TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000081_2.0 # Protein # Selenoprotein O (SelO) # Walrus
(Odobenus rosmarus)
(681 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472269310|gb|KB715347.1| Leptonychotes weddellii isolate WS11... 206 3e-69
gi|472267791|gb|KB716866.1| Leptonychotes weddellii isolate WS11... 74 5e-11
gi|472269944|gb|KB714745.1| Leptonychotes weddellii isolate WS11... 53 6e-05
gi|472263686|gb|KB720971.1| Leptonychotes weddellii isolate WS11... 49 0.001
>gi|472269310|gb|KB715347.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00641, whole genome
shotgun sequence
Length = 1161464
Score = 206 bits (525), Expect(2) = 3e-69
Identities = 115/172 (66%), Positives = 116/172 (67%), Gaps = 49/172 (28%)
Frame = -2
Query: 510 RQLSMMLMLAQSNPQLFALIGTRANVTKELERVEQHSRLEQLSPAELLSKNRGHWADWLQ 569
RQLSMMLMLAQSNPQLFALIGTRANVTKELERVEQHSRLEQLSPAELLSKNRGHWADWLQ
Sbjct: 594721 RQLSMMLMLAQSNPQLFALIGTRANVTKELERVEQHSRLEQLSPAELLSKNRGHWADWLQ 594542
Query: 570 AY-------------------------------------------------RTRLEKDRE 580
Y R RLEKDRE
Sbjct: 594541 EYG*GSRRPGADCSRHPLPGRWLQTTPPKQGTKCRRGGGVAPAGKMNLDDSRARLEKDRE 594362
Query: 581 GVSDEDAWQAERTRVMHANNPKYVLRNYIAQNAIEAAENGDFSEVRRVLKLL 632
GVSD+DAWQAERTRVMHANNPKYVLRNYIAQNAIEAAENGDFSE L LL
Sbjct: 594361 GVSDKDAWQAERTRVMHANNPKYVLRNYIAQNAIEAAENGDFSEASTRLSLL 594206
Score = 189 bits (479), Expect = 7e-46
Identities = 90/101 (89%), Positives = 92/101 (91%)
Frame = -2
Query: 360 PFGFLDRYDPDHVCNASDNAGRYAYSKQPEVCKWNLQKLVEALEPELPREQGEAILAEEF 419
P RYDPDHVCNASDN GRYAYSKQP+VCKWNLQKL EALEPELPRE+GE ILAEEF
Sbjct: 598855 PLAPCGRYDPDHVCNASDNTGRYAYSKQPDVCKWNLQKLAEALEPELPRERGETILAEEF 598676
Query: 420 DPEFRQHYLQKMRRKLGLVHAELDEDGALVAKLLETMHLTG 460
DPEFRQHYLQKMRRKLGLV AELDEDGALVAKLLETMHLTG
Sbjct: 598675 DPEFRQHYLQKMRRKLGLVRAELDEDGALVAKLLETMHLTG 598553
Score = 140 bits (353), Expect = 3e-31
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = -2
Query: 194 RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVVRDVFYDGNPKYEKCTVV 253
RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTV+RDVFYDGNPKYEKCTVV
Sbjct: 602020 RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVIRDVFYDGNPKYEKCTVV 601841
Query: 254 LRIASTFLR 262
LRIASTFLR
Sbjct: 601840 LRIASTFLR 601814
Score = 128 bits (322), Expect = 1e-27
Identities = 58/58 (100%), Positives = 58/58 (100%)
Frame = -1
Query: 137 ALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSR 194
ALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSR
Sbjct: 606746 ALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSR 606573
Score = 126 bits (316), Expect = 6e-27
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = -2
Query: 262 RFGSFEIFKSADEHTGREGPSVGRNDIRVQMLDYVISTFYPEIQAAHANDRVQRNAAFFR 321
RFGSFEIFKSADEHTGREGPSVGRNDIRVQMLDYVISTFYPEIQAAHA+DRVQRNAAFFR
Sbjct: 600199 RFGSFEIFKSADEHTGREGPSVGRNDIRVQMLDYVISTFYPEIQAAHADDRVQRNAAFFR 600020
Query: 322 EV 323
EV
Sbjct: 600019 EV 600014
Score = 106 bits (265), Expect = 5e-21
Identities = 52/57 (91%), Positives = 53/57 (92%)
Frame = -2
Query: 454 ETMHLTGADFTNTFYLLSSFPVGPESLGLPEFLAALTAQCASLEELKLAFRPQMDPR 510
E + GADFTNTFYLLSSFPVGPESLGLPEFLAALTAQCASLEELKLAFRPQMDPR
Sbjct: 595696 EQRRVPGADFTNTFYLLSSFPVGPESLGLPEFLAALTAQCASLEELKLAFRPQMDPR 595526
Score = 98.2 bits (243), Expect = 2e-18
Identities = 44/45 (97%), Positives = 45/45 (100%)
Frame = -3
Query: 322 EVTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDR 366
+VTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDR
Sbjct: 599391 QVTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDR 599257
Score = 82.0 bits (201), Expect(2) = 3e-69
Identities = 41/58 (70%), Positives = 42/58 (72%)
Frame = -3
Query: 624 EVRRVLKLLETPYHRDXXXXXXXXXXXXXXADGADSGGHSYSSKPPLWAAELCVTXSS 681
+VRRVLKLLETPYHRD A GADSGGHSYSSKPPLWAAELCVT SS
Sbjct: 594129 QVRRVLKLLETPYHRDGEATEDLEATEPEGAGGADSGGHSYSSKPPLWAAELCVT*SS 593956
>gi|472267791|gb|KB716866.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02160, whole genome
shotgun sequence
Length = 521749
Score = 73.6 bits (179), Expect = 5e-11
Identities = 51/131 (38%), Positives = 58/131 (44%), Gaps = 59/131 (45%)
Frame = +1
Query: 154 FGQFAGQLGDGAAMYLGEV-----------------------------CTAAGERWELQL 184
FG +AGQLGDG A LG C GE+WELQL
Sbjct: 386635 FGIWAGQLGDGRAHLLGIYMNRYHMFSGIIAFLLNINTDLLILRFLCCC*RQGEKWELQL 386814
Query: 185 KGAGPTPFSRQA------------------------------DGRKVLRSSIREFLCSEA 214
KG+G TP+SR + DGR VLRSS+REFLCSEA
Sbjct: 386815 KGSGKTPYSRYSLIFFWSSK*KLILSSLQLKIFLLLFCPRNGDGRAVLRSSVREFLCSEA 386994
Query: 215 MFHLGIPTTRA 225
M LGIPT+RA
Sbjct: 386995 MHSLGIPTSRA 387027
Score = 41.2 bits (95), Expect = 0.25
Identities = 20/35 (57%), Positives = 28/35 (80%)
Frame = +3
Query: 598 ANNPKYVLRNYIAQNAIEAAENGDFSEVRRVLKLL 632
A NP+YVL+N++A++A+ AE DFSEV R L+LL
Sbjct: 391584 AVNPRYVLKNWMAESAVRKAERNDFSEV-RCLRLL 391685
>gi|472269944|gb|KB714745.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00039, whole genome
shotgun sequence
Length = 4111496
Score = 53.1 bits (126), Expect = 6e-05
Identities = 29/50 (58%), Positives = 33/50 (66%)
Frame = +1
Query: 460 GADFTNTFYLLSSFPVGPESLGLPEFLAALTAQCASLEELKLAFRPQMDP 509
GAD TNTFYLL S PESLGL + Q ASLEEL+L F+ Q+DP
Sbjct: 184771 GADITNTFYLLISLSAVPESLGLTLSSQRI*LQGASLEELRLPFQSQVDP 184920
>gi|472263686|gb|KB720971.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold06266, whole genome
shotgun sequence
Length = 51140
Score = 48.9 bits (115), Expect = 0.001
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = -1
Query: 334 WQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDRYDP 369
W GV NTDN S++ +TIDYGPFGF++ Y+P
Sbjct: 17510 WNLFVVVSGVCNTDNFSLLSITIDYGPFGFMEAYNP 17403
Score = 41.2 bits (95), Expect = 0.25
Identities = 20/35 (57%), Positives = 28/35 (80%)
Frame = -2
Query: 598 ANNPKYVLRNYIAQNAIEAAENGDFSEVRRVLKLL 632
A NP+YVL+N++A++A+ AE DFSEV R L+LL
Sbjct: 2782 AVNPRYVLKNWMAESAVRKAERNDFSEV-RCLRLL 2681
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.321 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,223,263,993
Number of Sequences: 16710
Number of extensions: 30876615
Number of successful extensions: 125862
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 329
Number of HSP's that attempted gapping in prelim test: 120776
Number of HSP's gapped (non-prelim): 16980
length of query: 681
length of database: 1,052,295,386
effective HSP length: 139
effective length of query: 542
effective length of database: 1,049,972,696
effective search space: 569085201232
effective search space used: 569085201232
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)