TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Walrus
(Odobenus rosmarus)
         (504 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472267212|gb|KB717445.1| Leptonychotes weddellii isolate WS11...   153   2e-35
gi|472269546|gb|KB715143.1| Leptonychotes weddellii isolate WS11...    35   9.3  

>gi|472267212|gb|KB717445.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold02739, whole genome
              shotgun sequence
          Length = 322709

 Score =  153 bits (387), Expect = 2e-35
 Identities = 71/72 (98%), Positives = 72/72 (100%)
 Frame = -2

Query: 93     VSRLALSGLRNWTTAASPSAVFAARHFRPFLPPRGRVELGEPWWIIPSELSVFTGYLSNN 152
              VSRLALSGLRNWTTAASPSAVFAARHFRPFLPP+GRVELGEPWWIIPSELSVFTGYLSNN
Sbjct: 176977 VSRLALSGLRNWTTAASPSAVFAARHFRPFLPPQGRVELGEPWWIIPSELSVFTGYLSNN 176798

Query: 153    RFYPPPPKGKEV 164
              RFYPPPPKGKEV
Sbjct: 176797 RFYPPPPKGKEV 176762



 Score =  131 bits (330), Expect = 1e-28
 Identities = 63/67 (94%), Positives = 65/67 (97%)
 Frame = -2

Query: 276    IPQMELEALGPSVPSMILDEDGNMINSRPPSGEPLQFVFEEIKWQQELSWEEAARRLEVA 335
              + QMELEALGPSVPSMILDEDGNMI+S PPSGEPLQFVFEEIKWQQELSWEEAARRLEVA
Sbjct: 173728 LAQMELEALGPSVPSMILDEDGNMIDSHPPSGEPLQFVFEEIKWQQELSWEEAARRLEVA 173549

Query: 336    MYPFKKV 342
              MYPFKKV
Sbjct: 173548 MYPFKKV 173528



 Score =  115 bits (289), Expect = 5e-24
 Identities = 55/56 (98%), Positives = 56/56 (100%)
 Frame = -3

Query: 449    VHHINANHFLDITSMKPEDIENNVFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP 504
              VHHINAN+FLDITSMKPEDIENNVFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP
Sbjct: 170400 VHHINANYFLDITSMKPEDIENNVFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP 170233



 Score =  105 bits (263), Expect = 6e-21
 Identities = 47/47 (100%), Positives = 47/47 (100%)
 Frame = -3

Query: 205    RIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHIRDFRLFVPNHR 251
              RIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHIRDFRLFVPNHR
Sbjct: 175911 RIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHIRDFRLFVPNHR 175771



 Score = 97.1 bits (240), Expect = 3e-18
 Identities = 50/64 (78%), Positives = 51/64 (79%)
 Frame = -2

Query: 2      EPLPPKQESALKALGTEGLFLFSSLDTDRDMYISPEEFKPIAEKLTGSAPAGGYEEAELA 61
              EPLPPKQESALKALGTEGLFLFSSLD DRDMYISPEEFKPIAEKLTG+    G      A
Sbjct: 182809 EPLPPKQESALKALGTEGLFLFSSLDADRDMYISPEEFKPIAEKLTGTRRGWGLGRGARA 182630

Query: 62     LDPS 65
                PS
Sbjct: 182629 SWPS 182618



 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 48/65 (73%), Positives = 50/65 (76%), Gaps = 4/65 (6%)
 Frame = -3

Query: 157    PPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRI----HAEFQL 212
              P P   +VIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFR     H  + L
Sbjct: 176595 PLPAPSQVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRCVVLRHPPWPL 176416

Query: 213    SEPPD 217
              S   D
Sbjct: 176415 SRAGD 176401



 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 46/54 (85%), Positives = 46/54 (85%)
 Frame = -3

Query: 41     PIAEKLTGSAPAGGYEEAELALDPSEETLTIEARFQPLRPESMTKSKDGFLGVS 94
              P    L GS PA  YEEAELALDPSEETLTIEARFQPLRPESMTKSKDGFLGVS
Sbjct: 179748 PATVCLLGSVPAASYEEAELALDPSEETLTIEARFQPLRPESMTKSKDGFLGVS 179587



 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 38/46 (82%), Positives = 40/46 (86%)
 Frame = -1

Query: 338    PFKKVTYLPFIEAFDHAKAKNKLVHSILLWGALDDQSCXGSGRTLR 383
              P+ +VTYLPFIEAFDHAKAKNKLVHSILLWGALDDQSC G G   R
Sbjct: 173183 PWPQVTYLPFIEAFDHAKAKNKLVHSILLWGALDDQSC*GEGDPAR 173046



 Score = 77.4 bits (189), Expect(2) = 8e-29
 Identities = 35/36 (97%), Positives = 36/36 (100%)
 Frame = -2

Query: 414    QNDQENPSHKKLADLHLEKYSFPVEMMICLPNGTVV 449
              QN+QENPSHKKLADLHLEKYSFPVEMMICLPNGTVV
Sbjct: 171793 QNNQENPSHKKLADLHLEKYSFPVEMMICLPNGTVV 171686



 Score = 75.5 bits (184), Expect(2) = 8e-29
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -3

Query: 377    GSGRTLRETVLESSPIIALLNESFISTWSLVRELEDLQ 414
              GSGRTLRETVLESSPIIALLNESFISTWSLVRELEDLQ
Sbjct: 171990 GSGRTLRETVLESSPIIALLNESFISTWSLVRELEDLQ 171877



 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 30/42 (71%), Positives = 34/42 (80%)
 Frame = -2

Query: 247    VPNHRSLNVDMEWLYGAGESSNMEVDIGYIPQMELEALGPSV 288
              +P  RSLNVDMEWLYGAGESSNMEVDIGYIPQ+  + +   V
Sbjct: 174187 LPVTRSLNVDMEWLYGAGESSNMEVDIGYIPQVSTQGVPTQV 174062


>gi|472269546|gb|KB715143.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00437, whole genome
              shotgun sequence
          Length = 1311660

 Score = 35.4 bits (80), Expect = 9.3
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -1

Query: 286    PSVPSMIL---DEDGNMINSRPPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYPFKKV 342
              P++PS+IL         IN  PPS     F++  + +   +S E+  R    ++YPF   
Sbjct: 397167 PNLPSVILLRIQPCPPKINVEPPSTSKYDFIWNRV-FADVIS*EKVTRGKP*SLYPFPMH 396991

Query: 343    TYLPFIEAFDHAK 355
                LPF+E+ D A+
Sbjct: 396990 HILPFLESLDTAE 396952


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.319    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,085,196,551
Number of Sequences: 16710
Number of extensions: 36366764
Number of successful extensions: 139670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 692
Number of HSP's that attempted gapping in prelim test: 128569
Number of HSP's gapped (non-prelim): 33865
length of query: 504
length of database: 1,052,295,386
effective HSP length: 137
effective length of query: 367
effective length of database: 1,050,006,116
effective search space: 385352244572
effective search space used: 385352244572
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)