Command line: [exonerate -m p2g --showtargetgff -q ./SelN.fa -t SelN.carpeta/genomic.fa]
Hostname: [ws101095]

C4 Alignment:
------------
         Query: SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Human (Homo sapiens)
        Target: gi|472267212|gb|KB717445.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02739, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 2256
   Query range: 59 -> 590
  Target range: 182794 -> 170232

     60 : ArgGlnGluLeuAlaLeuLysThrLeuGlyThrAspGlyLeuPheLeuPheSerSerL :     79
          !:!||||||! !|||||||||.!!|||||||||!!:||||||||||||||||||||||
          LysGlnGluSerAlaLeuLysAlaLeuGlyThrGluGlyLeuPheLeuPheSerSerL
 182794 : AAGCAGGAGTCCGCGCTGAAGGCCCTGGGGACGGAAGGCCTCTTTCTCTTTTCCTCCT : 182737

     80 : euAspThrAspGlyAspMetTyrIleSerProGluGluPheLysProIleAlaGluLy :     98
          |||||.!!||| !!||||||||||||||||||||||||||||||||||||||||||||
          euAspAlaAspArgAspMetTyrIleSerProGluGluPheLysProIleAlaGluLy
 182736 : TGGACGCCGACCGGGATATGTACATCAGCCCCGAGGAGTTCAAGCCCATTGCTGAGAA : 182680

     99 : sLeuThrGlySer{Cy}  >>>> Target Intron 1 >>>>  {s}SerValThr :    106
          ||||||||||!!!{ !}           2839 bp           {!}! !  !  !
          sLeuThrGlyThr{Se}+-                         +-{r}PheGlnCys
 182679 : GCTGACAGGTACC{AG}ga.........................ac{C}TTCCAGTGT : 179817

    107 : GlnThrGlyValGlnTrpCysSerHisSerSerLeuGlnProGlnLeuProTrpLeuA :    126
            !  ! !!  !  !|||   |||! !!.!!.!  !   |||  !  !  ! !!! !.
          GlyGlyArgArgGlyTrpThrSerProLysLysArgGlyProAlaAlaGlyGlyGlnG
 179816 : GGGGGGAGAAGGGGGTGGACGTCCCCCAAGAAGAGAGGCCCTGCAGCCGGAGGGCAGG : 179757

    127 : snUnkSerSerCysLeuSerLeuLeuArgSerThrProAlaAlaSerCysGluGluGl :    145
          .!   ||| !!...  !  !! !|||! !.!!:!!  ! !!|||:!! !! ! |||||
          lyArgSerProAlaThrValCysLeuLeuGlySerValProAlaAlaSerTyrGluGl
 179756 : GCCGCTCTCCAGCAACTGTGTGTCTCCTAGGGTCCGTTCCTGCAGCCAGCTATGAGGA : 179700

    146 : u<->GluLeuProProAspProSerGluGluThrLeuThrIleGluAlaArgPheGln :    163
          |   |||||| !!! !||||||||||||||||||||||||||||||||||||||||||
          uAlaGluLeuAlaLeuAspProSerGluGluThrLeuThrIleGluAlaArgPheGln
 179699 : GGCGGAGCTGGCCCTTGACCCCAGTGAGGAGACGCTCACCATAGAAGCCCGATTCCAG : 179643

    164 : ProLeuLeuProGluThrMetThrLysSerLysAspGlyPheLeuGly  >>>> Tar :    180
          ||||||! !||||||:!!||||||||||||||||||||||||||||||          
          ProLeuArgProGluSerMetThrLysSerLysAspGlyPheLeuGly++        
 179642 : CCTCTGCGCCCGGAGTCCATGACCAAGAGCAAAGATGGGTTCCTGGGGgt........ : 179590

    181 : get Intron 2 >>>>  ValSerArgLeuAlaLeuSerGlyLeuArgAsnTrpThr :    192
           2615 bp           |||||||||||||||||||||||||||||||||||||||
                           ++ValSerArgLeuAlaLeuSerGlyLeuArgAsnTrpThr
 179589 : .................agGTCTCCCGCCTGGCCCTATCTGGCCTCCGCAACTGGACG : 176941

    193 : AlaAlaAlaSerProSerAlaValPheAlaThrArgHisPheGlnProPheLeuProP :    212
          .!!|||||||||||||||||||||||||||.!!|||||||||!:!|||||||||||||
          ThrAlaAlaSerProSerAlaValPheAlaAlaArgHisPheArgProPheLeuProP
 176940 : ACGGCAGCCTCGCCAAGTGCGGTATTCGCCGCCCGCCACTTCCGGCCCTTCCTTCCTC : 176881

    213 : roProGlyGln<->GluLeuGlyGluProTrpTrpIleIleProSerGluLeuSerMe :    230
          ||! !|||!:!   ||||||||||||||||||||||||||||||||||||||||||:!
          roGlnGlyArgValGluLeuGlyGluProTrpTrpIleIleProSerGluLeuSerVa
 176880 : CTCAGGGCCGGGTGGAGCTGGGCGAGCCCTGGTGGATCATCCCCAGTGAGCTGAGCGT : 176824

    231 : tPheThrGlyTyrLeuSerAsnAsnArgPheTyrProProProProLysGlyLysGlu :    249
          :|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lPheThrGlyTyrLeuSerAsnAsnArgPheTyrProProProProLysGlyLysGlu
 176823 : CTTCACCGGCTATCTGTCCAACAACCGCTTCTATCCACCACCGCCCAAGGGCAAAGAG : 176767

    250 :   >>>> Target Intron 3 >>>>  ValIleIleHisArgLeuLeuSerMetPh :    259
                      190 bp           |||||||||||||||||||||||||||||
          ++                         ++ValIleIleHisArgLeuLeuSerMetPh
 176766 : gt.........................agGTCATCATCCACCGGCTCCTGAGCATGTT : 176547

    260 : eHisProArgProPheValLysThrArgPheAlaProGlnGlyAlaValAlaCysLeu :    278
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          eHisProArgProPheValLysThrArgPheAlaProGlnGlyAlaValAlaCysLeu
 176546 : CCACCCTCGGCCCTTCGTGAAGACCCGCTTTGCCCCTCAGGGGGCTGTCGCCTGCCTG : 176490

    279 : ThrAlaIleSerAspPheTyrTyrThrValMetPhe{Ar}  >>>> Target Intr :    291
          ||||||||||||||||||||||||||||||||||||{||}            540 bp
          ThrAlaIleSerAspPheTyrTyrThrValMetPhe{Ar}++                
 176489 : ACGGCCATCAGCGACTTCTACTACACTGTGATGTTC{CG}gt................ : 176447

    292 : on 4 >>>>  {g}IleHisAlaGluPheGlnLeuSerGluProProAspPheProPh :    306
                     {|}||||||||||||||||||||||||||||||||||||||||||||
                   ++{g}IleHisAlaGluPheGlnLeuSerGluProProAspPheProPh
 176446 : .........ag{G}ATCCACGCCGAGTTCCAGCTCAGCGAGCCGCCTGACTTCCCCTT : 175866

    307 : eTrpPheSerProAlaGlnPheThrGlyHisIleIleLeuSerLysAspAlaThrHis :    325
          |||||||||||||!.!||||||||||||||||||||||||||||||||||||||||||
          eTrpPheSerProGlyGlnPheThrGlyHisIleIleLeuSerLysAspAlaThrHis
 175865 : CTGGTTCTCACCTGGCCAGTTCACCGGCCACATCATCCTCTCCAAAGACGCCACTCAT : 175809

    326 : ValArgAspPheArgLeuPheValProAsnHis{Ar}  >>>> Target Intron  :    337
          :!!||||||||||||||||||||||||||||||{||}           1598 bp   
          IleArgAspPheArgLeuPheValProAsnHis{Ar}++                   
 175808 : ATCCGAGATTTCCGGCTCTTCGTGCCCAACCAC{AG}gt................... : 175769

    338 : 5 >>>>  {g}SerLeuAsnValAspMetGluTrpLeuTyrGlyAlaSerGluSerSe :    353
                  {|}||||||||||||||||||||||||||||||||||||.!!||||||||
                ++{g}SerLeuAsnValAspMetGluTrpLeuTyrGlyAlaGlyGluSerSe
 175768 : ......ag{G}TCTCTGAACGTGGACATGGAGTGGCTGTACGGGGCCGGTGAGAGCAG : 174127

    354 : rAsnMetGluValAspIleGlyTyrIleProGln  >>>> Target Intron 6 > :    365
          ||||||||||||||||||||||||||||||||||            372 bp      
          rAsnMetGluValAspIleGlyTyrIleProGln++                      
 174126 : CAACATGGAGGTGGACATTGGCTACATCCCCCAGgt...................... : 174089

    366 : >>>  MetGluLeuGluAlaThrGlyProSerValProSerValIleLeuAspGluAs :    382
               |||||||||||||||  !||||||||||||||||||:!!||||||||||||||
             ++MetGluLeuGluAlaLeuGlyProSerValProSerMetIleLeuAspGluAs
 174088 : ...agATGGAGCTGGAGGCCCTGGGCCCATCAGTCCCCTCCATGATCCTGGATGAGGA : 173668

    383 : pGlySerMetIleAspSerHisLeuProSerGlyGluProLeuGlnPheValPheGlu :    401
          ||||!:!|||||||||||||||! !|||||||||||||||||||||||||||||||||
          pGlyAsnMetIleAspSerHisProProSerGlyGluProLeuGlnPheValPheGlu
 173667 : TGGCAACATGATCGACAGCCACCCGCCCTCAGGGGAGCCCCTCCAGTTTGTGTTTGAG : 173611

    402 : GluIleLysTrpGlnGlnGluLeuSerTrpGluGluAlaAlaArgArgLeuGluValA :    421
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluIleLysTrpGlnGlnGluLeuSerTrpGluGluAlaAlaArgArgLeuGluValA
 173610 : GAGATCAAGTGGCAGCAGGAGCTGAGCTGGGAGGAGGCCGCGCGGCGCCTGGAGGTGG : 173551

    422 : laMetTyrProPheLysLys  >>>> Target Intron 7 >>>>  ValSerTyr :    430
          ||||||||||||||||||||            359 bp           |||!!!|||
          laMetTyrProPheLysLys++                         ++ValThrTyr
 173550 : CCATGTACCCCTTCAAGAAGgt.........................agGTCACCTAT : 173165

    431 : LeuProPheThrGluAlaPheAspArgAlaLysAlaGluAsnLysLeuValHisSerI :    450
          |||||||||! !||||||||||||!.!|||||||||:!!|||||||||||||||||||
          LeuProPheIleGluAlaPheAspHisAlaLysAlaLysAsnLysLeuValHisSerI
 173164 : CTGCCATTCATCGAGGCCTTCGACCACGCCAAGGCCAAGAACAAGCTGGTGCACTCAA : 173105

    451 : leLeuLeuTrpGlyAlaLeuAspAspGlnSerCysUnk{G}  >>>> Target Int :    463
          |||||||||||||||||||||||||||||||||||   {|}           1076 b
          leLeuLeuTrpGlyAlaLeuAspAspGlnSerCys***{G}++               
 173104 : TTCTGCTGTGGGGGGCCCTGGATGACCAGTCCTGCTGA{G}gt............... : 173063

    464 : ron 8 >>>>  {ly}SerGlyArgThrLeuArgGluThrValLeuGluSerSerPro :    477
          p           {||}||||||||||||||||||||||||||||||||||||||||||
                    ++{ly}SerGlyArgThrLeuArgGluThrValLeuGluSerSerPro
 173062 : ..........ag{GT}TCGGGGCGGACTCTCCGGGAGACTGTCCTGGAAAGTTCGCCC : 171948

    478 : IleLeuThrLeuLeuAsnGluSerPheIleSerThrTrpSerLeuValLysGluLeuG :    497
          |||:!!.!!|||||||||||||||||||||||||||||||||||||||!:!|||||||
          IleIleAlaLeuLeuAsnGluSerPheIleSerThrTrpSerLeuValArgGluLeuG
 171947 : ATCATCGCCCTCCTCAACGAGAGCTTCATCAGCACTTGGTCCCTGGTGAGGGAGCTGG : 171888

    498 : luGluLeuGln  >>>> Target Intron 9 >>>>  AsnAsnGlnGluAsnSer :    506
          ||!!:||||||            86 bp            ||||||||||||||| !!
          luAspLeuGln++                         ++AsnAsnGlnGluAsnPro
 171887 : AAGACCTGCAGgt.........................agAACAACCAGGAGAACCCG : 171775

    507 : SerHisGlnLysLeuAlaGlyLeuHisLeuGluLysTyrSerPheProValGluMetM :    526
          ||||||:!!|||||||||! !|||||||||||||||||||||||||||||||||||||
          SerHisLysLysLeuAlaAspLeuHisLeuGluLysTyrSerPheProValGluMetM
 171774 : TCCCACAAGAAGCTAGCTGACCTGCACCTGGAGAAGTACAGCTTCCCCGTGGAGATGA : 171715

    527 : etIleCysLeuProAsnGlyThrVal  >>>> Target Intron 10 >>>>  Va :    535
          ||||||||||||||||||||||||||            1288 bp           ||
          etIleCysLeuProAsnGlyThrVal++                          ++Va
 171714 : TGATTTGTCTGCCCAACGGCACTGTGgt..........................agGT : 170400

    536 : lHisHisIleAsnAlaAsnTyrPheLeuAspIleThrSerValLysProGluGluIle :    554
          ||||||||||||||||||||||||||||||||||||||||:!!|||||||||!!:|||
          lHisHisIleAsnAlaAsnTyrPheLeuAspIleThrSerMetLysProGluAspIle
 170399 : CCACCACATCAACGCCAACTACTTCTTGGATATCACCTCCATGAAGCCCGAGGATATT : 170343

    555 : GluSerAsnLeuPheSerPheSerSerThrPheGluAspProSerThrAlaThrTyrM :    574
          |||!:!|||:!!||||||||||||||||||||||||||||||||||||||||||||||
          GluAsnAsnValPheSerPheSerSerThrPheGluAspProSerThrAlaThrTyrM
 170342 : GAGAACAACGTCTTCAGCTTCTCGTCCACCTTTGAAGACCCGTCCACGGCCACGTATA : 170283

    575 : etGlnPheLeuLysGluGlyLeuArgArgGlyLeuProLeuLeuGlnPro :    590
          ||||||||||||||||||||||||||||||||||||||||||||||||||
          etGlnPheLeuLysGluGlyLeuArgArgGlyLeuProLeuLeuGlnPro
 170282 : TGCAGTTCCTGAAGGAGGGCCTTCGGCGTGGCCTGCCCCTCCTCCAGCCC : 170233

vulgar: SPP00000079_2.0 59 590 . gi|472267212|gb|KB717445.1| 182794 170232 - 2256 M 43 129 S 0 2 5 0 2 I 0 2835 3 0 2 S 1 1 M 42 126 G 0 3 M 34 102 5 0 2 I 0 2611 3 0 2 M 36 108 G 0 3 M 34 102 5 0 2 I 0 186 3 0 2 M 41 123 S 0 2 5 0 2 I 0 536 3 0 2 S 1 1 M 45 135 S 0 2 5 0 2 I 0 1594 3 0 2 S 1 1 M 27 81 5 0 2 I 0 368 3 0 2 M 63 189 5 0 2 I 0 355 3 0 2 M 35 105 S 0 1 5 0 2 I 0 1072 3 0 2 S 1 2 M 37 111 5 0 2 I 0 82 3 0 2 M 34 102 5 0 2 I 0 1284 3 0 2 M 56 168
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	gene	170233	182794	2256	-	.	gene_id 1 ; sequence SPP00000079_2.0 ; gene_orientation +
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	182664	182794	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	182664	182794	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	182662	182663	.	-	.	intron_id 1 ; splice_site "GA"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	179825	182663	.	-	.	intron_id 1
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	179825	179826	.	-	.	intron_id 0 ; splice_site "AC"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	179593	179824	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	179593	179824	.	-	.	insertions 3 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	179591	179592	.	-	.	intron_id 2 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	176978	179592	.	-	.	intron_id 2
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	176978	176979	.	-	.	intron_id 1 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	176765	176977	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	176765	176977	.	-	.	insertions 3 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	176763	176764	.	-	.	intron_id 3 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	176575	176764	.	-	.	intron_id 3
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	176575	176576	.	-	.	intron_id 2 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	176450	176574	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	176450	176574	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	176448	176449	.	-	.	intron_id 4 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	175910	176449	.	-	.	intron_id 4
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	175910	175911	.	-	.	intron_id 3 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	175772	175909	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	175772	175909	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	175770	175771	.	-	.	intron_id 5 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	174174	175771	.	-	.	intron_id 5
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	174174	174175	.	-	.	intron_id 4 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	174092	174173	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	174092	174173	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	174090	174091	.	-	.	intron_id 6 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	173720	174091	.	-	.	intron_id 6
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	173720	173721	.	-	.	intron_id 5 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	173531	173719	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	173531	173719	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	173529	173530	.	-	.	intron_id 7 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	173172	173530	.	-	.	intron_id 7
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	173172	173173	.	-	.	intron_id 6 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	173066	173171	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	173066	173171	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	173064	173065	.	-	.	intron_id 8 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	171990	173065	.	-	.	intron_id 8
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	171990	171991	.	-	.	intron_id 7 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	171877	171989	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	171877	171989	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	171875	171876	.	-	.	intron_id 9 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	171791	171876	.	-	.	intron_id 9
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	171791	171792	.	-	.	intron_id 8 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	171689	171790	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	171689	171790	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice5	171687	171688	.	-	.	intron_id 10 ; splice_site "GT"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	intron	170401	171688	.	-	.	intron_id 10
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	splice3	170401	170402	.	-	.	intron_id 9 ; splice_site "AG"
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	cds	170233	170400	.	-	.	
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	exon	170233	170400	.	-	.	insertions 0 ; deletions 0
gi|472267212|gb|KB717445.1|	exonerate:protein2genome:local	similarity	170233	182794	2256	-	.	alignment_id 1 ; Query SPP00000079_2.0 ; Align 182795 60 129 ; Align 179824 104 126 ; Align 179695 146 102 ; Align 176978 180 108 ; Align 176867 216 102 ; Align 176575 250 123 ; Align 175909 292 135 ; Align 174173 338 81 ; Align 173720 365 189 ; Align 173172 428 105 ; Align 171988 464 111 ; Align 171791 501 102 ; Align 170401 535 168
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis