TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Human (Homo sapiens) (590 letters) Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno me.fa 16,710 sequences; 3,156,886,159 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|472267212|gb|KB717445.1| Leptonychotes weddellii isolate WS11... 139 7e-31 gi|472265724|gb|KB718933.1| Leptonychotes weddellii isolate WS11... 36 6.7 >gi|472267212|gb|KB717445.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02739, whole genome shotgun sequence Length = 322709 Score = 139 bits (349), Expect = 7e-31 Identities = 65/72 (90%), Positives = 68/72 (94%), Gaps = 1/72 (1%) Frame = -2 Query: 180 VSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQ-ELGEPWWIIPSELSMFTGYLSNN 238 VSRLALSGLRNWT AASPSAVFA RHF+PFLPP G+ ELGEPWWIIPSELS+FTGYLSNN Sbjct: 176977 VSRLALSGLRNWTTAASPSAVFAARHFRPFLPPQGRVELGEPWWIIPSELSVFTGYLSNN 176798 Query: 239 RFYPPPPKGKEV 250 RFYPPPPKGKEV Sbjct: 176797 RFYPPPPKGKEV 176762 Score = 127 bits (319), Expect = 2e-27 Identities = 61/67 (91%), Positives = 64/67 (95%) Frame = -2 Query: 362 IPQMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEVA 421 + QMELEA GPSVPS+ILDEDG+MIDSH PSGEPLQFVFEEIKWQQELSWEEAARRLEVA Sbjct: 173728 LAQMELEALGPSVPSMILDEDGNMIDSHPPSGEPLQFVFEEIKWQQELSWEEAARRLEVA 173549 Query: 422 MYPFKKV 428 MYPFKKV Sbjct: 173548 MYPFKKV 173528 Score = 111 bits (278), Expect = 1e-22 Identities = 52/56 (92%), Positives = 56/56 (100%) Frame = -3 Query: 535 VHHINANYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP 590 VHHINANYFLDITS+KPE+IE+N+FSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP Sbjct: 170400 VHHINANYFLDITSMKPEDIENNVFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP 170233 Score = 103 bits (256), Expect = 4e-20 Identities = 45/47 (95%), Positives = 46/47 (97%) Frame = -3 Query: 291 RIHAEFQLSEPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHR 337 RIHAEFQLSEPPDFPFWFSP QFTGHIILSKDATH+RDFRLFVPNHR Sbjct: 175911 RIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHIRDFRLFVPNHR 175771 Score = 94.4 bits (233), Expect = 2e-17 Identities = 51/74 (68%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = -3 Query: 243 PPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRI----HAEFQL 298 P P +VIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFR H + L Sbjct: 176595 PLPAPSQVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRCVVLRHPPWPL 176416 Query: 299 SEPPD-FPFWFSPA 311 S D W PA Sbjct: 176415 SRAGDPREAWKGPA 176374 Score = 73.2 bits (178), Expect = 5e-11 Identities = 34/46 (73%), Positives = 38/46 (82%) Frame = -1 Query: 424 PFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSCXGSGRTLR 469 P+ +V+YLPF EAFD AKA+NKLVHSILLWGALDDQSC G G R Sbjct: 173183 PWPQVTYLPFIEAFDHAKAKNKLVHSILLWGALDDQSC*GEGDPAR 173046 Score = 68.2 bits (165), Expect = 2e-09 Identities = 32/37 (86%), Positives = 34/37 (91%) Frame = -2 Query: 66 KTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGS 102 K LGT+GLFLFSSLD D DMYISPEEFKPIAEKLTG+ Sbjct: 182776 KALGTEGLFLFSSLDADRDMYISPEEFKPIAEKLTGT 182666 Score = 62.0 bits (149), Expect = 1e-07 Identities = 29/42 (69%), Positives = 32/42 (76%) Frame = -2 Query: 333 VPNHRSLNVDMEWLYGASESSNMEVDIGYIPQMELEATGPSV 374 +P RSLNVDMEWLYGA ESSNMEVDIGYIPQ+ + V Sbjct: 174187 LPVTRSLNVDMEWLYGAGESSNMEVDIGYIPQVSTQGVPTQV 174062 Score = 60.8 bits (146), Expect = 3e-07 Identities = 29/32 (90%), Positives = 31/32 (96%) Frame = -3 Query: 463 GSGRTLRETVLESSPILTLLNESFISTWSLVK 494 GSGRTLRETVLESSPI+ LLNESFISTWSLV+ Sbjct: 171990 GSGRTLRETVLESSPIIALLNESFISTWSLVR 171895 Score = 59.7 bits (143), Expect = 6e-07 Identities = 27/29 (93%), Positives = 28/29 (96%) Frame = -2 Query: 507 SHQKLAGLHLEKYSFPVEMMICLPNGTVV 535 SH+KLA LHLEKYSFPVEMMICLPNGTVV Sbjct: 171772 SHKKLADLHLEKYSFPVEMMICLPNGTVV 171686 Score = 55.1 bits (131), Expect = 1e-05 Identities = 39/83 (46%), Positives = 43/83 (51%), Gaps = 9/83 (10%) Frame = -3 Query: 138 PAASCXXXXXXXXXXXXTLTIEARFQPLLPETMTKSKDGFLGVS------RLALSGLRNW 191 PAAS TLTIEARFQPL PE+MTKSKDGFLGVS RL G + Sbjct: 179718 PAASYEEAELALDPSEETLTIEARFQPLRPESMTKSKDGFLGVSLSGGQWRLPPGGTTDT 179539 Query: 192 TAAASPSA---VFATRHFQPFLP 211 ++A V A F FLP Sbjct: 179538 GSSAHTDP*E*VCALFRFPSFLP 179470 >gi|472265724|gb|KB718933.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold04227, whole genome shotgun sequence Length = 169827 Score = 36.2 bits (82), Expect = 6.7 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Frame = +1 Query: 208 PFLPPPGQELGEPWWIIPSELSM-FTGYLS---NNRFYPPPPKGKEVIIHRLL-SMFHPR 262 P PPP ++G WW + S L F G S +++ PPPP G + H LL S+ Sbjct: 15328 PQCPPPQNQMGRVWWSLTSFLQFNFMGKTSLSCSHQQPPPPPIGVVITSHSLLFSLISAL 15507 Query: 263 PFVKTR 268 KT+ Sbjct: 15508 EMAKTK 15525 Score = 36.2 bits (82), Expect = 6.7 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Frame = +2 Query: 208 PFLPPPGQELGEPWWIIPSELSM-FTGYLS---NNRFYPPPPKGKEVIIHRLL-SMFHPR 262 P PPP ++G WW + S L F G S +++ PPPP G + H LL S+ Sbjct: 32480 PQCPPPQNQMGRVWWSLTSFLQFNFMGKTSLSCSHQQPPPPPIGVVITSHSLLFSLISAL 32659 Query: 263 PFVKTR 268 KT+ Sbjct: 32660 EMAKTK 32677 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 3,087,506,849 Number of sequences in database: 5788 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa.01 Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 69,379,310 Number of sequences in database: 10,922 Lambda K H 0.320 0.135 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,105,649,044 Number of Sequences: 16710 Number of extensions: 36440403 Number of successful extensions: 148481 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 700 Number of HSP's successfully gapped in prelim test: 734 Number of HSP's that attempted gapping in prelim test: 136543 Number of HSP's gapped (non-prelim): 36273 length of query: 590 length of database: 1,052,295,386 effective HSP length: 138 effective length of query: 452 effective length of database: 1,049,989,406 effective search space: 474595211512 effective search space used: 474595211512 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 81 (35.8 bits)