Command line: [exonerate -m p2g --showtargetgff -q ./SelM.fa -t SelM.carpeta/genomic.fa]
Hostname: [ws101075]

C4 Alignment:
------------
         Query: SPP00000077_2.0 # Protein # Selenoprotein M (SelM) # Human (Homo sapiens)
        Target: gi|472269525|gb|KB715164.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00458, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 530
   Query range: 0 -> 145
  Target range: 750158 -> 752570

      1 : MetSerLeuLeuLeuProProLeuAlaLeuLeuLeuLeuLeuAlaAlaLeuValAlaP :     20
          |||  !|||! !|||||||||! ! !!||||||||||||||||||||||||       
          MetHisLeuProLeuProProProProLeuLeuLeuLeuLeuAlaAlaLeu-------
 750159 : ATGCACCTCCCGCTGCCTCCACCGCCCCTGCTGCTGCTTCTCGCGGCACTC------- : 750210

     21 : roAlaThrAlaAlaThrAlaTyrArgProAspTrpAsnArgLeuSerGlyLeuThrAr :     39
            |||.!!|||!.!|||.!!!:!|||||||||||||||||||||  !||||||.!!||
          --AlaAlaAlaValThrThrPheArgProAspTrpAsnArgLeuHisGlyLeuAlaAr
 750211 : --GCGGCCGCCGTCACTACCTTCCGGCCCGACTGGAACCGTCTGCACGGCCTGGCCCG : 750264

     40 : gAlaArgValGlu  >>>> Target Intron 1 >>>>  ThrCysGlyGlyUnkG :     49
          |||||||||||||           1151 bp           ||||||||||||   |
          gAlaArgValGlu++                         ++ThrCysGlyGly***G
 750265 : AGCCCGGGTAGAGgt.........................agACCTGTGGGGGATGAC : 751445

     50 : lnLeuAsnArgLeuLysGlu  >>>> Target Intron 2 >>>>  ValLysAla :     58
          ||||||||||||||||||||            400 bp           |||||||||
          lnLeuAsnArgLeuLysGlu++                         ++ValLysAla
 751446 : AGCTGAATCGCCTGAAGGAGgt.........................agGTGAAGGCC : 751872

     59 : PheValThrGlnAspIleProPhe{Ty}  >>>> Target Intron 3 >>>>  { :     67
          |||||||||||||||||||||!!.{||}            353 bp           {
          PheValThrGlnAspIleProLeu{Ty}++                         ++{
 751873 : TTTGTCACCCAGGACATCCCTTTA{TA}gt.........................ag{ : 752254

     68 : r}HisAsnLeuValMetLysHisLeuProGlyAlaAspProGluLeuValLeuLeuGl :     86
          |}||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          r}HisAsnLeuValMetLysHisLeuProGlyAlaAspProGluLeuValLeuLeuGl
 752255 : T}CACAACCTGGTAATGAAACACCTTCCAGGGGCCGACCCAGAGCTCGTCCTGCTGGG : 752309

     87 : yArgArgTyrGluGluLeuGlu  >>>> Target Intron 4 >>>>  ArgIleP :     96
          |!.!||||||||||||||||||            82 bp            |||||||
          yHisArgTyrGluGluLeuGlu++                         ++ArgIleP
 752310 : CCACCGCTACGAAGAACTGGAGgt.........................agCGAATCC : 752421

     97 : roLeuSerGluMetThrArgGluGluIleAsnAlaLeuValGlnGluLeuGlyPheTy :    115
          ||||||||||||||||||||||||||||||||! !|||||||||||||||||||||||
          roLeuSerGluMetThrArgGluGluIleAsnGluLeuValGlnGluLeuGlyPheTy
 752422 : CACTCAGCGAAATGACCCGCGAGGAGATCAATGAGCTGGTGCAGGAGCTCGGCTTCTA : 752478

    116 : rArgLysAlaAlaProAspAlaGlnValProProGluTyrValTrpAlaProAlaLys :    134
          |||||||||||||||||||! !!  |||||||||||||||:!! !!||||||||||||
          rArgLysAlaAlaProAspGluProValProProGluTyrLeuArgAlaProAlaLys
 752479 : CCGCAAGGCGGCGCCCGACGAACCTGTTCCCCCTGAGTACCTACGGGCGCCTGCCAAG : 752535

    135 : ProProGluGluThrSerAspHisAlaAspLeu :    145
          ||| !!|||!  .!! !!|||!.! !!||||||
          ProAlaGluGlyAlaProAspArgProAspLeu
 752536 : CCCGCCGAAGGCGCTCCGGACCGCCCTGACCTT : 752570

vulgar: SPP00000077_2.0 0 145 . gi|472269525|gb|KB715164.1| 750158 752570 + 530 M 17 51 G 3 0 M 23 69 5 0 2 I 0 1147 3 0 2 M 12 36 5 0 2 I 0 396 3 0 2 M 11 33 S 0 2 5 0 2 I 0 349 3 0 2 S 1 1 M 26 78 5 0 2 I 0 78 3 0 2 M 52 156
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-13
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	gene	750159	752570	530	+	.	gene_id 1 ; sequence SPP00000077_2.0 ; gene_orientation +
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	cds	750159	750278	.	+	.	
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	exon	750159	750278	.	+	.	insertions 0 ; deletions 3
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	splice5	750279	750280	.	+	.	intron_id 1 ; splice_site "GT"
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	intron	750279	751429	.	+	.	intron_id 1
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	splice3	751428	751429	.	+	.	intron_id 0 ; splice_site "AG"
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	cds	751430	751465	.	+	.	
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	exon	751430	751465	.	+	.	insertions 0 ; deletions 0
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	splice5	751466	751467	.	+	.	intron_id 2 ; splice_site "GT"
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	intron	751466	751865	.	+	.	intron_id 2
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	splice3	751864	751865	.	+	.	intron_id 1 ; splice_site "AG"
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	cds	751866	751900	.	+	.	
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	exon	751866	751900	.	+	.	insertions 0 ; deletions 0
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	splice5	751901	751902	.	+	.	intron_id 3 ; splice_site "GT"
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	intron	751901	752253	.	+	.	intron_id 3
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	splice3	752252	752253	.	+	.	intron_id 2 ; splice_site "AG"
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	cds	752254	752332	.	+	.	
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	exon	752254	752332	.	+	.	insertions 0 ; deletions 0
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	splice5	752333	752334	.	+	.	intron_id 4 ; splice_site "GT"
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	intron	752333	752414	.	+	.	intron_id 4
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	splice3	752413	752414	.	+	.	intron_id 3 ; splice_site "AG"
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	cds	752415	752570	.	+	.	
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	exon	752415	752570	.	+	.	insertions 0 ; deletions 0
gi|472269525|gb|KB715164.1|	exonerate:protein2genome:local	similarity	750159	752570	530	+	.	alignment_id 1 ; Query SPP00000077_2.0 ; Align 750159 1 51 ; Align 750210 21 69 ; Align 751430 44 36 ; Align 751866 56 33 ; Align 752255 68 78 ; Align 752415 94 156
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis