TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000076_2.0 # Protein # Selenoprotein K (SelK) # Human
(Homo sapiens)
         (94 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472268922|gb|KB715735.1| Leptonychotes weddellii isolate WS11...    67   2e-10
gi|472269925|gb|KB714764.1| Leptonychotes weddellii isolate WS11...    67   2e-10
gi|472269203|gb|KB715454.1| Leptonychotes weddellii isolate WS11...    45   8e-04
gi|472269642|gb|KB715047.1| Leptonychotes weddellii isolate WS11...    32   9.1  
gi|472269975|gb|KB714714.1| Leptonychotes weddellii isolate WS11...    32   9.1  

>gi|472268922|gb|KB715735.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold01029, whole genome
              shotgun sequence
          Length = 796965

 Score = 67.4 bits (163), Expect = 2e-10
 Identities = 31/34 (91%), Positives = 33/34 (97%)
 Frame = +2

Query: 3      YISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVL 36
              ++S GQVLDSRSQSPWRLSLITDFFWGIAEFVVL
Sbjct: 289856 FLSVGQVLDSRSQSPWRLSLITDFFWGIAEFVVL 289957



 Score = 52.8 bits (125), Expect = 4e-06
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = +1

Query: 38     FKTLLQQDVKKRRSYGNSSDSRYDD 62
              FKTLLQQDVKKRR YGNSSDSRYDD
Sbjct: 291439 FKTLLQQDVKKRRGYGNSSDSRYDD 291513


>gi|472269925|gb|KB714764.1| Leptonychotes weddellii isolate WS11-02
               unplaced genomic scaffold scaffold00058, whole genome
               shotgun sequence
          Length = 3450421

 Score = 67.0 bits (162), Expect = 2e-10
 Identities = 36/50 (72%), Positives = 41/50 (82%), Gaps = 3/50 (6%)
 Frame = +3

Query: 1       MVYISNGQVLDSRSQSPWRLSL---ITDFFWGIAEFVVLFFKTLLQQDVK 47
               +VY SNGQVLDS SQSP + SL   ITDFFWG+AEF+V FFK LLQQ+VK
Sbjct: 1664265 LVYNSNGQVLDS*SQSP*KSSLLSSITDFFWGVAEFMVGFFKMLLQQNVK 1664414


>gi|472269203|gb|KB715454.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00748, whole genome
              shotgun sequence
          Length = 964154

 Score = 45.1 bits (105), Expect = 8e-04
 Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = -3

Query: 1      MVYISNGQVLDSRSQSPWRLSL--ITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDS 58
              MVYI NGQ LD + QSPWR S   I       + FV   F+       +KR+ +GNSSDS
Sbjct: 357612 MVYIPNGQALDRQGQSPWR*SW*EIPSEE*LSSGFV---FQDSAAARCEKRKGFGNSSDS 357442

Query: 59     RYDD 62
              RY D
Sbjct: 357441 RYAD 357430


>gi|472269642|gb|KB715047.1| Leptonychotes weddellii isolate WS11-02
               unplaced genomic scaffold scaffold00341, whole genome
               shotgun sequence
          Length = 1937756

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 24      TDFFWGIAEFVVLFFKTLLQQDVKKRRS-YGNSSDSR 59
               TDFFWG+ E    FFK  +    ++R S  GN+S  R
Sbjct: 1566394 TDFFWGMMEIFFFFFKDFIYLFDRERHSKRGNTSRGR 1566284


>gi|472269975|gb|KB714714.1| Leptonychotes weddellii isolate WS11-02
               unplaced genomic scaffold scaffold00008, whole genome
               shotgun sequence
          Length = 7249611

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 18      WRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNS 55
               W LSL+  FF+   +F+ LF +  ++  ++ RR  G S
Sbjct: 4381623 WTLSLVLSFFFFFKDFIYLFERETMRDSMRGRRVRGRS 4381510


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.325    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 248,915,104
Number of Sequences: 16710
Number of extensions: 2439346
Number of successful extensions: 17157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 15658
Number of HSP's gapped (non-prelim): 3422
length of query: 94
length of database: 1,052,295,386
effective HSP length: 69
effective length of query: 25
effective length of database: 1,051,142,396
effective search space: 26278559900
effective search space used: 26278559900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 70 (31.6 bits)