Command line: [exonerate -m p2g --showtargetgff -q ./SelN.fa -t SelN.carpeta/genomic.fa]
Hostname: [ws101095]
C4 Alignment:
------------
Query: SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Human (Homo sapiens)
Target: gi|472267212|gb|KB717445.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02739, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 2256
Query range: 59 -> 590
Target range: 182794 -> 170232
60 : ArgGlnGluLeuAlaLeuLysThrLeuGlyThrAspGlyLeuPheLeuPheSerSerL : 79
!:!||||||! !|||||||||.!!|||||||||!!:||||||||||||||||||||||
LysGlnGluSerAlaLeuLysAlaLeuGlyThrGluGlyLeuPheLeuPheSerSerL
182794 : AAGCAGGAGTCCGCGCTGAAGGCCCTGGGGACGGAAGGCCTCTTTCTCTTTTCCTCCT : 182737
80 : euAspThrAspGlyAspMetTyrIleSerProGluGluPheLysProIleAlaGluLy : 98
|||||.!!||| !!||||||||||||||||||||||||||||||||||||||||||||
euAspAlaAspArgAspMetTyrIleSerProGluGluPheLysProIleAlaGluLy
182736 : TGGACGCCGACCGGGATATGTACATCAGCCCCGAGGAGTTCAAGCCCATTGCTGAGAA : 182680
99 : sLeuThrGlySer{Cy} >>>> Target Intron 1 >>>> {s}SerValThr : 106
||||||||||!!!{ !} 2839 bp {!}! ! ! !
sLeuThrGlyThr{Se}+- +-{r}PheGlnCys
182679 : GCTGACAGGTACC{AG}ga.........................ac{C}TTCCAGTGT : 179817
107 : GlnThrGlyValGlnTrpCysSerHisSerSerLeuGlnProGlnLeuProTrpLeuA : 126
! ! !! ! !||| |||! !!.!!.! ! ||| ! ! ! !!! !.
GlyGlyArgArgGlyTrpThrSerProLysLysArgGlyProAlaAlaGlyGlyGlnG
179816 : GGGGGGAGAAGGGGGTGGACGTCCCCCAAGAAGAGAGGCCCTGCAGCCGGAGGGCAGG : 179757
127 : snUnkSerSerCysLeuSerLeuLeuArgSerThrProAlaAlaSerCysGluGluGl : 145
.! ||| !!... ! !! !|||! !.!!:!! ! !!|||:!! !! ! |||||
lyArgSerProAlaThrValCysLeuLeuGlySerValProAlaAlaSerTyrGluGl
179756 : GCCGCTCTCCAGCAACTGTGTGTCTCCTAGGGTCCGTTCCTGCAGCCAGCTATGAGGA : 179700
146 : u<->GluLeuProProAspProSerGluGluThrLeuThrIleGluAlaArgPheGln : 163
| |||||| !!! !||||||||||||||||||||||||||||||||||||||||||
uAlaGluLeuAlaLeuAspProSerGluGluThrLeuThrIleGluAlaArgPheGln
179699 : GGCGGAGCTGGCCCTTGACCCCAGTGAGGAGACGCTCACCATAGAAGCCCGATTCCAG : 179643
164 : ProLeuLeuProGluThrMetThrLysSerLysAspGlyPheLeuGly >>>> Tar : 180
||||||! !||||||:!!||||||||||||||||||||||||||||||
ProLeuArgProGluSerMetThrLysSerLysAspGlyPheLeuGly++
179642 : CCTCTGCGCCCGGAGTCCATGACCAAGAGCAAAGATGGGTTCCTGGGGgt........ : 179590
181 : get Intron 2 >>>> ValSerArgLeuAlaLeuSerGlyLeuArgAsnTrpThr : 192
2615 bp |||||||||||||||||||||||||||||||||||||||
++ValSerArgLeuAlaLeuSerGlyLeuArgAsnTrpThr
179589 : .................agGTCTCCCGCCTGGCCCTATCTGGCCTCCGCAACTGGACG : 176941
193 : AlaAlaAlaSerProSerAlaValPheAlaThrArgHisPheGlnProPheLeuProP : 212
.!!|||||||||||||||||||||||||||.!!|||||||||!:!|||||||||||||
ThrAlaAlaSerProSerAlaValPheAlaAlaArgHisPheArgProPheLeuProP
176940 : ACGGCAGCCTCGCCAAGTGCGGTATTCGCCGCCCGCCACTTCCGGCCCTTCCTTCCTC : 176881
213 : roProGlyGln<->GluLeuGlyGluProTrpTrpIleIleProSerGluLeuSerMe : 230
||! !|||!:! ||||||||||||||||||||||||||||||||||||||||||:!
roGlnGlyArgValGluLeuGlyGluProTrpTrpIleIleProSerGluLeuSerVa
176880 : CTCAGGGCCGGGTGGAGCTGGGCGAGCCCTGGTGGATCATCCCCAGTGAGCTGAGCGT : 176824
231 : tPheThrGlyTyrLeuSerAsnAsnArgPheTyrProProProProLysGlyLysGlu : 249
:|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
lPheThrGlyTyrLeuSerAsnAsnArgPheTyrProProProProLysGlyLysGlu
176823 : CTTCACCGGCTATCTGTCCAACAACCGCTTCTATCCACCACCGCCCAAGGGCAAAGAG : 176767
250 : >>>> Target Intron 3 >>>> ValIleIleHisArgLeuLeuSerMetPh : 259
190 bp |||||||||||||||||||||||||||||
++ ++ValIleIleHisArgLeuLeuSerMetPh
176766 : gt.........................agGTCATCATCCACCGGCTCCTGAGCATGTT : 176547
260 : eHisProArgProPheValLysThrArgPheAlaProGlnGlyAlaValAlaCysLeu : 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
eHisProArgProPheValLysThrArgPheAlaProGlnGlyAlaValAlaCysLeu
176546 : CCACCCTCGGCCCTTCGTGAAGACCCGCTTTGCCCCTCAGGGGGCTGTCGCCTGCCTG : 176490
279 : ThrAlaIleSerAspPheTyrTyrThrValMetPhe{Ar} >>>> Target Intr : 291
||||||||||||||||||||||||||||||||||||{||} 540 bp
ThrAlaIleSerAspPheTyrTyrThrValMetPhe{Ar}++
176489 : ACGGCCATCAGCGACTTCTACTACACTGTGATGTTC{CG}gt................ : 176447
292 : on 4 >>>> {g}IleHisAlaGluPheGlnLeuSerGluProProAspPheProPh : 306
{|}||||||||||||||||||||||||||||||||||||||||||||
++{g}IleHisAlaGluPheGlnLeuSerGluProProAspPheProPh
176446 : .........ag{G}ATCCACGCCGAGTTCCAGCTCAGCGAGCCGCCTGACTTCCCCTT : 175866
307 : eTrpPheSerProAlaGlnPheThrGlyHisIleIleLeuSerLysAspAlaThrHis : 325
|||||||||||||!.!||||||||||||||||||||||||||||||||||||||||||
eTrpPheSerProGlyGlnPheThrGlyHisIleIleLeuSerLysAspAlaThrHis
175865 : CTGGTTCTCACCTGGCCAGTTCACCGGCCACATCATCCTCTCCAAAGACGCCACTCAT : 175809
326 : ValArgAspPheArgLeuPheValProAsnHis{Ar} >>>> Target Intron : 337
:!!||||||||||||||||||||||||||||||{||} 1598 bp
IleArgAspPheArgLeuPheValProAsnHis{Ar}++
175808 : ATCCGAGATTTCCGGCTCTTCGTGCCCAACCAC{AG}gt................... : 175769
338 : 5 >>>> {g}SerLeuAsnValAspMetGluTrpLeuTyrGlyAlaSerGluSerSe : 353
{|}||||||||||||||||||||||||||||||||||||.!!||||||||
++{g}SerLeuAsnValAspMetGluTrpLeuTyrGlyAlaGlyGluSerSe
175768 : ......ag{G}TCTCTGAACGTGGACATGGAGTGGCTGTACGGGGCCGGTGAGAGCAG : 174127
354 : rAsnMetGluValAspIleGlyTyrIleProGln >>>> Target Intron 6 > : 365
|||||||||||||||||||||||||||||||||| 372 bp
rAsnMetGluValAspIleGlyTyrIleProGln++
174126 : CAACATGGAGGTGGACATTGGCTACATCCCCCAGgt...................... : 174089
366 : >>> MetGluLeuGluAlaThrGlyProSerValProSerValIleLeuAspGluAs : 382
||||||||||||||| !||||||||||||||||||:!!||||||||||||||
++MetGluLeuGluAlaLeuGlyProSerValProSerMetIleLeuAspGluAs
174088 : ...agATGGAGCTGGAGGCCCTGGGCCCATCAGTCCCCTCCATGATCCTGGATGAGGA : 173668
383 : pGlySerMetIleAspSerHisLeuProSerGlyGluProLeuGlnPheValPheGlu : 401
||||!:!|||||||||||||||! !|||||||||||||||||||||||||||||||||
pGlyAsnMetIleAspSerHisProProSerGlyGluProLeuGlnPheValPheGlu
173667 : TGGCAACATGATCGACAGCCACCCGCCCTCAGGGGAGCCCCTCCAGTTTGTGTTTGAG : 173611
402 : GluIleLysTrpGlnGlnGluLeuSerTrpGluGluAlaAlaArgArgLeuGluValA : 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GluIleLysTrpGlnGlnGluLeuSerTrpGluGluAlaAlaArgArgLeuGluValA
173610 : GAGATCAAGTGGCAGCAGGAGCTGAGCTGGGAGGAGGCCGCGCGGCGCCTGGAGGTGG : 173551
422 : laMetTyrProPheLysLys >>>> Target Intron 7 >>>> ValSerTyr : 430
|||||||||||||||||||| 359 bp |||!!!|||
laMetTyrProPheLysLys++ ++ValThrTyr
173550 : CCATGTACCCCTTCAAGAAGgt.........................agGTCACCTAT : 173165
431 : LeuProPheThrGluAlaPheAspArgAlaLysAlaGluAsnLysLeuValHisSerI : 450
|||||||||! !||||||||||||!.!|||||||||:!!|||||||||||||||||||
LeuProPheIleGluAlaPheAspHisAlaLysAlaLysAsnLysLeuValHisSerI
173164 : CTGCCATTCATCGAGGCCTTCGACCACGCCAAGGCCAAGAACAAGCTGGTGCACTCAA : 173105
451 : leLeuLeuTrpGlyAlaLeuAspAspGlnSerCysUnk{G} >>>> Target Int : 463
||||||||||||||||||||||||||||||||||| {|} 1076 b
leLeuLeuTrpGlyAlaLeuAspAspGlnSerCys***{G}++
173104 : TTCTGCTGTGGGGGGCCCTGGATGACCAGTCCTGCTGA{G}gt............... : 173063
464 : ron 8 >>>> {ly}SerGlyArgThrLeuArgGluThrValLeuGluSerSerPro : 477
p {||}||||||||||||||||||||||||||||||||||||||||||
++{ly}SerGlyArgThrLeuArgGluThrValLeuGluSerSerPro
173062 : ..........ag{GT}TCGGGGCGGACTCTCCGGGAGACTGTCCTGGAAAGTTCGCCC : 171948
478 : IleLeuThrLeuLeuAsnGluSerPheIleSerThrTrpSerLeuValLysGluLeuG : 497
|||:!!.!!|||||||||||||||||||||||||||||||||||||||!:!|||||||
IleIleAlaLeuLeuAsnGluSerPheIleSerThrTrpSerLeuValArgGluLeuG
171947 : ATCATCGCCCTCCTCAACGAGAGCTTCATCAGCACTTGGTCCCTGGTGAGGGAGCTGG : 171888
498 : luGluLeuGln >>>> Target Intron 9 >>>> AsnAsnGlnGluAsnSer : 506
||!!:|||||| 86 bp ||||||||||||||| !!
luAspLeuGln++ ++AsnAsnGlnGluAsnPro
171887 : AAGACCTGCAGgt.........................agAACAACCAGGAGAACCCG : 171775
507 : SerHisGlnLysLeuAlaGlyLeuHisLeuGluLysTyrSerPheProValGluMetM : 526
||||||:!!|||||||||! !|||||||||||||||||||||||||||||||||||||
SerHisLysLysLeuAlaAspLeuHisLeuGluLysTyrSerPheProValGluMetM
171774 : TCCCACAAGAAGCTAGCTGACCTGCACCTGGAGAAGTACAGCTTCCCCGTGGAGATGA : 171715
527 : etIleCysLeuProAsnGlyThrVal >>>> Target Intron 10 >>>> Va : 535
|||||||||||||||||||||||||| 1288 bp ||
etIleCysLeuProAsnGlyThrVal++ ++Va
171714 : TGATTTGTCTGCCCAACGGCACTGTGgt..........................agGT : 170400
536 : lHisHisIleAsnAlaAsnTyrPheLeuAspIleThrSerValLysProGluGluIle : 554
||||||||||||||||||||||||||||||||||||||||:!!|||||||||!!:|||
lHisHisIleAsnAlaAsnTyrPheLeuAspIleThrSerMetLysProGluAspIle
170399 : CCACCACATCAACGCCAACTACTTCTTGGATATCACCTCCATGAAGCCCGAGGATATT : 170343
555 : GluSerAsnLeuPheSerPheSerSerThrPheGluAspProSerThrAlaThrTyrM : 574
|||!:!|||:!!||||||||||||||||||||||||||||||||||||||||||||||
GluAsnAsnValPheSerPheSerSerThrPheGluAspProSerThrAlaThrTyrM
170342 : GAGAACAACGTCTTCAGCTTCTCGTCCACCTTTGAAGACCCGTCCACGGCCACGTATA : 170283
575 : etGlnPheLeuLysGluGlyLeuArgArgGlyLeuProLeuLeuGlnPro : 590
||||||||||||||||||||||||||||||||||||||||||||||||||
etGlnPheLeuLysGluGlyLeuArgArgGlyLeuProLeuLeuGlnPro
170282 : TGCAGTTCCTGAAGGAGGGCCTTCGGCGTGGCCTGCCCCTCCTCCAGCCC : 170233
vulgar: SPP00000079_2.0 59 590 . gi|472267212|gb|KB717445.1| 182794 170232 - 2256 M 43 129 S 0 2 5 0 2 I 0 2835 3 0 2 S 1 1 M 42 126 G 0 3 M 34 102 5 0 2 I 0 2611 3 0 2 M 36 108 G 0 3 M 34 102 5 0 2 I 0 186 3 0 2 M 41 123 S 0 2 5 0 2 I 0 536 3 0 2 S 1 1 M 45 135 S 0 2 5 0 2 I 0 1594 3 0 2 S 1 1 M 27 81 5 0 2 I 0 368 3 0 2 M 63 189 5 0 2 I 0 355 3 0 2 M 35 105 S 0 1 5 0 2 I 0 1072 3 0 2 S 1 2 M 37 111 5 0 2 I 0 82 3 0 2 M 34 102 5 0 2 I 0 1284 3 0 2 M 56 168
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local gene 170233 182794 2256 - . gene_id 1 ; sequence SPP00000079_2.0 ; gene_orientation +
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 182664 182794 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 182664 182794 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 182662 182663 . - . intron_id 1 ; splice_site "GA"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 179825 182663 . - . intron_id 1
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 179825 179826 . - . intron_id 0 ; splice_site "AC"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 179593 179824 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 179593 179824 . - . insertions 3 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 179591 179592 . - . intron_id 2 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 176978 179592 . - . intron_id 2
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 176978 176979 . - . intron_id 1 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 176765 176977 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 176765 176977 . - . insertions 3 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 176763 176764 . - . intron_id 3 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 176575 176764 . - . intron_id 3
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 176575 176576 . - . intron_id 2 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 176450 176574 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 176450 176574 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 176448 176449 . - . intron_id 4 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 175910 176449 . - . intron_id 4
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 175910 175911 . - . intron_id 3 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 175772 175909 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 175772 175909 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 175770 175771 . - . intron_id 5 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 174174 175771 . - . intron_id 5
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 174174 174175 . - . intron_id 4 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 174092 174173 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 174092 174173 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 174090 174091 . - . intron_id 6 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 173720 174091 . - . intron_id 6
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 173720 173721 . - . intron_id 5 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 173531 173719 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 173531 173719 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 173529 173530 . - . intron_id 7 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 173172 173530 . - . intron_id 7
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 173172 173173 . - . intron_id 6 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 173066 173171 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 173066 173171 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 173064 173065 . - . intron_id 8 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 171990 173065 . - . intron_id 8
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 171990 171991 . - . intron_id 7 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 171877 171989 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 171877 171989 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 171875 171876 . - . intron_id 9 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 171791 171876 . - . intron_id 9
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 171791 171792 . - . intron_id 8 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 171689 171790 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 171689 171790 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice5 171687 171688 . - . intron_id 10 ; splice_site "GT"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local intron 170401 171688 . - . intron_id 10
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local splice3 170401 170402 . - . intron_id 9 ; splice_site "AG"
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local cds 170233 170400 . - .
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local exon 170233 170400 . - . insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1| exonerate:protein2genome:local similarity 170233 182794 2256 - . alignment_id 1 ; Query SPP00000079_2.0 ; Align 182795 60 129 ; Align 179824 104 126 ; Align 179695 146 102 ; Align 176978 180 108 ; Align 176867 216 102 ; Align 176575 250 123 ; Align 175909 292 135 ; Align 174173 338 81 ; Align 173720 365 189 ; Align 173172 428 105 ; Align 171988 464 111 ; Align 171791 501 102 ; Align 170401 535 168
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis