Command line: [exonerate -m p2g --showtargetgff -q ./SelO.fa -t SelO.carpeta/genomic.fa]
Hostname: [ws101095]

C4 Alignment:
------------
         Query: SPP00000081_2.0 # Protein # Selenoprotein O (SelO) # Human (Homo sapiens)
        Target: gi|472269310|gb|KB715347.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00641, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 2386
   Query range: 127 -> 669
  Target range: 606746 -> 593955

    128 : AlaLeuLeuProGlyAlaGluProAlaAlaHisCysTyrCysGlyHisGlnPheGlyG :    147
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaLeuLeuProGlyAlaGluProAlaAlaHisCysTyrCysGlyHisGlnPheGlyG
 606746 : GCGCTGCTGCCGGGCGCCGAGCCCGCCGCGCACTGCTACTGCGGCCACCAGTTTGGCC : 606689

    148 : lnPheAlaGlyGlnLeuGlyAspGlyAlaAlaMetTyrLeuGlyGluValCysThrAl :    166
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lnPheAlaGlyGlnLeuGlyAspGlyAlaAlaMetTyrLeuGlyGluValCysThrAl
 606688 : AGTTCGCGGGGCAGCTGGGCGACGGCGCCGCCATGTACCTGGGCGAGGTGTGCACGGC : 606632

    167 : aThrGlyGluArgTrpGluLeuGlnLeuLysGlyAlaGlyProThrProPheSer{Ar :    185
          |.!!|||||||||||||||||||||||||||||||||||||||||||||||||||{||
          aAlaGlyGluArgTrpGluLeuGlnLeuLysGlyAlaGlyProThrProPheSer{Ar
 606631 : CGCCGGCGAGCGCTGGGAGCTGCAGCTCAAGGGCGCCGGCCCCACGCCCTTCTCC{AG : 606575

    186 : }  >>>> Target Intron 1 >>>>  {g}GlnAlaAspGlyArgLysValLeuA :    194
          }           4555 bp           {|}|||||||||||||||||||||||||
          }++                         ++{g}GlnAlaAspGlyArgLysValLeuA
 606574 : }gt.........................ag{A}CAGGCCGACGGCCGCAAAGTCCTGC : 601993

    195 : rgSerSerIleArgGluPheLeuCysSerGluAlaMetPheHisLeuGlyValProTh :    213
          ||||||||||||||||||||||||||||||||||||||||||||||||||:!!|||||
          rgSerSerIleArgGluPheLeuCysSerGluAlaMetPheHisLeuGlyIleProTh
 601992 : GGTCGAGCATCCGCGAGTTCCTGTGCAGCGAAGCAATGTTCCACCTGGGCATCCCCAC : 601936

    214 : rThrArgAlaGlyAlaCysValThrSerGluSerThrValValArgAspValPheTyr :    232
          ||||||||||||||||||||||||||||:!!|||||||||:!!|||||||||||||||
          rThrArgAlaGlyAlaCysValThrSerGlnSerThrValIleArgAspValPheTyr
 601935 : CACGCGGGCCGGGGCCTGCGTCACGTCCCAGTCCACAGTCATTCGAGACGTCTTCTAT : 601879

    233 : AspGlyAsnProLysTyrGluGlnCysThrValValLeuArgValAlaSerThrPheI :    252
          |||||||||||||||||||||:!!||||||||||||||||||:!!||||||||||||:
          AspGlyAsnProLysTyrGluLysCysThrValValLeuArgIleAlaSerThrPheL
 601878 : GATGGTAATCCAAAATATGAGAAGTGCACAGTTGTGCTGCGCATAGCTTCCACTTTTC : 601819

    253 : le{Ar}  >>>> Target Intron 2 >>>>  {g}PheGlySerPheGluIlePh :    260
          !!{||}           1617 bp           {|}||||||||||||||||||||
          eu{Ar}++                         ++{g}PheGlySerPheGluIlePh
 601818 : TA{AG}gt.........................ag{G}TTCGGATCCTTTGAGATTTT : 600178

    261 : eLysSerAlaAspGluHisThrGlyArgAlaGlyProSerValGlyArgAsnAspIle :    279
          ||||||||||||||||||||||||||||! !|||||||||||||||||||||||||||
          eLysSerAlaAspGluHisThrGlyArgGluGlyProSerValGlyArgAsnAspIle
 600177 : TAAGTCTGCAGATGAGCACACAGGGCGTGAAGGGCCCAGTGTGGGGAGAAATGACATC : 600121

    280 : ArgValGlnLeuLeuAspTyrValIleSerSerPheTyrProGluIleGlnAlaAlaH :    299
          |||||||||:!!||||||||||||||||||!!!|||||||||||||||||||||||||
          ArgValGlnMetLeuAspTyrValIleSerThrPheTyrProGluIleGlnAlaAlaH
 600120 : CGAGTCCAGATGCTTGACTATGTGATCAGCACGTTTTATCCTGAGATCCAGGCCGCGC : 600061

    300 : isAlaSerAspSerValGlnArgAsnAlaAlaPhePheArgGlu  >>>> Target  :    314
          |||||..!||| !!||||||||||||||||||||||||||||||            62
          isAlaAspAspArgValGlnArgAsnAlaAlaPhePheArgGlu++            
 600060 : ACGCGGATGACCGTGTGCAGAGGAATGCCGCCTTCTTCCGGGAGgt............ : 600014

    315 : Intron 3 >>>>  ValThrArgArgThrAlaArgMetValAlaGluTrpGlnCysV :    328
          8 bp           |||||||||||||||||||||||||||||||||||||||||||
                       ++ValThrArgArgThrAlaArgMetValAlaGluTrpGlnCysV
 600013 : .............agGTGACCCGTCGCACGGCCCGGATGGTGGCGGAGTGGCAGTGTG : 599346

    329 : alGlyPheCysHisGlyValLeuAsnThrAspAsnMetSerIleLeuGlyLeuThrIl :    347
          ||||||||||||||||||||||||||||||||||||||||||||:!!|||||||||||
          alGlyPheCysHisGlyValLeuAsnThrAspAsnMetSerIleValGlyLeuThrIl
 599345 : TGGGCTTCTGCCACGGCGTGCTCAACACAGACAACATGAGCATCGTGGGGCTCACCAT : 599289

    348 : eAspTyrGlyProPheGlyPheLeuAsp{Ar}  >>>> Target Intron 4 >>> :    357
          ||||||||||||||||||||||||||||{||}            422 bp        
          eAspTyrGlyProPheGlyPheLeuAsp{Ar}++                        
 599288 : CGACTACGGGCCCTTCGGCTTCCTGGAC{AG}gt........................ : 599255

    358 : >  {g}TyrAspProAspHisValCysAsnAlaSerAspAsnThrGlyArgTyrAlaT :    375
             {|}||||||||||||||||||||||||||||||||||||||||||||||||||||
           ++{g}TyrAspProAspHisValCysAsnAlaSerAspAsnThrGlyArgTyrAlaT
 599254 : .ag{G}TACGACCCTGACCACGTGTGCAATGCTTCCGACAACACTGGGCGCTACGCAT : 598783

    376 : yrSerLysGlnProGluValCysArgTrpAsnLeuArgLysLeuAlaGluAlaLeuGl :    394
          ||||||||||||||!!:||||||!:!|||||||||!:!||||||||||||||||||:!
          yrSerLysGlnProAspValCysLysTrpAsnLeuGlnLysLeuAlaGluAlaLeuGl
 598782 : ACAGCAAGCAGCCCGACGTTTGCAAGTGGAACCTGCAGAAGCTGGCGGAGGCCCTGGA : 598726

    395 : nProGluLeuProLeuGluLeuGlyGluAlaIleLeuAlaGluGluPheAspAlaGlu :    413
          !||||||||||||! !|||! !||||||.!!||||||||||||||||||||| !!|||
          uProGluLeuProArgGluArgGlyGluThrIleLeuAlaGluGluPheAspProGlu
 598725 : GCCCGAGCTGCCCCGCGAGCGGGGCGAGACCATCCTGGCCGAGGAGTTCGACCCGGAG : 598669

    414 : PheGlnArgHisTyrLeuGlnLysMetArgArgLysLeuGlyLeuValGlnValGluL :    433
          |||!::!:!|||||||||||||||||||||||||||||||||||||||!::!.!||||
          PheArgGlnHisTyrLeuGlnLysMetArgArgLysLeuGlyLeuValArgAlaGluL
 598668 : TTCCGCCAGCACTACCTGCAGAAGATGCGCAGGAAGCTGGGCCTGGTGCGCGCCGAGC : 598609

    434 : euGluGluAspGlyAlaLeuValSerLysLeuLeuGluThrMetHisLeuThr{G}   :    451
          ||!!:||||||||||||||||||:!!|||||||||||||||||||||||||||{|}  
          euAspGluAspGlyAlaLeuValAlaLysLeuLeuGluThrMetHisLeuThr{G}++
 598608 : TGGACGAGGACGGGGCGCTGGTGGCCAAGCTCCTGGAGACCATGCACCTGACT{G}gt : 598554

    452 : >>>> Target Intron 5 >>>>  {ly}AlaAspPheThrAsnThrPheTyrLeu :    460
                   2877 bp           {||}|||||||||||||||||||||||||||
                                   ++{ly}AlaAspPheThrAsnThrPheTyrLeu
 598553 : .........................ag{GG}GCCGACTTCACAAACACCTTCTACTTG : 595651

    461 : LeuSerSerPheProValGluLeuGluSerProGlyLeuAlaGluPheLeuAlaArgL :    480
          ||||||||||||||||||! !! !||||||! !|||||| !!||||||||||||  !|
          LeuSerSerPheProValGlyProGluSerLeuGlyLeuProGluPheLeuAlaAlaL
 595650 : CTGAGCTCCTTCCCAGTTGGGCCAGAGTCCCTGGGCCTGCCTGAGTTCCTGGCCGCGC : 595591

    481 : euMetGluGlnCysAlaSerLeuGluGluLeuArgLeuAlaPheArgProGlnMetAs :    499
          ||!  ! !||||||||||||||||||||||||!:!|||||||||||||||||||||||
          euThrAlaGlnCysAlaSerLeuGluGluLeuLysLeuAlaPheArgProGlnMetAs
 595590 : TGACCGCACAGTGTGCCTCCCTGGAGGAGCTGAAGCTCGCCTTCCGACCCCAGATGGA : 595534

    500 : pPro{Ar}  >>>> Target Intron 6 >>>>  {g}GlnLeuSerMetMetLeu :    507
          ||||{||}            807 bp           {|}||||||||||||||||||
          pPro{Ar}++                         ++{g}GlnLeuSerMetMetLeu
 595533 : TCCC{CG}gt.........................ag{G}CAGCTCTCGATGATGCTG : 594703

    508 : MetLeuAlaGlnSerAsnProGlnLeuPheAlaLeuMetGlyThrArgAlaGlyIleA :    527
          ||||||||||||||||||||||||||||||||||||!!:||||||||||||..!:!:.
          MetLeuAlaGlnSerAsnProGlnLeuPheAlaLeuIleGlyThrArgAlaAsnValT
 594702 : ATGCTGGCACAGTCCAACCCCCAGCTCTTCGCGCTCATCGGCACCCGGGCGAACGTGA : 594643

    528 : laArgGluLeuGluArgValGluGlnGlnSerArgLeuGluGlnLeuSerAlaAlaGl :    546
          !!!:!|||||||||||||||||||||!!.||||||||||||||||||||| !!|||||
          hrLysGluLeuGluArgValGluGlnHisSerArgLeuGluGlnLeuSerProAlaGl
 594642 : CGAAGGAGCTAGAACGCGTGGAGCAGCATTCGCGGCTGGAGCAGCTGAGCCCGGCTGA : 594586

    547 : uLeuGlnSerArgAsnGlnGlyHisTrpAlaAspTrpLeuGlnAlaTyr{Ar}  >>> :    563
          ||||! !|||!:!|||::!||||||||||||||||||||||||! !|||{ !}     
          uLeuLeuSerLysAsnArgGlyHisTrpAlaAspTrpLeuGlnGluTyr{Gl}++   
 594585 : GCTGCTGAGCAAGAACAGGGGCCACTGGGCTGACTGGCTCCAGGAGTAT{GG}gt... : 594531

    564 : > Target Intron 7 >>>>  {g}AlaArgLeuAspLysAspLeuGluGlyAlaG :    574
                 147 bp           {!}|||||||||!!:||||||  !||||||!.!.
                                ++{y}AlaArgLeuGluLysAspArgGluGlyValS
 594530 : ......................ag{A}GCCCGGCTGGAGAAGGACAGGGAGGGCGTCA : 594355

    575 : lyAspAlaAlaAlaTrpGlnAlaGluHisValArgValMetHisAlaAsnAsnProLy :    593
          !!|||  !! !|||||||||||||||!.!..!||||||||||||||||||||||||||
          erAspLysAspAlaTrpGlnAlaGluArgThrArgValMetHisAlaAsnAsnProLy
 594354 : GCGACAAGGATGCCTGGCAGGCTGAGCGCACGCGCGTCATGCATGCCAACAACCCCAA : 594298

    594 : sTyrValLeuArgAsnTyrIleAlaGlnAsnAlaIleGluAlaAlaGluArgGlyAsp :    612
          |||||||||||||||||||||||||||||||||||||||||||||||||!.!||||||
          sTyrValLeuArgAsnTyrIleAlaGlnAsnAlaIleGluAlaAlaGluAsnGlyAsp
 594297 : GTACGTCCTGCGGAACTACATCGCCCAGAATGCCATCGAGGCCGCCGAGAACGGAGAC : 594241

    613 : PheSerGlu  >>>> Target Intron 8 >>>>  ValArgArgValLeuLysLe :    622
          |||||||||            103 bp           ||||||||||||||||||||
          PheSerGlu+-                         ++ValArgArgValLeuLysLe
 594240 : TTCTCAGAGgc.........................agGTGCGGCGGGTGCTGAAGCT : 594108

    623 : uLeuGluThrProTyrHisCysGluAlaGlyAlaAlaThrAspAlaGluAlaThrGlu :    641
          ||||||||||||||||||| ! !!:!.!! !|||.!!  !|||  !||||||||||||
          uLeuGluThrProTyrHisArgAspGlyGluAlaThrGluAspLeuGluAlaThrGlu
 594107 : ACTGGAAACCCCTTACCACAGGGACGGGGAGGCCACCGAGGACCTGGAGGCCACTGAG : 594051

    642 : <-><-><->AlaAspGlyAlaAspGlyArgGlnArgSerTyrSerSerLysProProL :    658
                   |||! !|||||||||.!! !!  !!.!||||||||||||||||||||||
          ProGluGlyAlaGlyGlyAlaAspSerGlyGlyHisSerTyrSerSerLysProProL
 594050 : CCTGAGGGGGCTGGCGGGGCAGACAGTGGGGGGCACTCCTACAGCAGCAAGCCCCCAC : 593991

    659 : euTrpAlaAlaGluLeuCysValThrUnkSerSer :    669
          ||||||||||||||||||||||||||   ||||||
          euTrpAlaAlaGluLeuCysValThr***SerSer
 593990 : TGTGGGCAGCCGAACTGTGCGTGACGTGATCCTCG : 593956

vulgar: SPP00000081_2.0 127 669 . gi|472269310|gb|KB715347.1| 606746 593955 - 2386 M 57 171 S 0 2 5 0 2 I 0 4551 3 0 2 S 1 1 M 67 201 S 0 2 5 0 2 I 0 1613 3 0 2 S 1 1 M 60 180 5 0 2 I 0 624 3 0 2 M 43 129 S 0 2 5 0 2 I 0 418 3 0 2 S 1 1 M 93 279 S 0 1 5 0 2 I 0 2873 3 0 2 S 1 2 M 49 147 S 0 2 5 0 2 I 0 803 3 0 2 S 1 1 M 61 183 S 0 2 5 0 2 I 0 143 3 0 2 S 1 1 M 52 156 5 0 2 I 0 99 3 0 2 M 26 78 G 0 9 M 28 84
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	gene	593956	606746	2386	-	.	gene_id 1 ; sequence SPP00000081_2.0 ; gene_orientation +
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	cds	606574	606746	.	-	.	
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	exon	606574	606746	.	-	.	insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice5	606572	606573	.	-	.	intron_id 1 ; splice_site "GT"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	intron	602019	606573	.	-	.	intron_id 1
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice3	602019	602020	.	-	.	intron_id 0 ; splice_site "AG"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	cds	601815	602018	.	-	.	
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	exon	601815	602018	.	-	.	insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice5	601813	601814	.	-	.	intron_id 2 ; splice_site "GT"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	intron	600198	601814	.	-	.	intron_id 2
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice3	600198	600199	.	-	.	intron_id 1 ; splice_site "AG"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	cds	600017	600197	.	-	.	
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	exon	600017	600197	.	-	.	insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice5	600015	600016	.	-	.	intron_id 3 ; splice_site "GT"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	intron	599389	600016	.	-	.	intron_id 3
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice3	599389	599390	.	-	.	intron_id 2 ; splice_site "AG"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	cds	599258	599388	.	-	.	
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	exon	599258	599388	.	-	.	insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice5	599256	599257	.	-	.	intron_id 4 ; splice_site "GT"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	intron	598836	599257	.	-	.	intron_id 4
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice3	598836	598837	.	-	.	intron_id 3 ; splice_site "AG"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	cds	598555	598835	.	-	.	
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	exon	598555	598835	.	-	.	insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice5	598553	598554	.	-	.	intron_id 5 ; splice_site "GT"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	intron	595678	598554	.	-	.	intron_id 5
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice3	595678	595679	.	-	.	intron_id 4 ; splice_site "AG"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	cds	595527	595677	.	-	.	
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	exon	595527	595677	.	-	.	insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice5	595525	595526	.	-	.	intron_id 6 ; splice_site "GT"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	intron	594720	595526	.	-	.	intron_id 6
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice3	594720	594721	.	-	.	intron_id 5 ; splice_site "AG"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	cds	594534	594719	.	-	.	
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	exon	594534	594719	.	-	.	insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice5	594532	594533	.	-	.	intron_id 7 ; splice_site "GT"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	intron	594387	594533	.	-	.	intron_id 7
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice3	594387	594388	.	-	.	intron_id 6 ; splice_site "AG"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	cds	594230	594386	.	-	.	
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	exon	594230	594386	.	-	.	insertions 0 ; deletions 0
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice5	594228	594229	.	-	.	intron_id 8 ; splice_site "GC"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	intron	594127	594229	.	-	.	intron_id 8
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	splice3	594127	594128	.	-	.	intron_id 7 ; splice_site "AG"
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	cds	593956	594126	.	-	.	
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	exon	593956	594126	.	-	.	insertions 9 ; deletions 0
gi|472269310|gb|KB715347.1|	exonerate:protein2genome:local	similarity	593956	606746	2386	-	.	alignment_id 1 ; Query SPP00000081_2.0 ; Align 606747 128 171 ; Align 602018 186 201 ; Align 600197 254 180 ; Align 599389 314 129 ; Align 598835 358 279 ; Align 595676 452 147 ; Align 594719 502 183 ; Align 594386 564 156 ; Align 594127 616 78 ; Align 594040 642 84
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis