TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Walrus
(Odobenus rosmarus)
(504 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472267212|gb|KB717445.1| Leptonychotes weddellii isolate WS11... 153 2e-35
gi|472269546|gb|KB715143.1| Leptonychotes weddellii isolate WS11... 35 9.3
>gi|472267212|gb|KB717445.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02739, whole genome
shotgun sequence
Length = 322709
Score = 153 bits (387), Expect = 2e-35
Identities = 71/72 (98%), Positives = 72/72 (100%)
Frame = -2
Query: 93 VSRLALSGLRNWTTAASPSAVFAARHFRPFLPPRGRVELGEPWWIIPSELSVFTGYLSNN 152
VSRLALSGLRNWTTAASPSAVFAARHFRPFLPP+GRVELGEPWWIIPSELSVFTGYLSNN
Sbjct: 176977 VSRLALSGLRNWTTAASPSAVFAARHFRPFLPPQGRVELGEPWWIIPSELSVFTGYLSNN 176798
Query: 153 RFYPPPPKGKEV 164
RFYPPPPKGKEV
Sbjct: 176797 RFYPPPPKGKEV 176762
Score = 131 bits (330), Expect = 1e-28
Identities = 63/67 (94%), Positives = 65/67 (97%)
Frame = -2
Query: 276 IPQMELEALGPSVPSMILDEDGNMINSRPPSGEPLQFVFEEIKWQQELSWEEAARRLEVA 335
+ QMELEALGPSVPSMILDEDGNMI+S PPSGEPLQFVFEEIKWQQELSWEEAARRLEVA
Sbjct: 173728 LAQMELEALGPSVPSMILDEDGNMIDSHPPSGEPLQFVFEEIKWQQELSWEEAARRLEVA 173549
Query: 336 MYPFKKV 342
MYPFKKV
Sbjct: 173548 MYPFKKV 173528
Score = 115 bits (289), Expect = 5e-24
Identities = 55/56 (98%), Positives = 56/56 (100%)
Frame = -3
Query: 449 VHHINANHFLDITSMKPEDIENNVFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP 504
VHHINAN+FLDITSMKPEDIENNVFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP
Sbjct: 170400 VHHINANYFLDITSMKPEDIENNVFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP 170233
Score = 105 bits (263), Expect = 6e-21
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = -3
Query: 205 RIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHIRDFRLFVPNHR 251
RIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHIRDFRLFVPNHR
Sbjct: 175911 RIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHIRDFRLFVPNHR 175771
Score = 97.1 bits (240), Expect = 3e-18
Identities = 50/64 (78%), Positives = 51/64 (79%)
Frame = -2
Query: 2 EPLPPKQESALKALGTEGLFLFSSLDTDRDMYISPEEFKPIAEKLTGSAPAGGYEEAELA 61
EPLPPKQESALKALGTEGLFLFSSLD DRDMYISPEEFKPIAEKLTG+ G A
Sbjct: 182809 EPLPPKQESALKALGTEGLFLFSSLDADRDMYISPEEFKPIAEKLTGTRRGWGLGRGARA 182630
Query: 62 LDPS 65
PS
Sbjct: 182629 SWPS 182618
Score = 94.0 bits (232), Expect = 2e-17
Identities = 48/65 (73%), Positives = 50/65 (76%), Gaps = 4/65 (6%)
Frame = -3
Query: 157 PPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRI----HAEFQL 212
P P +VIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFR H + L
Sbjct: 176595 PLPAPSQVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRCVVLRHPPWPL 176416
Query: 213 SEPPD 217
S D
Sbjct: 176415 SRAGD 176401
Score = 91.3 bits (225), Expect = 1e-16
Identities = 46/54 (85%), Positives = 46/54 (85%)
Frame = -3
Query: 41 PIAEKLTGSAPAGGYEEAELALDPSEETLTIEARFQPLRPESMTKSKDGFLGVS 94
P L GS PA YEEAELALDPSEETLTIEARFQPLRPESMTKSKDGFLGVS
Sbjct: 179748 PATVCLLGSVPAASYEEAELALDPSEETLTIEARFQPLRPESMTKSKDGFLGVS 179587
Score = 81.3 bits (199), Expect = 1e-13
Identities = 38/46 (82%), Positives = 40/46 (86%)
Frame = -1
Query: 338 PFKKVTYLPFIEAFDHAKAKNKLVHSILLWGALDDQSCXGSGRTLR 383
P+ +VTYLPFIEAFDHAKAKNKLVHSILLWGALDDQSC G G R
Sbjct: 173183 PWPQVTYLPFIEAFDHAKAKNKLVHSILLWGALDDQSC*GEGDPAR 173046
Score = 77.4 bits (189), Expect(2) = 8e-29
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = -2
Query: 414 QNDQENPSHKKLADLHLEKYSFPVEMMICLPNGTVV 449
QN+QENPSHKKLADLHLEKYSFPVEMMICLPNGTVV
Sbjct: 171793 QNNQENPSHKKLADLHLEKYSFPVEMMICLPNGTVV 171686
Score = 75.5 bits (184), Expect(2) = 8e-29
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = -3
Query: 377 GSGRTLRETVLESSPIIALLNESFISTWSLVRELEDLQ 414
GSGRTLRETVLESSPIIALLNESFISTWSLVRELEDLQ
Sbjct: 171990 GSGRTLRETVLESSPIIALLNESFISTWSLVRELEDLQ 171877
Score = 64.7 bits (156), Expect = 1e-08
Identities = 30/42 (71%), Positives = 34/42 (80%)
Frame = -2
Query: 247 VPNHRSLNVDMEWLYGAGESSNMEVDIGYIPQMELEALGPSV 288
+P RSLNVDMEWLYGAGESSNMEVDIGYIPQ+ + + V
Sbjct: 174187 LPVTRSLNVDMEWLYGAGESSNMEVDIGYIPQVSTQGVPTQV 174062
>gi|472269546|gb|KB715143.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00437, whole genome
shotgun sequence
Length = 1311660
Score = 35.4 bits (80), Expect = 9.3
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -1
Query: 286 PSVPSMIL---DEDGNMINSRPPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYPFKKV 342
P++PS+IL IN PPS F++ + + +S E+ R ++YPF
Sbjct: 397167 PNLPSVILLRIQPCPPKINVEPPSTSKYDFIWNRV-FADVIS*EKVTRGKP*SLYPFPMH 396991
Query: 343 TYLPFIEAFDHAK 355
LPF+E+ D A+
Sbjct: 396990 HILPFLESLDTAE 396952
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.319 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,085,196,551
Number of Sequences: 16710
Number of extensions: 36366764
Number of successful extensions: 139670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 692
Number of HSP's that attempted gapping in prelim test: 128569
Number of HSP's gapped (non-prelim): 33865
length of query: 504
length of database: 1,052,295,386
effective HSP length: 137
effective length of query: 367
effective length of database: 1,050,006,116
effective search space: 385352244572
effective search space used: 385352244572
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)