TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000081_2.0 # Protein # Selenoprotein O (SelO) # Human
(Homo sapiens)
(669 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472269310|gb|KB715347.1| Leptonychotes weddellii isolate WS11... 173 2e-50
gi|472267791|gb|KB716866.1| Leptonychotes weddellii isolate WS11... 73 6e-11
gi|472263686|gb|KB720971.1| Leptonychotes weddellii isolate WS11... 50 5e-04
gi|472269944|gb|KB714745.1| Leptonychotes weddellii isolate WS11... 50 5e-04
>gi|472269310|gb|KB715347.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00641, whole genome
shotgun sequence
Length = 1161464
Score = 173 bits (438), Expect(2) = 2e-50
Identities = 98/172 (56%), Positives = 104/172 (60%), Gaps = 49/172 (28%)
Frame = -2
Query: 501 RQLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAELQSRNQGHWADWLQ 560
RQLSMMLMLAQSNPQLFAL+GTRA + +ELERVEQ SRLEQLS AEL S+N+GHWADWLQ
Sbjct: 594721 RQLSMMLMLAQSNPQLFALIGTRANVTKELERVEQHSRLEQLSPAELLSKNRGHWADWLQ 594542
Query: 561 AY-------------------------------------------------RARLDKDLE 571
Y RARL+KD E
Sbjct: 594541 EYG*GSRRPGADCSRHPLPGRWLQTTPPKQGTKCRRGGGVAPAGKMNLDDSRARLEKDRE 594362
Query: 572 GAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSEVRRVLKLL 623
G D AWQAE RVMHANNPKYVLRNYIAQNAIEAAE GDFSE L LL
Sbjct: 594361 GVSDKDAWQAERTRVMHANNPKYVLRNYIAQNAIEAAENGDFSEASTRLSLL 594206
Score = 146 bits (368), Expect = 5e-33
Identities = 70/101 (69%), Positives = 78/101 (77%)
Frame = -2
Query: 351 PFGFLDRYDPDHVCNASDNTGRYAYSKQPEVCRWNLRKXXXXXXXXXXXXXXXXILAEEF 410
P RYDPDHVCNASDNTGRYAYSKQP+VC+WNL+K ILAEEF
Sbjct: 598855 PLAPCGRYDPDHVCNASDNTGRYAYSKQPDVCKWNLQKLAEALEPELPRERGETILAEEF 598676
Query: 411 DAEFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLTG 451
D EF++HYLQKMRRKLGLV+ EL+EDGALV+KLLETMHLTG
Sbjct: 598675 DPEFRQHYLQKMRRKLGLVRAELDEDGALVAKLLETMHLTG 598553
Score = 136 bits (342), Expect = 6e-30
Identities = 63/69 (91%), Positives = 69/69 (100%)
Frame = -2
Query: 185 RQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVV 244
RQADGRKVLRSSIREFLCSEAMFHLG+PTTRAGACVTS+STV+RDVFYDGNPKYE+CTVV
Sbjct: 602020 RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVIRDVFYDGNPKYEKCTVV 601841
Query: 245 LRVASTFIR 253
LR+ASTF+R
Sbjct: 601840 LRIASTFLR 601814
Score = 127 bits (318), Expect = 3e-27
Identities = 57/58 (98%), Positives = 57/58 (98%)
Frame = -1
Query: 128 ALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFSR 185
ALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTA GERWELQLKGAGPTPFSR
Sbjct: 606746 ALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSR 606573
Score = 118 bits (296), Expect = 1e-24
Identities = 57/62 (91%), Positives = 59/62 (95%)
Frame = -2
Query: 253 RFGSFEIFKSADEHTGRAGPSVGRNDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFR 312
RFGSFEIFKSADEHTGR GPSVGRNDIRVQ+LDYVIS+FYPEIQAAHA D VQRNAAFFR
Sbjct: 600199 RFGSFEIFKSADEHTGREGPSVGRNDIRVQMLDYVISTFYPEIQAAHADDRVQRNAAFFR 600020
Query: 313 EV 314
EV
Sbjct: 600019 EV 600014
Score = 97.1 bits (240), Expect = 4e-18
Identities = 43/45 (95%), Positives = 45/45 (100%)
Frame = -3
Query: 313 EVTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDR 357
+VTRRTARMVAEWQCVGFCHGVLNTDNMSI+GLTIDYGPFGFLDR
Sbjct: 599391 QVTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDR 599257
Score = 86.7 bits (213), Expect = 5e-15
Identities = 44/57 (77%), Positives = 46/57 (80%)
Frame = -2
Query: 445 ETMHLTGADFTNTFYLLSSFPVELESPGLAEFLARLMEQCASLEELRLAFRPQMDPR 501
E + GADFTNTFYLLSSFPV ES GL EFLA L QCASLEEL+LAFRPQMDPR
Sbjct: 595696 EQRRVPGADFTNTFYLLSSFPVGPESLGLPEFLAALTAQCASLEELKLAFRPQMDPR 595526
Score = 52.8 bits (125), Expect(2) = 2e-50
Identities = 31/58 (53%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = -3
Query: 615 EVRRVLKLLETPYHCXXXXXXXXXXXXXXXXXXRQ---RSYSSKPPLWAAELCVTXSS 669
+VRRVLKLLETPYH SYSSKPPLWAAELCVT SS
Sbjct: 594129 QVRRVLKLLETPYHRDGEATEDLEATEPEGAGGADSGGHSYSSKPPLWAAELCVT*SS 593956
>gi|472267791|gb|KB716866.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02160, whole genome
shotgun sequence
Length = 521749
Score = 73.2 bits (178), Expect = 6e-11
Identities = 50/131 (38%), Positives = 58/131 (44%), Gaps = 59/131 (45%)
Frame = +1
Query: 145 FGQFAGQLGDGAAMYLGEV-----------------------------CTATGERWELQL 175
FG +AGQLGDG A LG C GE+WELQL
Sbjct: 386635 FGIWAGQLGDGRAHLLGIYMNRYHMFSGIIAFLLNINTDLLILRFLCCC*RQGEKWELQL 386814
Query: 176 KGAGPTPFSRQA------------------------------DGRKVLRSSIREFLCSEA 205
KG+G TP+SR + DGR VLRSS+REFLCSEA
Sbjct: 386815 KGSGKTPYSRYSLIFFWSSK*KLILSSLQLKIFLLLFCPRNGDGRAVLRSSVREFLCSEA 386994
Query: 206 MFHLGVPTTRA 216
M LG+PT+RA
Sbjct: 386995 MHSLGIPTSRA 387027
Score = 43.1 bits (100), Expect = 0.064
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +3
Query: 589 ANNPKYVLRNYIAQNAIEAAERGDFSEVRRVLKLL 623
A NP+YVL+N++A++A+ AER DFSEV R L+LL
Sbjct: 391584 AVNPRYVLKNWMAESAVRKAERNDFSEV-RCLRLL 391685
>gi|472263686|gb|KB720971.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold06266, whole genome
shotgun sequence
Length = 51140
Score = 50.1 bits (118), Expect = 5e-04
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = -1
Query: 325 WQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDRYDP 360
W GV NTDN S+L +TIDYGPFGF++ Y+P
Sbjct: 17510 WNLFVVVSGVCNTDNFSLLSITIDYGPFGFMEAYNP 17403
Score = 43.1 bits (100), Expect = 0.064
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = -2
Query: 589 ANNPKYVLRNYIAQNAIEAAERGDFSEVRRVLKLL 623
A NP+YVL+N++A++A+ AER DFSEV R L+LL
Sbjct: 2782 AVNPRYVLKNWMAESAVRKAERNDFSEV-RCLRLL 2681
>gi|472269944|gb|KB714745.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00039, whole genome
shotgun sequence
Length = 4111496
Score = 50.1 bits (118), Expect = 5e-04
Identities = 29/50 (58%), Positives = 32/50 (64%)
Frame = +1
Query: 451 GADFTNTFYLLSSFPVELESPGLAEFLARLMEQCASLEELRLAFRPQMDP 500
GAD TNTFYLL S ES GL R+ Q ASLEELRL F+ Q+DP
Sbjct: 184771 GADITNTFYLLISLSAVPESLGLTLSSQRI*LQGASLEELRLPFQSQVDP 184920
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.322 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,185,172,449
Number of Sequences: 16710
Number of extensions: 30139429
Number of successful extensions: 145757
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 277
Number of HSP's that attempted gapping in prelim test: 140376
Number of HSP's gapped (non-prelim): 17440
length of query: 669
length of database: 1,052,295,386
effective HSP length: 139
effective length of query: 530
effective length of database: 1,049,972,696
effective search space: 556485528880
effective search space used: 556485528880
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)