Command line: [exonerate -m p2g --showtargetgff -q ./SelM.fa -t SelM.carpeta/genomic.fa] Hostname: [ws101075] C4 Alignment: ------------ Query: SPP00000077_2.0 # Protein # Selenoprotein M (SelM) # Human (Homo sapiens) Target: gi|472269525|gb|KB715164.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00458, whole genome shotgun sequence Model: protein2genome:local Raw score: 530 Query range: 0 -> 145 Target range: 750158 -> 752570 1 : MetSerLeuLeuLeuProProLeuAlaLeuLeuLeuLeuLeuAlaAlaLeuValAlaP : 20 ||| !|||! !|||||||||! ! !!|||||||||||||||||||||||| MetHisLeuProLeuProProProProLeuLeuLeuLeuLeuAlaAlaLeu------- 750159 : ATGCACCTCCCGCTGCCTCCACCGCCCCTGCTGCTGCTTCTCGCGGCACTC------- : 750210 21 : roAlaThrAlaAlaThrAlaTyrArgProAspTrpAsnArgLeuSerGlyLeuThrAr : 39 |||.!!|||!.!|||.!!!:!||||||||||||||||||||| !||||||.!!|| --AlaAlaAlaValThrThrPheArgProAspTrpAsnArgLeuHisGlyLeuAlaAr 750211 : --GCGGCCGCCGTCACTACCTTCCGGCCCGACTGGAACCGTCTGCACGGCCTGGCCCG : 750264 40 : gAlaArgValGlu >>>> Target Intron 1 >>>> ThrCysGlyGlyUnkG : 49 ||||||||||||| 1151 bp |||||||||||| | gAlaArgValGlu++ ++ThrCysGlyGly***G 750265 : AGCCCGGGTAGAGgt.........................agACCTGTGGGGGATGAC : 751445 50 : lnLeuAsnArgLeuLysGlu >>>> Target Intron 2 >>>> ValLysAla : 58 |||||||||||||||||||| 400 bp ||||||||| lnLeuAsnArgLeuLysGlu++ ++ValLysAla 751446 : AGCTGAATCGCCTGAAGGAGgt.........................agGTGAAGGCC : 751872 59 : PheValThrGlnAspIleProPhe{Ty} >>>> Target Intron 3 >>>> { : 67 |||||||||||||||||||||!!.{||} 353 bp { PheValThrGlnAspIleProLeu{Ty}++ ++{ 751873 : TTTGTCACCCAGGACATCCCTTTA{TA}gt.........................ag{ : 752254 68 : r}HisAsnLeuValMetLysHisLeuProGlyAlaAspProGluLeuValLeuLeuGl : 86 |}|||||||||||||||||||||||||||||||||||||||||||||||||||||||| r}HisAsnLeuValMetLysHisLeuProGlyAlaAspProGluLeuValLeuLeuGl 752255 : T}CACAACCTGGTAATGAAACACCTTCCAGGGGCCGACCCAGAGCTCGTCCTGCTGGG : 752309 87 : yArgArgTyrGluGluLeuGlu >>>> Target Intron 4 >>>> ArgIleP : 96 |!.!|||||||||||||||||| 82 bp ||||||| yHisArgTyrGluGluLeuGlu++ ++ArgIleP 752310 : CCACCGCTACGAAGAACTGGAGgt.........................agCGAATCC : 752421 97 : roLeuSerGluMetThrArgGluGluIleAsnAlaLeuValGlnGluLeuGlyPheTy : 115 ||||||||||||||||||||||||||||||||! !||||||||||||||||||||||| roLeuSerGluMetThrArgGluGluIleAsnGluLeuValGlnGluLeuGlyPheTy 752422 : CACTCAGCGAAATGACCCGCGAGGAGATCAATGAGCTGGTGCAGGAGCTCGGCTTCTA : 752478 116 : rArgLysAlaAlaProAspAlaGlnValProProGluTyrValTrpAlaProAlaLys : 134 |||||||||||||||||||! !! |||||||||||||||:!! !!|||||||||||| rArgLysAlaAlaProAspGluProValProProGluTyrLeuArgAlaProAlaLys 752479 : CCGCAAGGCGGCGCCCGACGAACCTGTTCCCCCTGAGTACCTACGGGCGCCTGCCAAG : 752535 135 : ProProGluGluThrSerAspHisAlaAspLeu : 145 ||| !!|||! .!! !!|||!.! !!|||||| ProAlaGluGlyAlaProAspArgProAspLeu 752536 : CCCGCCGAAGGCGCTCCGGACCGCCCTGACCTT : 752570 vulgar: SPP00000077_2.0 0 145 . gi|472269525|gb|KB715164.1| 750158 752570 + 530 M 17 51 G 3 0 M 23 69 5 0 2 I 0 1147 3 0 2 M 12 36 5 0 2 I 0 396 3 0 2 M 11 33 S 0 2 5 0 2 I 0 349 3 0 2 S 1 1 M 26 78 5 0 2 I 0 78 3 0 2 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2013-11-13 ##type DNA # # # seqname source feature start end score strand frame attributes # gi|472269525|gb|KB715164.1| exonerate:protein2genome:local gene 750159 752570 530 + . gene_id 1 ; sequence SPP00000077_2.0 ; gene_orientation + gi|472269525|gb|KB715164.1| exonerate:protein2genome:local cds 750159 750278 . + . gi|472269525|gb|KB715164.1| exonerate:protein2genome:local exon 750159 750278 . + . insertions 0 ; deletions 3 gi|472269525|gb|KB715164.1| exonerate:protein2genome:local splice5 750279 750280 . + . intron_id 1 ; splice_site "GT" gi|472269525|gb|KB715164.1| exonerate:protein2genome:local intron 750279 751429 . + . intron_id 1 gi|472269525|gb|KB715164.1| exonerate:protein2genome:local splice3 751428 751429 . + . intron_id 0 ; splice_site "AG" gi|472269525|gb|KB715164.1| exonerate:protein2genome:local cds 751430 751465 . + . gi|472269525|gb|KB715164.1| exonerate:protein2genome:local exon 751430 751465 . + . insertions 0 ; deletions 0 gi|472269525|gb|KB715164.1| exonerate:protein2genome:local splice5 751466 751467 . + . intron_id 2 ; splice_site "GT" gi|472269525|gb|KB715164.1| exonerate:protein2genome:local intron 751466 751865 . + . intron_id 2 gi|472269525|gb|KB715164.1| exonerate:protein2genome:local splice3 751864 751865 . + . intron_id 1 ; splice_site "AG" gi|472269525|gb|KB715164.1| exonerate:protein2genome:local cds 751866 751900 . + . gi|472269525|gb|KB715164.1| exonerate:protein2genome:local exon 751866 751900 . + . insertions 0 ; deletions 0 gi|472269525|gb|KB715164.1| exonerate:protein2genome:local splice5 751901 751902 . + . intron_id 3 ; splice_site "GT" gi|472269525|gb|KB715164.1| exonerate:protein2genome:local intron 751901 752253 . + . intron_id 3 gi|472269525|gb|KB715164.1| exonerate:protein2genome:local splice3 752252 752253 . + . intron_id 2 ; splice_site "AG" gi|472269525|gb|KB715164.1| exonerate:protein2genome:local cds 752254 752332 . + . gi|472269525|gb|KB715164.1| exonerate:protein2genome:local exon 752254 752332 . + . insertions 0 ; deletions 0 gi|472269525|gb|KB715164.1| exonerate:protein2genome:local splice5 752333 752334 . + . intron_id 4 ; splice_site "GT" gi|472269525|gb|KB715164.1| exonerate:protein2genome:local intron 752333 752414 . + . intron_id 4 gi|472269525|gb|KB715164.1| exonerate:protein2genome:local splice3 752413 752414 . + . intron_id 3 ; splice_site "AG" gi|472269525|gb|KB715164.1| exonerate:protein2genome:local cds 752415 752570 . + . gi|472269525|gb|KB715164.1| exonerate:protein2genome:local exon 752415 752570 . + . insertions 0 ; deletions 0 gi|472269525|gb|KB715164.1| exonerate:protein2genome:local similarity 750159 752570 530 + . alignment_id 1 ; Query SPP00000077_2.0 ; Align 750159 1 51 ; Align 750210 21 69 ; Align 751430 44 36 ; Align 751866 56 33 ; Align 752255 68 78 ; Align 752415 94 156 # --- END OF GFF DUMP --- # -- completed exonerate analysis