%)
 Frame = +3

Query: 598    ANNPKYVLRNYIAQNAIEAAENGDFSEVRRVLKLL 632
              A NP+YVL+N++A++A+  AE  DFSEV R L+LL
Sbjct: 391584 AVNPRYVLKNWMAESAVRKAERNDFSEV-RCLRLL 391685


>gi|472269944|gb|KB714745.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00039, whole genome
              shotgun sequence
          Length = 4111496

 Score = 53.1 bits (126), Expect = 6e-05
 Identities = 29/50 (58%), Positives = 33/50 (66%)
 Frame = +1

Query: 460    GADFTNTFYLLSSFPVGPESLGLPEFLAALTAQCASLEELKLAFRPQMDP 509
              GAD TNTFYLL S    PESLGL      +  Q ASLEEL+L F+ Q+DP
Sbjct: 184771 GADITNTFYLLISLSAVPESLGLTLSSQRI*LQGASLEELRLPFQSQVDP 184920


>gi|472263686|gb|KB720971.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold06266, whole genome
             shotgun sequence
          Length = 51140

 Score = 48.9 bits (115), Expect = 0.001
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = -1

Query: 334   WQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDRYDP 369
             W       GV NTDN S++ +TIDYGPFGF++ Y+P
Sbjct: 17510 WNLFVVVSGVCNTDNFSLLSITIDYGPFGFMEAYNP 17403



 Score = 41.2 bits (95), Expect = 0.25
 Identities = 20/35 (57%), Positives = 28/35 (80%)
 Frame = -2

Query: 598  ANNPKYVLRNYIAQNAIEAAENGDFSEVRRVLKLL 632
            A NP+YVL+N++A++A+  AE  DFSEV R L+LL
Sbjct: 2782 AVNPRYVLKNWMAESAVRKAERNDFSEV-RCLRLL 2681


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.321    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,223,263,993
Number of Sequences: 16710
Number of extensions: 30876615
Number of successful extensions: 125862
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 329
Number of HSP's that attempted gapping in prelim test: 120776
Number of HSP's gapped (non-prelim): 16980
length of query: 681
length of database: 1,052,295,386
effective HSP length: 139
effective length of query: 542
effective length of database: 1,049,972,696
effective search space: 569085201232
effective search space used: 569085201232
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)