Command line: [exonerate -m p2g --showtargetgff -q ./SelO.fa -t SelO.carpeta/genomic.fa]
Hostname: [ws101095]
C4 Alignment:
------------
Query: SPP00000081_2.0 # Protein # Selenoprotein O (SelO) # Human (Homo sapiens)
Target: gi|472269310|gb|KB715347.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00641, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 2386
Query range: 127 -> 669
Target range: 606746 -> 593955
128 : AlaLeuLeuProGlyAlaGluProAlaAlaHisCysTyrCysGlyHisGlnPheGlyG : 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AlaLeuLeuProGlyAlaGluProAlaAlaHisCysTyrCysGlyHisGlnPheGlyG
606746 : GCGCTGCTGCCGGGCGCCGAGCCCGCCGCGCACTGCTACTGCGGCCACCAGTTTGGCC : 606689
148 : lnPheAlaGlyGlnLeuGlyAspGlyAlaAlaMetTyrLeuGlyGluValCysThrAl : 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
lnPheAlaGlyGlnLeuGlyAspGlyAlaAlaMetTyrLeuGlyGluValCysThrAl
606688 : AGTTCGCGGGGCAGCTGGGCGACGGCGCCGCCATGTACCTGGGCGAGGTGTGCACGGC : 606632
167 : aThrGlyGluArgTrpGluLeuGlnLeuLysGlyAlaGlyProThrProPheSer{Ar : 185
|.!!|||||||||||||||||||||||||||||||||||||||||||||||||||{||
aAlaGlyGluArgTrpGluLeuGlnLeuLysGlyAlaGlyProThrProPheSer{Ar
606631 : CGCCGGCGAGCGCTGGGAGCTGCAGCTCAAGGGCGCCGGCCCCACGCCCTTCTCC{AG : 606575
186 : } >>>> Target Intron 1 >>>> {g}GlnAlaAspGlyArgLysValLeuA : 194
} 4555 bp {|}|||||||||||||||||||||||||
}++ ++{g}GlnAlaAspGlyArgLysValLeuA
606574 : }gt.........................ag{A}CAGGCCGACGGCCGCAAAGTCCTGC : 601993
195 : rgSerSerIleArgGluPheLeuCysSerGluAlaMetPheHisLeuGlyValProTh : 213
||||||||||||||||||||||||||||||||||||||||||||||||||:!!|||||
rgSerSerIleArgGluPheLeuCysSerGluAlaMetPheHisLeuGlyIleProTh
601992 : GGTCGAGCATCCGCGAGTTCCTGTGCAGCGAAGCAATGTTCCACCTGGGCATCCCCAC : 601936
214 : rThrArgAlaGlyAlaCysValThrSerGluSerThrValValArgAspValPheTyr : 232
||||||||||||||||||||||||||||:!!|||||||||:!!|||||||||||||||
rThrArgAlaGlyAlaCysValThrSerGlnSerThrValIleArgAspValPheTyr
601935 : CACGCGGGCCGGGGCCTGCGTCACGTCCCAGTCCACAGTCATTCGAGACGTCTTCTAT : 601879
233 : AspGlyAsnProLysTyrGluGlnCysThrValValLeuArgValAlaSerThrPheI : 252
|||||||||||||||||||||:!!||||||||||||||||||:!!||||||||||||:
AspGlyAsnProLysTyrGluLysCysThrValValLeuArgIleAlaSerThrPheL
601878 : GATGGTAATCCAAAATATGAGAAGTGCACAGTTGTGCTGCGCATAGCTTCCACTTTTC : 601819
253 : le{Ar} >>>> Target Intron 2 >>>> {g}PheGlySerPheGluIlePh : 260
!!{||} 1617 bp {|}||||||||||||||||||||
eu{Ar}++ ++{g}PheGlySerPheGluIlePh
601818 : TA{AG}gt.........................ag{G}TTCGGATCCTTTGAGATTTT : 600178
261 : eLysSerAlaAspGluHisThrGlyArgAlaGlyProSerValGlyArgAsnAspIle : 279
||||||||||||||||||||||||||||! !|||||||||||||||||||||||||||
eLysSerAlaAspGluHisThrGlyArgGluGlyProSerValGlyArgAsnAspIle
600177 : TAAGTCTGCAGATGAGCACACAGGGCGTGAAGGGCCCAGTGTGGGGAGAAATGACATC : 600121
280 : ArgValGlnLeuLeuAspTyrValIleSerSerPheTyrProGluIleGlnAlaAlaH : 299
|||||||||:!!||||||||||||||||||!!!|||||||||||||||||||||||||
ArgValGlnMetLeuAspTyrValIleSerThrPheTyrProGluIleGlnAlaAlaH
600120 : CGAGTCCAGATGCTTGACTATGTGATCAGCACGTTTTATCCTGAGATCCAGGCCGCGC : 600061
300 : isAlaSerAspSerValGlnArgAsnAlaAlaPhePheArgGlu >>>> Target : 314
|||||..!||| !!|||||||||||||||||||||||||||||| 62
isAlaAspAspArgValGlnArgAsnAlaAlaPhePheArgGlu++
600060 : ACGCGGATGACCGTGTGCAGAGGAATGCCGCCTTCTTCCGGGAGgt............ : 600014
315 : Intron 3 >>>> ValThrArgArgThrAlaArgMetValAlaGluTrpGlnCysV : 328
8 bp |||||||||||||||||||||||||||||||||||||||||||
++ValThrArgArgThrAlaArgMetValAlaGluTrpGlnCysV
600013 : .............agGTGACCCGTCGCACGGCCCGGATGGTGGCGGAGTGGCAGTGTG : 599346
329 : alGlyPheCysHisGlyValLeuAsnThrAspAsnMetSerIleLeuGlyLeuThrIl : 347
||||||||||||||||||||||||||||||||||||||||||||:!!|||||||||||
alGlyPheCysHisGlyValLeuAsnThrAspAsnMetSerIleValGlyLeuThrIl
599345 : TGGGCTTCTGCCACGGCGTGCTCAACACAGACAACATGAGCATCGTGGGGCTCACCAT : 599289
348 : eAspTyrGlyProPheGlyPheLeuAsp{Ar} >>>> Target Intron 4 >>> : 357
||||||||||||||||||||||||||||{||} 422 bp
eAspTyrGlyProPheGlyPheLeuAsp{Ar}++
599288 : CGACTACGGGCCCTTCGGCTTCCTGGAC{AG}gt........................ : 599255
358 : > {g}TyrAspProAspHisValCysAsnAlaSerAspAsnThrGlyArgTyrAlaT : 375
{|}||||||||||||||||||||||||||||||||||||||||||||||||||||
++{g}TyrAspProAspHisValCysAsnAlaSerAspAsnThrGlyArgTyrAlaT
599254 : .ag{G}TACGACCCTGACCACGTGTGCAATGCTTCCGACAACACTGGGCGCTACGCAT : 598783
376 : yrSerLysGlnProGluValCysArgTrpAsnLeuArgLysLeuAlaGluAlaLeuGl : 394
||||||||||||||!!:||||||!:!|||||||||!:!||||||||||||||||||:!
yrSerLysGlnProAspValCysLysTrpAsnLeuGlnLysLeuAlaGluAlaLeuGl
598782 : ACAGCAAGCAGCCCGACGTTTGCAAGTGGAACCTGCAGAAGCTGGCGGAGGCCCTGGA : 598726
395 : nProGluLeuProLeuGluLeuGlyGluAlaIleLeuAlaGluGluPheAspAlaGlu : 413
!||||||||||||! !|||! !||||||.!!||||||||||||||||||||| !!|||
uProGluLeuProArgGluArgGlyGluThrIleLeuAlaGluGluPheAspProGlu
598725 : GCCCGAGCTGCCCCGCGAGCGGGGCGAGACCATCCTGGCCGAGGAGTTCGACCCGGAG : 598669
414 : PheGlnArgHisTyrLeuGlnLysMetArgArgLysLeuGlyLeuValGlnValGluL : 433
|||!::!:!|||||||||||||||||||||||||||||||||||||||!::!.!||||
PheArgGlnHisTyrLeuGlnLysMetArgArgLysLeuGlyLeuValArgAlaGluL
598668 : TTCCGCCAGCACTACCTGCAGAAGATGCGCAGGAAGCTGGGCCTGGTGCGCGCCGAGC : 598609
434 : euGluGluAspGlyAlaLeuValSerLysLeuLeuGluThrMetHisLeuThr{G} : 451
||!!:||||||||||||||||||:!!|||||||||||||||||||||||||||{|}
euAspGluAspGlyAlaLeuValAlaLysLeuLeuGluThrMetHisLeuThr{G}++
598608 : TGGACGAGGACGGGGCGCTGGTGGCCAAGCTCCTGGAGACCATGCACCTGACT{G}gt : 598554
452 : >>>> Target Intron 5 >>>> {ly}AlaAspPheThrAsnThrPheTyrLeu : 460
2877 bp {||}|||||||||||||||||||||||||||
++{ly}AlaAspPheThrAsnThrPheTyrLeu
598553 : .........................ag{GG}GCCGACTTCACAAACACCTTCTACTTG : 595651
461 : LeuSerSerPheProValGluLeuGluSerProGlyLeuAlaGluPheLeuAlaArgL : 480
||||||||||||||||||! !! !||||||! !|||||| !!|||||||||||| !|
LeuSerSerPheProValGlyProGluSerLeuGlyLeuProGluPheLeuAlaAlaL
595650 : CTGAGCTCCTTCCCAGTTGGGCCAGAGTCCCTGGGCCTGCCTGAGTTCCTGGCCGCGC : 595591
481 : euMetGluGlnCysAlaSerLeuGluGluLeuArgLeuAlaPheArgProGlnMetAs : 499
||! ! !||||||||||||||||||||||||!:!|||||||||||||||||||||||
euThrAlaGlnCysAlaSerLeuGluGluLeuLysLeuAlaPheArgProGlnMetAs
595590 : TGACCGCACAGTGTGCCTCCCTGGAGGAGCTGAAGCTCGCCTTCCGACCCCAGATGGA : 595534
500 : pPro{Ar} >>>> Target Intron 6 >>>> {g}GlnLeuSerMetMetLeu : 507
||||{||} 807 bp {|}||||||||||||||||||
pPro{Ar}++ ++{g}GlnLeuSerMetMetLeu
595533 : TCCC{CG}gt.........................ag{G}CAGCTCTCGATGATGCTG : 594703
508 : MetLeuAlaGlnSerAsnProGlnLeuPheAlaLeuMetGlyThrArgAlaGlyIleA : 527
||||||||||||||||||||||||||||||||||||!!:||||||||||||..!:!:.
MetLeuAlaGlnSerAsnProGlnLeuPheAlaLeuIleGlyThrArgAlaAsnValT
594702 : ATGCTGGCACAGTCCAACCCCCAGCTCTTCGCGCTCATCGGCACCCGGGCGAACGTGA : 594643
528 : laArgGluLeuGluArgValGluGlnGlnSerArgLeuGluGlnLeuSerAlaAlaGl : 546
!!!:!|||||||||||||||||||||!!.||||||||||||||||||||| !!|||||
hrLysGluLeuGluArgValGluGlnHisSerArgLeuGluGlnLeuSerProAlaGl
594642 : CGAAGGAGCTAGAACGCGTGGAGCAGCATTCGCGGCTGGAGCAGCTGAGCCCGGCTGA : 594586
547 : uLeuGlnSerArgAsnGlnGlyHisTrpAlaAspTrpLeuGlnAlaTyr{Ar} >>> : 563
||||! !|||!:!|||::!||||||||||||||||||||||||! !|||{ !}
uLeuLeuSerLysAsnArgGlyHisTrpAlaAspTrpLeuGlnGluTyr{Gl}++
594585 : GCTGCTGAGCAAGAACAGGGGCCACTGGGCTGACTGGCTCCAGGAGTAT{GG}gt... : 594531
564 : > Target Intron 7 >>>> {g}AlaArgLeuAspLysAspLeuGluGlyAlaG : 574
147 bp {!}|||||||||!!:|||||| !||||||!.!.
++{y}AlaArgLeuGluLysAspArgGluGlyValS
594530 : ......................ag{A}GCCCGGCTGGAGAAGGACAGGGAGGGCGTCA : 594355
575 : lyAspAlaAlaAlaTrpGlnAlaGluHisValArgValMetHisAlaAsnAsnProLy : 593
!!||| !! !|||||||||||||||!.!..!||||||||||||||||||||||||||
erAspLysAspAlaTrpGlnAlaGluArgThrArgValMetHisAlaAsnAsnProLy
594354 : GCGACAAGGATGCCTGGCAGGCTGAGCGCACGCGCGTCATGCATGCCAACAACCCCAA : 594298
594 : sTyrValLeuArgAsnTyrIleAlaGlnAsnAlaIleGluAlaAlaGluArgGlyAsp : 612
|||||||||||||||||||||||||||||||||||||||||||||||||!.!||||||
sTyrValLeuArgAsnTyrIleAlaGlnAsnAlaIleGluAlaAlaGluAsnGlyAsp
594297 : GTACGTCCTGCGGAACTACATCGCCCAGAATGCCATCGAGGCCGCCGAGAACGGAGAC : 594241
613 : PheSerGlu >>>> Target Intron 8 >>>> ValArgArgValLeuLysLe : 622
||||||||| 103 bp ||||||||||||||||||||
PheSerGlu+- ++ValArgArgValLeuLysLe
594240 : TTCTCAGAGgc.........................agGTGCGGCGGGTGCTGAAGCT : 594108
623 : uLeuGluThrProTyrHisCysGluAlaGlyAlaAlaThrAspAlaGluAlaThrGlu : 641
||||||||||||||||||| ! !!:!.!! !|||.!! !||| !||||||||||||
uLeuGluThrProTyrHisArgAspGlyGluAlaThrGluAspLeuGluAlaThrGlu
594107 : ACTGGAAACCCCTTACCACAGGGACGGGGAGGCCACCGAGGACCTGGAGGCCACTGAG : 594051
642 : <-><-><->AlaAspGlyAlaAspGlyArgGlnArgSerTyrSerSerLysProProL : 658
|||! !|||||||||.!! !! !!.!||||||||||||||||||||||
ProGluGlyAlaGlyGlyAlaAspSerGlyGlyHisSerTyrSerSerLysProProL
594050 : CCTGAGGGGGCTGGCGGGGCAGACAGTGGGGGGCACTCCTACAGCAGCAAGCCCCCAC : 593991
659 : euTrpAlaAlaGluLeuCysValThrUnkSerSer : 669
|||||||||||||||||||||||||| ||||||
euTrpAlaAlaGluLeuCysValThr***SerSer
593990 : TGTGGGCAGCCGAACTGTGCGTGACGTGATCCTCG : 593956
vulgar: SPP00000081_2.0 127 669 . gi|472269310|gb|KB715347.1| 606746 593955 - 2386 M 57 171 S 0 2 5 0 2 I 0 4551 3 0 2 S 1 1 M 67 201 S 0 2 5 0 2 I 0 1613 3 0 2 S 1 1 M 60 180 5 0 2 I 0 624 3 0 2 M 43 129 S 0 2 5 0 2 I 0 418 3 0 2 S 1 1 M 93 279 S 0 1 5 0 2 I 0 2873 3 0 2 S 1 2 M 49 147 S 0 2 5 0 2 I 0 803 3 0 2 S 1 1 M 61 183 S 0 2 5 0 2 I 0 143 3 0 2 S 1 1 M 52 156 5 0 2 I 0 99 3 0 2 M 26 78 G 0 9 M 28 84
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local gene 593956 606746 2386 - . gene_id 1 ; sequence SPP00000081_2.0 ; gene_orientation +
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 606574 606746 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 606574 606746 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 606572 606573 . - . intron_id 1 ; splice_site "GT"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 602019 606573 . - . intron_id 1
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 602019 602020 . - . intron_id 0 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 601815 602018 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 601815 602018 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 601813 601814 . - . intron_id 2 ; splice_site "GT"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 600198 601814 . - . intron_id 2
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 600198 600199 . - . intron_id 1 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 600017 600197 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 600017 600197 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 600015 600016 . - . intron_id 3 ; splice_site "GT"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 599389 600016 . - . intron_id 3
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 599389 599390 . - . intron_id 2 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 599258 599388 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 599258 599388 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 599256 599257 . - . intron_id 4 ; splice_site "GT"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 598836 599257 . - . intron_id 4
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 598836 598837 . - . intron_id 3 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 598555 598835 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 598555 598835 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 598553 598554 . - . intron_id 5 ; splice_site "GT"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 595678 598554 . - . intron_id 5
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 595678 595679 . - . intron_id 4 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 595527 595677 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 595527 595677 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 595525 595526 . - . intron_id 6 ; splice_site "GT"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 594720 595526 . - . intron_id 6
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 594720 594721 . - . intron_id 5 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 594534 594719 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 594534 594719 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 594532 594533 . - . intron_id 7 ; splice_site "GT"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 594387 594533 . - . intron_id 7
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 594387 594388 . - . intron_id 6 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 594230 594386 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 594230 594386 . - . insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice5 594228 594229 . - . intron_id 8 ; splice_site "GC"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local intron 594127 594229 . - . intron_id 8
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local splice3 594127 594128 . - . intron_id 7 ; splice_site "AG"
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local cds 593956 594126 . - .
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local exon 593956 594126 . - . insertions 9 ; deletions 0
gi|472269310|gb|KB715347.1| exonerate:protein2genome:local similarity 593956 606746 2386 - . alignment_id 1 ; Query SPP00000081_2.0 ; Align 606747 128 171 ; Align 602018 186 201 ; Align 600197 254 180 ; Align 599389 314 129 ; Align 598835 358 279 ; Align 595676 452 147 ; Align 594719 502 183 ; Align 594386 564 156 ; Align 594127 616 78 ; Align 594040 642 84
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis