TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000077_2.0 # Protein # Selenoprotein M (SelM) # Human
(Homo sapiens)
         (145 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472269525|gb|KB715164.1| Leptonychotes weddellii isolate WS11...    86   2e-26

>gi|472269525|gb|KB715164.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00458, whole genome
              shotgun sequence
          Length = 1321538

 Score = 85.5 bits (210), Expect(2) = 2e-26
 Identities = 42/54 (77%), Positives = 44/54 (81%)
 Frame = +3

Query: 92     LERIPLSEMTREEINALVQELGFYRKAAPDAQVPPEYVWAPAKPPEETSDHADL 145
              L+RIPLSEMTREEIN LVQELGFYRKAAPD  VPPEY+ APAKP E   D  DL
Sbjct: 752409 LQRIPLSEMTREEINELVQELGFYRKAAPDEPVPPEYLRAPAKPAEGAPDRPDL 752570



 Score = 55.5 bits (132), Expect(2) = 2e-26
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = +2

Query: 68     HNLVMKHLPGADPELVLLGRRYEELE 93
              HNLVMKHLPGADPELVLLG RYEELE
Sbjct: 752255 HNLVMKHLPGADPELVLLGHRYEELE 752332



 Score = 35.0 bits (79), Expect = 0.89
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 27     YRPDWNRLSGLTRARVE 43
              +RPDWNRL GL RARVE
Sbjct: 750228 FRPDWNRLHGLARARVE 750278


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.317    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,119,602
Number of Sequences: 16710
Number of extensions: 5775824
Number of successful extensions: 28268
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 26336
Number of HSP's gapped (non-prelim): 5241
length of query: 145
length of database: 1,052,295,386
effective HSP length: 118
effective length of query: 27
effective length of database: 1,050,323,606
effective search space: 28358737362
effective search space used: 28358737362
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)