Command line: [exonerate -m p2g --showtargetgff -q ./SelI.fa -t SelI.carpeta/genomic.fa] Hostname: [ws101095] C4 Alignment: ------------ Query: SPP00000074_2.0 # Protein # Selenoprotein I (SelI) # Human (Homo sapiens) Target: gi|472269591|gb|KB715098.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00392, whole genome shotgun sequence Model: protein2genome:local Raw score: 1955 Query range: 0 -> 397 Target range: 1125868 -> 1161907 1 : MetAlaGlyTyrGluTyrValSerProGluGlnLeuAlaGlyPheAspLysTyrLy : 19 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| MetAlaGlyTyrGluTyrValSerProGluGlnLeuAlaGlyPheAspLysTyrLy 1125869 : ATGGCTGGTTACGAATACGTGAGCCCGGAGCAGCTGGCTGGCTTTGATAAGTACAA : 1125923 20 : s >>>> Target Intron 1 >>>> TyrSerAlaValAspThrAsnProLe : 28 | 17168 bp |||||||||||||||||||||||||| s++ ++TyrSerAlaValAspThrAsnProLe 1125924 : Ggt.........................agTACAGTGCTGTGGATACCAATCCACT : 1143118 29 : uSerLeuTyrValMetHisProPheTrpAsnThrIleValLys >>>> Target : 43 ||||||||||:!!|||||||||||||||||||||||||||||| 4 uSerLeuTyrIleMetHisProPheTrpAsnThrIleValLys++ 1143119 : CTCTCTGTATATCATGCATCCATTTTGGAACACTATAGTAAAGgt........... : 1143165 44 : Intron 2 >>>> ValPheProThrTrpLeuAlaProAsnLeuIleThrPheS : 56 31 bp |||||||||||||||||||||||||||||||||||||||| ++ValPheProThrTrpLeuAlaProAsnLeuIleThrPheS 1143166 : ..............agGTATTTCCTACTTGGCTGGCTCCAAATCTGATAACCTTCT : 1143633 57 : erGlyPheLeuLeuValValPheAsnPheLeuLeuMetAlaTyrPheAspProAsp : 74 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| erGlyPheLeuLeuValValPheAsnPheLeuLeuMetAlaTyrPheAspProAsp 1143634 : CTGGCTTTCTGCTGGTTGTATTCAACTTTCTACTTATGGCATACTTTGATCCTGAC : 1143687 75 : PheTyrAlaSer{A} >>>> Target Intron 3 >>>> {la}ProGlyHi : 82 ||||||||||||{|} 2162 bp {||}||||||:! PheTyrAlaSer{A}++ ++{la}ProGlyTy 1143688 : TTTTATGCTTCA{G}gt.........................ag{CA}CCAGGTTA : 1145873 83 : sLysHisValProAspTrpValTrpIleValValGlyIleLeuAsnPheValAlaT : 101 !||||||||||||||||||||||||||||||||||||||||||||||||:!!|||| rLysHisValProAspTrpValTrpIleValValGlyIleLeuAsnPheIleAlaT 1145874 : CAAGCATGTCCCTGATTGGGTTTGGATTGTGGTGGGCATCCTCAACTTCATAGCCT : 1145930 102 : yrThrLeu{A} >>>> Target Intron 4 >>>> {sp}GlyValAspGly : 108 ||||||||{|} 4027 bp {||}|||||||||||| yrThrLeu{A}++ ++{sp}GlyValAspGly 1145931 : ACACTCTA{G}gt.........................ag{AT}GGTGTGGATGGA : 1149978 109 : LysGlnAlaArgArgThrAsnSerSerThrProLeuGlyGluLeuPheAspHisGl : 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| LysGlnAlaArgArgThrAsnSerSerThrProLeuGlyGluLeuPheAspHisGl 1149979 : AAGCAAGCCCGGAGAACCAATTCCAGCACCCCTTTAGGGGAGCTTTTTGACCATGG : 1150035 128 : yLeuAspSerTrpSerCysValTyrPheValValThrValTyrSerIlePheGlyA : 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| yLeuAspSerTrpSerCysValTyrPheValValThrValTyrSerIlePheGlyA 1150036 : CCTGGATAGTTGGTCATGTGTTTACTTTGTTGTGACTGTGTATTCCATCTTTGGAC : 1150092 147 : rgGlySerThrGlyValSerValPheValLeuTyrLeuLeuLeuTrpValValLeu : 164 ||||| !!:!!||||||||||||||||||||||||||||||||||||||||||||| rgGlyProSerGlyValSerValPheValLeuTyrLeuLeuLeuTrpValValLeu 1150093 : GAGGACCATCTGGTGTCAGTGTTTTTGTTCTTTATCTCCTGCTATGGGTAGTTTTG : 1150146 165 : PheSerPheIleLeuSerHisTrpGluLysTyrAsnThrGlyIleLeuPheLeuPr : 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| PheSerPheIleLeuSerHisTrpGluLysTyrAsnThrGlyIleLeuPheLeuPr 1150147 : TTTTCTTTCATCCTGTCCCACTGGGAAAAATATAACACAGGGATTCTTTTCCTGCC : 1150203 184 : oTrpGlyTyrAspIleSerGlnVal >>>> Target Intron 5 >>>> Th : 192 ||||||||||||||||||||||||| 1130 bp || oTrpGlyTyrAspIleSerGlnVal++ ++Th 1150204 : GTGGGGATATGACATTAGCCAAGTGgt.........................agAC : 1151360 193 : rIleSerPheValTyrIleValThrAlaValValGlyValGluAlaTrpTyrGluP : 211 ||||||||||||||||||||||||||||:!!||||||||||||||||||||||||| rIleSerPheValTyrIleValThrAlaIleValGlyValGluAlaTrpTyrGluP 1151361 : TATATCTTTTGTCTACATAGTGACTGCGATTGTGGGAGTTGAGGCCTGGTATGAAC : 1151417 212 : roPheLeuPheAsnPheLeuTyrArgAspLeuPheThrAlaMetIleIle{G} > : 228 ||||||||||||||||||||||||||||||||||||||||||||||||||{|} roPheLeuPheAsnPheLeuTyrArgAspLeuPheThrAlaMetIleIle{G}++ 1151418 : CTTTCCTGTTTAATTTCTTATATAGAGACCTATTCACTGCAATGATTATT{G}gt. : 1151471 229 : >>> Target Intron 6 >>>> {ly}CysAlaLeuCysValThrLeuProMe : 237 5278 bp {||}|||||||||||||||||||||||||| ++{ly}CysAlaLeuCysValThrLeuProMe 1151472 : ........................ag{GT}TGTGCGTTATGTGTGACTCTTCCAAT : 1156773 238 : tSerLeuLeuAsnPhePhe{Ar} >>>> Target Intron 7 >>>> {g}S : 245 |||||||||||||||||||{||} 1374 bp {|}| tSerLeuLeuAsnPhePhe{Ar}++ ++{g}S 1156774 : GAGTTTATTAAACTTTTTC{AG}gt.........................ag{A}A : 1158171 246 : erTyrLysAsnAsnThrLeuLysLeuAsnSerValTyrGluAlaMetValProLeu : 263 |||||||||||||||||||||||! !||||||:!!||||||||||||||||||!!! erTyrLysAsnAsnThrLeuLysHisAsnSerIleTyrGluAlaMetValProPhe 1158172 : GCTATAAAAATAACACCTTGAAACACAATTCAATCTATGAAGCTATGGTTCCCTTT : 1158225 264 : PheSerProCysLeuLeuPheIleLeuSerThrAlaTrpIleLeuTrpSerProSe : 282 ||||||||||||||||||||||||||||||||||||||||||||| !|||||||| PheSerProCysLeuLeuPheIleLeuSerThrAlaTrpIleLeuGlnSerProSe 1158226 : TTTTCTCCATGTTTGCTATTCATTTTGTCTACAGCATGGATCCTTCAGTCGCCTTC : 1158282 283 : rAspIleLeuGluLeuHisProArgValPheTyrPheMetValGlyThrAlaPheA : 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| rAspIleLeuGluLeuHisProArgValPheTyrPheMetValGlyThrAlaPheA 1158283 : AGATATTTTAGAGTTGCATCCTAGAGTATTCTACTTTATGGTTGGAACAGCCTTTG : 1158339 302 : laAsnSerThr >>>> Target Intron 8 >>>> CysGlnLeuIleValC : 310 |||||! !||| 1062 bp |||||||||||||||| laAsnIleThr++ ++CysGlnLeuIleValC 1158340 : CCAACATCACAgt.........................agTGTCAGCTGATTGTTT : 1159428 311 : ysGlnMetSerSerThrArgCysProThrLeuAsnTrpLeuLeuValProLeuPhe : 328 ||||||||||||||||||||||||||||||||||||||!!!||||||||||||||| ysGlnMetSerSerThrArgCysProThrLeuAsnTrpPheLeuValProLeuPhe 1159429 : GTCAAATGAGCAGCACCCGGTGCCCAACTTTGAATTGGTTCCTGGTTCCTCTTTTC : 1159482 329 : LeuValValLeuValValAsnLeuGlyValAlaSerTyrValGluSerIleLeuLe : 347 |||||||||||||||||||||||||||||| !!||||||||||||||||||||||| LeuValValLeuValValAsnLeuGlyValProSerTyrValGluSerIleLeuLe 1159483 : TTGGTTGTCCTGGTGGTAAACTTAGGAGTACCCTCTTACGTTGAGAGCATTCTCCT : 1159539 348 : uTyrThrLeuThrThrAlaPheThrLeuAlaHisIleHisTyrGlyValArgVal : 366 |||||||||||||.!!!.!||||||||||||||||||||||||||||||!:!||| uTyrThrLeuThrAlaValPheThrLeuAlaHisIleHisTyrGlyValGlnVal+ 1159540 : GTATACTTTAACAGCTGTTTTCACTCTGGCCCACATCCATTATGGAGTACAAGTGg : 1159596 367 : >>>> Target Intron 9 >>>> ValLysGlnLeuSerSerHisPheGlnI : 375 2216 bp |||||||||||||||||||||||||||| + ++ValLysGlnLeuSerSerHisPheGlnI 1159597 : t.........................agGTAAAGCAGCTGAGCAGCCATTTTCAGA : 1161839 376 : leTyrProPheSerLeuArgLysProAsnSerAspUnkLeuGlyMetGluGluLys : 393 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| leTyrProPheSerLeuArgLysProAsnSerAsp***LeuGlyMetGluGluLys 1161840 : TTTATCCCTTCTCGTTGAGGAAACCAAACTCGGATTGACTAGGAATGGAAGAAAAG : 1161893 394 : AsnIleGlyLeu : 397 |||! !|||||| AsnSerGlyLeu 1161894 : AATAGTGGCCTG : 1161907 vulgar: SPP00000074_2.0 0 397 . gi|472269591|gb|KB715098.1| 1125868 1161907 + 1955 M 19 57 5 0 2 I 0 17164 3 0 2 M 23 69 5 0 2 I 0 427 3 0 2 M 36 108 S 0 1 5 0 2 I 0 2158 3 0 2 S 1 2 M 24 72 S 0 1 5 0 2 I 0 4023 3 0 2 S 1 2 M 87 261 5 0 2 I 0 1126 3 0 2 M 36 108 S 0 1 5 0 2 I 0 5274 3 0 2 S 1 2 M 15 45 S 0 2 5 0 2 I 0 1370 3 0 2 S 1 1 M 60 180 5 0 2 I 0 1058 3 0 2 M 61 183 5 0 2 I 0 2212 3 0 2 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2013-11-14 ##type DNA # # # seqname source feature start end score strand frame attributes # gi|472269591|gb|KB715098.1| exonerate:protein2genome:local gene 1125869 1161907 1955 + . gene_id 1 ; sequence SPP00000074_2.0 ; gene_orientation + gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1125869 1125925 . + . gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1125869 1125925 . + . insertions 0 ; deletions 0 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1125926 1125927 . + . intron_id 1 ; splice_site "GT" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1125926 1143093 . + . intron_id 1 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1143092 1143093 . + . intron_id 0 ; splice_site "AG" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1143094 1143162 . + . gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1143094 1143162 . + . insertions 0 ; deletions 0 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1143163 1143164 . + . intron_id 2 ; splice_site "GT" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1143163 1143593 . + . intron_id 2 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1143592 1143593 . + . intron_id 1 ; splice_site "AG" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1143594 1143702 . + . gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1143594 1143702 . + . insertions 0 ; deletions 0 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1143703 1143704 . + . intron_id 3 ; splice_site "GT" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1143703 1145864 . + . intron_id 3 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1145863 1145864 . + . intron_id 2 ; splice_site "AG" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1145865 1145939 . + . gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1145865 1145939 . + . insertions 0 ; deletions 0 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1145940 1145941 . + . intron_id 4 ; splice_site "GT" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1145940 1149966 . + . intron_id 4 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1149965 1149966 . + . intron_id 3 ; splice_site "AG" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1149967 1150229 . + . gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1149967 1150229 . + . insertions 0 ; deletions 0 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1150230 1150231 . + . intron_id 5 ; splice_site "GT" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1150230 1151359 . + . intron_id 5 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1151358 1151359 . + . intron_id 4 ; splice_site "AG" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1151360 1151468 . + . gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1151360 1151468 . + . insertions 0 ; deletions 0 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1151469 1151470 . + . intron_id 6 ; splice_site "GT" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1151469 1156746 . + . intron_id 6 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1156745 1156746 . + . intron_id 5 ; splice_site "AG" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1156747 1156795 . + . gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1156747 1156795 . + . insertions 0 ; deletions 0 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1156796 1156797 . + . intron_id 7 ; splice_site "GT" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1156796 1158169 . + . intron_id 7 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1158168 1158169 . + . intron_id 6 ; splice_site "AG" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1158170 1158350 . + . gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1158170 1158350 . + . insertions 0 ; deletions 0 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1158351 1158352 . + . intron_id 8 ; splice_site "GT" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1158351 1159412 . + . intron_id 8 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1159411 1159412 . + . intron_id 7 ; splice_site "AG" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1159413 1159595 . + . gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1159413 1159595 . + . insertions 0 ; deletions 0 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1159596 1159597 . + . intron_id 9 ; splice_site "GT" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1159596 1161811 . + . intron_id 9 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1161810 1161811 . + . intron_id 8 ; splice_site "AG" gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1161812 1161907 . + . gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1161812 1161907 . + . insertions 0 ; deletions 0 gi|472269591|gb|KB715098.1| exonerate:protein2genome:local similarity 1125869 1161907 1955 + . alignment_id 1 ; Query SPP00000074_2.0 ; Align 1125869 1 57 ; Align 1143094 20 69 ; Align 1143594 43 108 ; Align 1145867 80 72 ; Align 1149969 105 261 ; Align 1151360 192 108 ; Align 1156749 229 45 ; Align 1158171 245 180 ; Align 1159413 305 183 ; Align 1161812 366 96 # --- END OF GFF DUMP --- # -- completed exonerate analysis