Command line: [exonerate -m p2g --showtargetgff -q ./SelN_walrus.fa -t SelN_walrus.carpeta/genomic.fa]
Hostname: [ws101068]

C4 Alignment:
------------
         Query: SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Walrus (Odobenus rosmarus)
        Target: gi|472267212|gb|KB717445.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02739, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 2525
   Query range: 1 -> 504
  Target range: 182809 -> 170232

      2 : GluProLeuProProLysGlnGluSerAlaLeuLysAlaLeuGlyThrGluGlyLeuP :     21
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluProLeuProProLysGlnGluSerAlaLeuLysAlaLeuGlyThrGluGlyLeuP
 182809 : GAGCCCCTTCCTCCCAAGCAGGAGTCCGCGCTGAAGGCCCTGGGGACGGAAGGCCTCT : 182752

     22 : heLeuPheSerSerLeuAspThrAspArgAspMetTyrIleSerProGluGluPheLy :     40
          ||||||||||||||||||||...|||||||||||||||||||||||||||||||||||
          heLeuPheSerSerLeuAspAlaAspArgAspMetTyrIleSerProGluGluPheLy
 182751 : TTCTCTTTTCCTCCTTGGACGCCGACCGGGATATGTACATCAGCCCCGAGGAGTTCAA : 182695

     41 : sProIleAlaGluLysLeuThr{G}  >>>> Target Intron 1 >>>>  {ly} :     48
          ||||||||||||||||||||||{|}           2944 bp           {||}
          sProIleAlaGluLysLeuThr{G}++                         ++{ly}
 182694 : GCCCATTGCTGAGAAGCTGACA{G}gt.........................ag{GG} : 179726

     49 : SerAlaProAlaGlyGlyTyrGluGluAlaGluLeuAlaLeuAspProSerGluGluT :     68
          |||...||||||......||||||||||||||||||||||||||||||||||||||||
          SerValProAlaAlaSerTyrGluGluAlaGluLeuAlaLeuAspProSerGluGluT
 179725 : TCCGTTCCTGCAGCCAGCTATGAGGAGGCGGAGCTGGCCCTTGACCCCAGTGAGGAGA : 179667

     69 : hrLeuThrIleGluAlaArgPheGlnProLeuArgProGluSerMetThrLysSerLy :     87
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          hrLeuThrIleGluAlaArgPheGlnProLeuArgProGluSerMetThrLysSerLy
 179666 : CGCTCACCATAGAAGCCCGATTCCAGCCTCTGCGCCCGGAGTCCATGACCAAGAGCAA : 179610

     88 : sAspGlyPheLeuGly  >>>> Target Intron 2 >>>>  ValSerArgLeuA :     97
          ||||||||||||||||           2615 bp           |||||||||||||
          sAspGlyPheLeuGly++                         ++ValSerArgLeuA
 179609 : AGATGGGTTCCTGGGGgt.........................agGTCTCCCGCCTGG : 176965

     98 : laLeuSerGlyLeuArgAsnTrpThrThrAlaAlaSerProSerAlaValPheAlaAl :    116
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          laLeuSerGlyLeuArgAsnTrpThrThrAlaAlaSerProSerAlaValPheAlaAl
 176964 : CCCTATCTGGCCTCCGCAACTGGACGACGGCAGCCTCGCCAAGTGCGGTATTCGCCGC : 176908

    117 : aArgHisPheArgProPheLeuProProArgGlyArgValGluLeuGlyGluProTrp :    135
          ||||||||||||||||||||||||||||:::|||||||||||||||||||||||||||
          aArgHisPheArgProPheLeuProProGlnGlyArgValGluLeuGlyGluProTrp
 176907 : CCGCCACTTCCGGCCCTTCCTTCCTCCTCAGGGCCGGGTGGAGCTGGGCGAGCCCTGG : 176851

    136 : TrpIleIleProSerGluLeuSerValPheThrGlyTyrLeuSerAsnAsnArgPheT :    155
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          TrpIleIleProSerGluLeuSerValPheThrGlyTyrLeuSerAsnAsnArgPheT
 176850 : TGGATCATCCCCAGTGAGCTGAGCGTCTTCACCGGCTATCTGTCCAACAACCGCTTCT : 176791

    156 : yrProProProProLysGlyLysGlu  >>>> Target Intron 3 >>>>  Val :    164
          ||||||||||||||||||||||||||            190 bp           |||
          yrProProProProLysGlyLysGlu++                         ++Val
 176790 : ATCCACCACCGCCCAAGGGCAAAGAGgt.........................agGTC : 176574

    165 : IleIleHisArgLeuLeuSerMetPheHisProArgProPheValLysThrArgPheA :    184
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          IleIleHisArgLeuLeuSerMetPheHisProArgProPheValLysThrArgPheA
 176573 : ATCATCCACCGGCTCCTGAGCATGTTCCACCCTCGGCCCTTCGTGAAGACCCGCTTTG : 176514

    185 : laProGlnGlyAlaValAlaCysLeuThrAlaIleSerAspPheTyrTyrThrValMe :    203
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          laProGlnGlyAlaValAlaCysLeuThrAlaIleSerAspPheTyrTyrThrValMe
 176513 : CCCCTCAGGGGGCTGTCGCCTGCCTGACGGCCATCAGCGACTTCTACTACACTGTGAT : 176457

    204 : tPhe{Ar}  >>>> Target Intron 4 >>>>  {g}IleHisAlaGluPheGln :    211
          ||||{||}            540 bp           {|}||||||||||||||||||
          tPhe{Ar}++                         ++{g}IleHisAlaGluPheGln
 176456 : GTTC{CG}gt.........................ag{G}ATCCACGCCGAGTTCCAG : 175893

    212 : LeuSerGluProProAspPheProPheTrpPheSerProGlyGlnPheThrGlyHisI :    231
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          LeuSerGluProProAspPheProPheTrpPheSerProGlyGlnPheThrGlyHisI
 175892 : CTCAGCGAGCCGCCTGACTTCCCCTTCTGGTTCTCACCTGGCCAGTTCACCGGCCACA : 175833

    232 : leIleLeuSerLysAspAlaThrHisIleArgAspPheArgLeuPheValProAsnHi :    250
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          leIleLeuSerLysAspAlaThrHisIleArgAspPheArgLeuPheValProAsnHi
 175832 : TCATCCTCTCCAAAGACGCCACTCATATCCGAGATTTCCGGCTCTTCGTGCCCAACCA : 175776

    251 : s{Ar}  >>>> Target Intron 5 >>>>  {g}SerLeuAsnValAspMetGlu :    258
          |{||}           1598 bp           {|}|||||||||||||||||||||
          s{Ar}++                         ++{g}SerLeuAsnValAspMetGlu
 175775 : C{AG}gt.........................ag{G}TCTCTGAACGTGGACATGGAG : 174154

    259 : TrpLeuTyrGlyAlaGlyGluSerSerAsnMetGluValAspIleGlyTyrIleProG :    278
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          TrpLeuTyrGlyAlaGlyGluSerSerAsnMetGluValAspIleGlyTyrIleProG
 174153 : TGGCTGTACGGGGCCGGTGAGAGCAGCAACATGGAGGTGGACATTGGCTACATCCCCC : 174094

    279 : ln  >>>> Target Intron 6 >>>>  MetGluLeuGluAlaLeuGlyProSer :    287
          ||            372 bp           |||||||||||||||||||||||||||
          ln++                         ++MetGluLeuGluAlaLeuGlyProSer
 174093 : AGgt.........................agATGGAGCTGGAGGCCCTGGGCCCATCA : 173695

    288 : ValProSerMetIleLeuAspGluAspGlyAsnMetIleAsnSerArgProProSerG :    307
          |||||||||||||||||||||||||||||||||||||||:::|||...||||||||||
          ValProSerMetIleLeuAspGluAspGlyAsnMetIleAspSerHisProProSerG
 173694 : GTCCCCTCCATGATCCTGGATGAGGATGGCAACATGATCGACAGCCACCCGCCCTCAG : 173635

    308 : lyGluProLeuGlnPheValPheGluGluIleLysTrpGlnGlnGluLeuSerTrpGl :    326
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lyGluProLeuGlnPheValPheGluGluIleLysTrpGlnGlnGluLeuSerTrpGl
 173634 : GGGAGCCCCTCCAGTTTGTGTTTGAGGAGATCAAGTGGCAGCAGGAGCTGAGCTGGGA : 173578

    327 : uGluAlaAlaArgArgLeuGluValAlaMetTyrProPheLysLys  >>>> Targe :    342
          ||||||||||||||||||||||||||||||||||||||||||||||            
          uGluAlaAlaArgArgLeuGluValAlaMetTyrProPheLysLys++          
 173577 : GGAGGCCGCGCGGCGCCTGGAGGTGGCCATGTACCCCTTCAAGAAGgt.......... : 173528

    343 : t Intron 7 >>>>  ValThrTyrLeuProPheIleGluAlaPheAspHisAlaLy :    355
          359 bp           |||||||||||||||||||||||||||||||||||||||||
                         ++ValThrTyrLeuProPheIleGluAlaPheAspHisAlaLy
 173527 : ...............agGTCACCTATCTGCCATTCATCGAGGCCTTCGACCACGCCAA : 173132

    356 : sAlaLysAsnLysLeuValHisSerIleLeuLeuTrpGlyAlaLeuAspAspGlnSer :    374
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          sAlaLysAsnLysLeuValHisSerIleLeuLeuTrpGlyAlaLeuAspAspGlnSer
 173131 : GGCCAAGAACAAGCTGGTGCACTCAATTCTGCTGTGGGGGGCCCTGGATGACCAGTCC : 173075

    375 : CysUnk{G}  >>>> Target Intron 8 >>>>  {ly}SerGlyArgThrLeuA :    383
          |||   {|}           1076 bp           {||}||||||||||||||||
          Cys***{G}++                         ++{ly}SerGlyArgThrLeuA
 173074 : TGCTGA{G}gt.........................ag{GT}TCGGGGCGGACTCTCC : 171972

    384 : rgGluThrValLeuGluSerSerProIleIleAlaLeuLeuAsnGluSerPheIleSe :    402
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rgGluThrValLeuGluSerSerProIleIleAlaLeuLeuAsnGluSerPheIleSe
 171971 : GGGAGACTGTCCTGGAAAGTTCGCCCATCATCGCCCTCCTCAACGAGAGCTTCATCAG : 171915

    403 : rThrTrpSerLeuValArgGluLeuGluAspLeuGln  >>>> Target Intron  :    415
          |||||||||||||||||||||||||||||||||||||            86 bp    
          rThrTrpSerLeuValArgGluLeuGluAspLeuGln++                   
 171914 : CACTTGGTCCCTGGTGAGGGAGCTGGAAGACCTGCAGgt................... : 171874

    416 : 9 >>>>  AsnAspGlnGluAsnProSerHisLysLysLeuAlaAspLeuHisLeuGl :    431
                  |||:::||||||||||||||||||||||||||||||||||||||||||||
                ++AsnAsnGlnGluAsnProSerHisLysLysLeuAlaAspLeuHisLeuGl
 171873 : ......agAACAACCAGGAGAACCCGTCCCACAAGAAGCTAGCTGACCTGCACCTGGA : 171742

    432 : uLysTyrSerPheProValGluMetMetIleCysLeuProAsnGlyThrVal  >>>> :    449
          ||||||||||||||||||||||||||||||||||||||||||||||||||||      
          uLysTyrSerPheProValGluMetMetIleCysLeuProAsnGlyThrVal++    
 171741 : GAAGTACAGCTTCCCCGTGGAGATGATGATTTGTCTGCCCAACGGCACTGTGgt.... : 171686

    450 :  Target Intron 10 >>>>  ValHisHisIleAsnAlaAsnHisPheLeuAspI :    460
                1288 bp           |||||||||||||||||||||:::||||||||||
                                ++ValHisHisIleAsnAlaAsnTyrPheLeuAspI
 171685 : ......................agGTCCACCACATCAACGCCAACTACTTCTTGGATA : 170367

    461 : leThrSerMetLysProGluAspIleGluAsnAsnValPheSerPheSerSerThrPh :    479
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          leThrSerMetLysProGluAspIleGluAsnAsnValPheSerPheSerSerThrPh
 170366 : TCACCTCCATGAAGCCCGAGGATATTGAGAACAACGTCTTCAGCTTCTCGTCCACCTT : 170310

    480 : eGluAspProSerThrAlaThrTyrMetGlnPheLeuLysGluGlyLeuArgArgGly :    498
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          eGluAspProSerThrAlaThrTyrMetGlnPheLeuLysGluGlyLeuArgArgGly
 170309 : TGAAGACCCGTCCACGGCCACGTATATGCAGTTCCTGAAGGAGGGCCTTCGGCGTGGC : 170253

    499 : LeuProLeuLeuGlnPro :    504
          ||||||||||||||||||
          LeuProLeuLeuGlnPro
 170252 : CTGCCCCTCCTCCAGCCC : 170233

vulgar: SPP00000079_2.0 1 504 . gi|472267212|gb|KB717445.1| 182809 170232 - 2525 M 46 138 S 0 1 5 0 2 I 0 2940 3 0 2 S 1 2 M 44 132 5 0 2 I 0 2611 3 0 2 M 71 213 5 0 2 I 0 186 3 0 2 M 41 123 S 0 2 5 0 2 I 0 536 3 0 2 S 1 1 M 45 135 S 0 2 5 0 2 I 0 1594 3 0 2 S 1 1 M 27 81 5 0 2 I 0 368 3 0 2 M 63 189 5 0 2 I 0 355 3 0 2 M 35 105 S 0 1 5 0 2 I 0 1072 3 0 2 S 1 2 M 37 111 5 0 2 I 0 82 3 0 2 M 34 102 5 0 2 I 0 1284 3 0 2 M 56 168
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	gene	170233	182809	2525	-	.	gene_id 1 ; sequence SPP00000079_2.0 ; gene_orientation +
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	182671	182809	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	182671	182809	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	182669	182670	.	-	.	intron_id 1 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	179727	182670	.	-	.	intron_id 1
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	179727	179728	.	-	.	intron_id 0 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	179593	179726	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	179593	179726	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	179591	179592	.	-	.	intron_id 2 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	176978	179592	.	-	.	intron_id 2
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	176978	176979	.	-	.	intron_id 1 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	176765	176977	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	176765	176977	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	176763	176764	.	-	.	intron_id 3 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	176575	176764	.	-	.	intron_id 3
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	176575	176576	.	-	.	intron_id 2 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	176450	176574	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	176450	176574	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	176448	176449	.	-	.	intron_id 4 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	175910	176449	.	-	.	intron_id 4
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	175910	175911	.	-	.	intron_id 3 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	175772	175909	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	175772	175909	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	175770	175771	.	-	.	intron_id 5 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	174174	175771	.	-	.	intron_id 5
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	174174	174175	.	-	.	intron_id 4 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	174092	174173	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	174092	174173	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	174090	174091	.	-	.	intron_id 6 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	173720	174091	.	-	.	intron_id 6
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	173720	173721	.	-	.	intron_id 5 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	173531	173719	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	173531	173719	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	173529	173530	.	-	.	intron_id 7 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	173172	173530	.	-	.	intron_id 7
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	173172	173173	.	-	.	intron_id 6 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	173066	173171	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	173066	173171	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	173064	173065	.	-	.	intron_id 8 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	171990	173065	.	-	.	intron_id 8
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	171990	171991	.	-	.	intron_id 7 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	171877	171989	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	171877	171989	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	171875	171876	.	-	.	intron_id 9 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	171791	171876	.	-	.	intron_id 9
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	171791	171792	.	-	.	intron_id 8 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	171689	171790	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	171689	171790	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	171687	171688	.	-	.	intron_id 10 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	170401	171688	.	-	.	intron_id 10
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	170401	170402	.	-	.	intron_id 9 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	170233	170400	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	170233	170400	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	similarity	170233	182809	2525	-	.	alignment_id 1 ; Query SPP00000079_2.0 ; Align 182810 2 138 ; Align 179725 49 132 ; Align 176978 93 213 ; Align 176575 164 123 ; Align 175909 206 135 ; Align 174173 252 81 ; Align 173720 279 189 ; Align 173172 342 105 ; Align 171988 378 111 ; Align 171791 415 102 ; Align 170401 449 168
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis