Command line: [exonerate -m p2g --showtargetgff -q ./SelN_walrus.fa -t SelN_walrus.carpeta/genomic.fa]
Hostname: [ws101068]
C4 Alignment:
------------
Query: SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Walrus (Odobenus rosmarus)
Target: gi|472267212|gb|KB717445.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02739, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 2525
Query range: 1 -> 504
Target range: 182809 -> 170232
2 : GluProLeuProProLysGlnGluSerAlaLeuLysAlaLeuGlyThrGluGlyLeuP : 21
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GluProLeuProProLysGlnGluSerAlaLeuLysAlaLeuGlyThrGluGlyLeuP
182809 : GAGCCCCTTCCTCCCAAGCAGGAGTCCGCGCTGAAGGCCCTGGGGACGGAAGGCCTCT : 182752
22 : heLeuPheSerSerLeuAspThrAspArgAspMetTyrIleSerProGluGluPheLy : 40
||||||||||||||||||||...|||||||||||||||||||||||||||||||||||
heLeuPheSerSerLeuAspAlaAspArgAspMetTyrIleSerProGluGluPheLy
182751 : TTCTCTTTTCCTCCTTGGACGCCGACCGGGATATGTACATCAGCCCCGAGGAGTTCAA : 182695
41 : sProIleAlaGluLysLeuThr{G} >>>> Target Intron 1 >>>> {ly} : 48
||||||||||||||||||||||{|} 2944 bp {||}
sProIleAlaGluLysLeuThr{G}++ ++{ly}
182694 : GCCCATTGCTGAGAAGCTGACA{G}gt.........................ag{GG} : 179726
49 : SerAlaProAlaGlyGlyTyrGluGluAlaGluLeuAlaLeuAspProSerGluGluT : 68
|||...||||||......||||||||||||||||||||||||||||||||||||||||
SerValProAlaAlaSerTyrGluGluAlaGluLeuAlaLeuAspProSerGluGluT
179725 : TCCGTTCCTGCAGCCAGCTATGAGGAGGCGGAGCTGGCCCTTGACCCCAGTGAGGAGA : 179667
69 : hrLeuThrIleGluAlaArgPheGlnProLeuArgProGluSerMetThrLysSerLy : 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
hrLeuThrIleGluAlaArgPheGlnProLeuArgProGluSerMetThrLysSerLy
179666 : CGCTCACCATAGAAGCCCGATTCCAGCCTCTGCGCCCGGAGTCCATGACCAAGAGCAA : 179610
88 : sAspGlyPheLeuGly >>>> Target Intron 2 >>>> ValSerArgLeuA : 97
|||||||||||||||| 2615 bp |||||||||||||
sAspGlyPheLeuGly++ ++ValSerArgLeuA
179609 : AGATGGGTTCCTGGGGgt.........................agGTCTCCCGCCTGG : 176965
98 : laLeuSerGlyLeuArgAsnTrpThrThrAlaAlaSerProSerAlaValPheAlaAl : 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
laLeuSerGlyLeuArgAsnTrpThrThrAlaAlaSerProSerAlaValPheAlaAl
176964 : CCCTATCTGGCCTCCGCAACTGGACGACGGCAGCCTCGCCAAGTGCGGTATTCGCCGC : 176908
117 : aArgHisPheArgProPheLeuProProArgGlyArgValGluLeuGlyGluProTrp : 135
||||||||||||||||||||||||||||:::|||||||||||||||||||||||||||
aArgHisPheArgProPheLeuProProGlnGlyArgValGluLeuGlyGluProTrp
176907 : CCGCCACTTCCGGCCCTTCCTTCCTCCTCAGGGCCGGGTGGAGCTGGGCGAGCCCTGG : 176851
136 : TrpIleIleProSerGluLeuSerValPheThrGlyTyrLeuSerAsnAsnArgPheT : 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TrpIleIleProSerGluLeuSerValPheThrGlyTyrLeuSerAsnAsnArgPheT
176850 : TGGATCATCCCCAGTGAGCTGAGCGTCTTCACCGGCTATCTGTCCAACAACCGCTTCT : 176791
156 : yrProProProProLysGlyLysGlu >>>> Target Intron 3 >>>> Val : 164
|||||||||||||||||||||||||| 190 bp |||
yrProProProProLysGlyLysGlu++ ++Val
176790 : ATCCACCACCGCCCAAGGGCAAAGAGgt.........................agGTC : 176574
165 : IleIleHisArgLeuLeuSerMetPheHisProArgProPheValLysThrArgPheA : 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IleIleHisArgLeuLeuSerMetPheHisProArgProPheValLysThrArgPheA
176573 : ATCATCCACCGGCTCCTGAGCATGTTCCACCCTCGGCCCTTCGTGAAGACCCGCTTTG : 176514
185 : laProGlnGlyAlaValAlaCysLeuThrAlaIleSerAspPheTyrTyrThrValMe : 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
laProGlnGlyAlaValAlaCysLeuThrAlaIleSerAspPheTyrTyrThrValMe
176513 : CCCCTCAGGGGGCTGTCGCCTGCCTGACGGCCATCAGCGACTTCTACTACACTGTGAT : 176457
204 : tPhe{Ar} >>>> Target Intron 4 >>>> {g}IleHisAlaGluPheGln : 211
||||{||} 540 bp {|}||||||||||||||||||
tPhe{Ar}++ ++{g}IleHisAlaGluPheGln
176456 : GTTC{CG}gt.........................ag{G}ATCCACGCCGAGTTCCAG : 175893
212 : LeuSerGluProProAspPheProPheTrpPheSerProGlyGlnPheThrGlyHisI : 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LeuSerGluProProAspPheProPheTrpPheSerProGlyGlnPheThrGlyHisI
175892 : CTCAGCGAGCCGCCTGACTTCCCCTTCTGGTTCTCACCTGGCCAGTTCACCGGCCACA : 175833
232 : leIleLeuSerLysAspAlaThrHisIleArgAspPheArgLeuPheValProAsnHi : 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
leIleLeuSerLysAspAlaThrHisIleArgAspPheArgLeuPheValProAsnHi
175832 : TCATCCTCTCCAAAGACGCCACTCATATCCGAGATTTCCGGCTCTTCGTGCCCAACCA : 175776
251 : s{Ar} >>>> Target Intron 5 >>>> {g}SerLeuAsnValAspMetGlu : 258
|{||} 1598 bp {|}|||||||||||||||||||||
s{Ar}++ ++{g}SerLeuAsnValAspMetGlu
175775 : C{AG}gt.........................ag{G}TCTCTGAACGTGGACATGGAG : 174154
259 : TrpLeuTyrGlyAlaGlyGluSerSerAsnMetGluValAspIleGlyTyrIleProG : 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
TrpLeuTyrGlyAlaGlyGluSerSerAsnMetGluValAspIleGlyTyrIleProG
174153 : TGGCTGTACGGGGCCGGTGAGAGCAGCAACATGGAGGTGGACATTGGCTACATCCCCC : 174094
279 : ln >>>> Target Intron 6 >>>> MetGluLeuGluAlaLeuGlyProSer : 287
|| 372 bp |||||||||||||||||||||||||||
ln++ ++MetGluLeuGluAlaLeuGlyProSer
174093 : AGgt.........................agATGGAGCTGGAGGCCCTGGGCCCATCA : 173695
288 : ValProSerMetIleLeuAspGluAspGlyAsnMetIleAsnSerArgProProSerG : 307
|||||||||||||||||||||||||||||||||||||||:::|||...||||||||||
ValProSerMetIleLeuAspGluAspGlyAsnMetIleAspSerHisProProSerG
173694 : GTCCCCTCCATGATCCTGGATGAGGATGGCAACATGATCGACAGCCACCCGCCCTCAG : 173635
308 : lyGluProLeuGlnPheValPheGluGluIleLysTrpGlnGlnGluLeuSerTrpGl : 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
lyGluProLeuGlnPheValPheGluGluIleLysTrpGlnGlnGluLeuSerTrpGl
173634 : GGGAGCCCCTCCAGTTTGTGTTTGAGGAGATCAAGTGGCAGCAGGAGCTGAGCTGGGA : 173578
327 : uGluAlaAlaArgArgLeuGluValAlaMetTyrProPheLysLys >>>> Targe : 342
||||||||||||||||||||||||||||||||||||||||||||||
uGluAlaAlaArgArgLeuGluValAlaMetTyrProPheLysLys++
173577 : GGAGGCCGCGCGGCGCCTGGAGGTGGCCATGTACCCCTTCAAGAAGgt.......... : 173528
343 : t Intron 7 >>>> ValThrTyrLeuProPheIleGluAlaPheAspHisAlaLy : 355
359 bp |||||||||||||||||||||||||||||||||||||||||
++ValThrTyrLeuProPheIleGluAlaPheAspHisAlaLy
173527 : ...............agGTCACCTATCTGCCATTCATCGAGGCCTTCGACCACGCCAA : 173132
356 : sAlaLysAsnLysLeuValHisSerIleLeuLeuTrpGlyAlaLeuAspAspGlnSer : 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
sAlaLysAsnLysLeuValHisSerIleLeuLeuTrpGlyAlaLeuAspAspGlnSer
173131 : GGCCAAGAACAAGCTGGTGCACTCAATTCTGCTGTGGGGGGCCCTGGATGACCAGTCC : 173075
375 : CysUnk{G} >>>> Target Intron 8 >>>> {ly}SerGlyArgThrLeuA : 383
||| {|} 1076 bp {||}||||||||||||||||
Cys***{G}++ ++{ly}SerGlyArgThrLeuA
173074 : TGCTGA{G}gt.........................ag{GT}TCGGGGCGGACTCTCC : 171972
384 : rgGluThrValLeuGluSerSerProIleIleAlaLeuLeuAsnGluSerPheIleSe : 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rgGluThrValLeuGluSerSerProIleIleAlaLeuLeuAsnGluSerPheIleSe
171971 : GGGAGACTGTCCTGGAAAGTTCGCCCATCATCGCCCTCCTCAACGAGAGCTTCATCAG : 171915
403 : rThrTrpSerLeuValArgGluLeuGluAspLeuGln >>>> Target Intron : 415
||||||||||||||||||||||||||||||||||||| 86 bp
rThrTrpSerLeuValArgGluLeuGluAspLeuGln++
171914 : CACTTGGTCCCTGGTGAGGGAGCTGGAAGACCTGCAGgt................... : 171874
416 : 9 >>>> AsnAspGlnGluAsnProSerHisLysLysLeuAlaAspLeuHisLeuGl : 431
|||:::||||||||||||||||||||||||||||||||||||||||||||
++AsnAsnGlnGluAsnProSerHisLysLysLeuAlaAspLeuHisLeuGl
171873 : ......agAACAACCAGGAGAACCCGTCCCACAAGAAGCTAGCTGACCTGCACCTGGA : 171742
432 : uLysTyrSerPheProValGluMetMetIleCysLeuProAsnGlyThrVal >>>> : 449
||||||||||||||||||||||||||||||||||||||||||||||||||||
uLysTyrSerPheProValGluMetMetIleCysLeuProAsnGlyThrVal++
171741 : GAAGTACAGCTTCCCCGTGGAGATGATGATTTGTCTGCCCAACGGCACTGTGgt.... : 171686
450 : Target Intron 10 >>>> ValHisHisIleAsnAlaAsnHisPheLeuAspI : 460
1288 bp |||||||||||||||||||||:::||||||||||
++ValHisHisIleAsnAlaAsnTyrPheLeuAspI
171685 : ......................agGTCCACCACATCAACGCCAACTACTTCTTGGATA : 170367
461 : leThrSerMetLysProGluAspIleGluAsnAsnValPheSerPheSerSerThrPh : 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
leThrSerMetLysProGluAspIleGluAsnAsnValPheSerPheSerSerThrPh
170366 : TCACCTCCATGAAGCCCGAGGATATTGAGAACAACGTCTTCAGCTTCTCGTCCACCTT : 170310
480 : eGluAspProSerThrAlaThrTyrMetGlnPheLeuLysGluGlyLeuArgArgGly : 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
eGluAspProSerThrAlaThrTyrMetGlnPheLeuLysGluGlyLeuArgArgGly
170309 : TGAAGACCCGTCCACGGCCACGTATATGCAGTTCCTGAAGGAGGGCCTTCGGCGTGGC : 170253
499 : LeuProLeuLeuGlnPro : 504
||||||||||||||||||
LeuProLeuLeuGlnPro
170252 : CTGCCCCTCCTCCAGCCC : 170233
vulgar: SPP00000079_2.0 1 504 . gi|472267212|gb|KB717445.1| 182809 170232 - 2525 M 46 138 S 0 1 5 0 2 I 0 2940 3 0 2 S 1 2 M 44 132 5 0 2 I 0 2611 3 0 2 M 71 213 5 0 2 I 0 186 3 0 2 M 41 123 S 0 2 5 0 2 I 0 536 3 0 2 S 1 1 M 45 135 S 0 2 5 0 2 I 0 1594 3 0 2 S 1 1 M 27 81 5 0 2 I 0 368 3 0 2 M 63 189 5 0 2 I 0 355 3 0 2 M 35 105 S 0 1 5 0 2 I 0 1072 3 0 2 S 1 2 M 37 111 5 0 2 I 0 82 3 0 2 M 34 102 5 0 2 I 0 1284 3 0 2 M 56 168
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local gene 170233 182809 2525 - . gene_id 1 ; sequence SPP00000079_2.0 ; gene_orientation +
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 182671 182809 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 182671 182809 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 182669 182670 . - . intron_id 1 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 179727 182670 . - . intron_id 1
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 179727 179728 . - . intron_id 0 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 179593 179726 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 179593 179726 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 179591 179592 . - . intron_id 2 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 176978 179592 . - . intron_id 2
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 176978 176979 . - . intron_id 1 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 176765 176977 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 176765 176977 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 176763 176764 . - . intron_id 3 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 176575 176764 . - . intron_id 3
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 176575 176576 . - . intron_id 2 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 176450 176574 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 176450 176574 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 176448 176449 . - . intron_id 4 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 175910 176449 . - . intron_id 4
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 175910 175911 . - . intron_id 3 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 175772 175909 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 175772 175909 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 175770 175771 . - . intron_id 5 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 174174 175771 . - . intron_id 5
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 174174 174175 . - . intron_id 4 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 174092 174173 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 174092 174173 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 174090 174091 . - . intron_id 6 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 173720 174091 . - . intron_id 6
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 173720 173721 . - . intron_id 5 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 173531 173719 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 173531 173719 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 173529 173530 . - . intron_id 7 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 173172 173530 . - . intron_id 7
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 173172 173173 . - . intron_id 6 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 173066 173171 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 173066 173171 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 173064 173065 . - . intron_id 8 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 171990 173065 . - . intron_id 8
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 171990 171991 . - . intron_id 7 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 171877 171989 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 171877 171989 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 171875 171876 . - . intron_id 9 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 171791 171876 . - . intron_id 9
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 171791 171792 . - . intron_id 8 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 171689 171790 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 171689 171790 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 171687 171688 . - . intron_id 10 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 170401 171688 . - . intron_id 10
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 170401 170402 . - . intron_id 9 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 170233 170400 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 170233 170400 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local similarity 170233 182809 2525 - . alignment_id 1 ; Query SPP00000079_2.0 ; Align 182810 2 138 ; Align 179725 49 132 ; Align 176978 93 213 ; Align 176575 164 123 ; Align 175909 206 135 ; Align 174173 252 81 ; Align 173720 279 189 ; Align 173172 342 105 ; Align 171988 378 111 ; Align 171791 415 102 ; Align 170401 449 168
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis