Command line: [exonerate -m p2g --showtargetgff -q ./SelI.fa -t SelI.carpeta/genomic.fa]
Hostname: [ws101095]
C4 Alignment:
------------
Query: SPP00000074_2.0 # Protein # Selenoprotein I (SelI) # Human (Homo sapiens)
Target: gi|472269591|gb|KB715098.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00392, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 1955
Query range: 0 -> 397
Target range: 1125868 -> 1161907
1 : MetAlaGlyTyrGluTyrValSerProGluGlnLeuAlaGlyPheAspLysTyrLy : 19
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MetAlaGlyTyrGluTyrValSerProGluGlnLeuAlaGlyPheAspLysTyrLy
1125869 : ATGGCTGGTTACGAATACGTGAGCCCGGAGCAGCTGGCTGGCTTTGATAAGTACAA : 1125923
20 : s >>>> Target Intron 1 >>>> TyrSerAlaValAspThrAsnProLe : 28
| 17168 bp ||||||||||||||||||||||||||
s++ ++TyrSerAlaValAspThrAsnProLe
1125924 : Ggt.........................agTACAGTGCTGTGGATACCAATCCACT : 1143118
29 : uSerLeuTyrValMetHisProPheTrpAsnThrIleValLys >>>> Target : 43
||||||||||:!!|||||||||||||||||||||||||||||| 4
uSerLeuTyrIleMetHisProPheTrpAsnThrIleValLys++
1143119 : CTCTCTGTATATCATGCATCCATTTTGGAACACTATAGTAAAGgt........... : 1143165
44 : Intron 2 >>>> ValPheProThrTrpLeuAlaProAsnLeuIleThrPheS : 56
31 bp ||||||||||||||||||||||||||||||||||||||||
++ValPheProThrTrpLeuAlaProAsnLeuIleThrPheS
1143166 : ..............agGTATTTCCTACTTGGCTGGCTCCAAATCTGATAACCTTCT : 1143633
57 : erGlyPheLeuLeuValValPheAsnPheLeuLeuMetAlaTyrPheAspProAsp : 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
erGlyPheLeuLeuValValPheAsnPheLeuLeuMetAlaTyrPheAspProAsp
1143634 : CTGGCTTTCTGCTGGTTGTATTCAACTTTCTACTTATGGCATACTTTGATCCTGAC : 1143687
75 : PheTyrAlaSer{A} >>>> Target Intron 3 >>>> {la}ProGlyHi : 82
||||||||||||{|} 2162 bp {||}||||||:!
PheTyrAlaSer{A}++ ++{la}ProGlyTy
1143688 : TTTTATGCTTCA{G}gt.........................ag{CA}CCAGGTTA : 1145873
83 : sLysHisValProAspTrpValTrpIleValValGlyIleLeuAsnPheValAlaT : 101
!||||||||||||||||||||||||||||||||||||||||||||||||:!!||||
rLysHisValProAspTrpValTrpIleValValGlyIleLeuAsnPheIleAlaT
1145874 : CAAGCATGTCCCTGATTGGGTTTGGATTGTGGTGGGCATCCTCAACTTCATAGCCT : 1145930
102 : yrThrLeu{A} >>>> Target Intron 4 >>>> {sp}GlyValAspGly : 108
||||||||{|} 4027 bp {||}||||||||||||
yrThrLeu{A}++ ++{sp}GlyValAspGly
1145931 : ACACTCTA{G}gt.........................ag{AT}GGTGTGGATGGA : 1149978
109 : LysGlnAlaArgArgThrAsnSerSerThrProLeuGlyGluLeuPheAspHisGl : 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LysGlnAlaArgArgThrAsnSerSerThrProLeuGlyGluLeuPheAspHisGl
1149979 : AAGCAAGCCCGGAGAACCAATTCCAGCACCCCTTTAGGGGAGCTTTTTGACCATGG : 1150035
128 : yLeuAspSerTrpSerCysValTyrPheValValThrValTyrSerIlePheGlyA : 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
yLeuAspSerTrpSerCysValTyrPheValValThrValTyrSerIlePheGlyA
1150036 : CCTGGATAGTTGGTCATGTGTTTACTTTGTTGTGACTGTGTATTCCATCTTTGGAC : 1150092
147 : rgGlySerThrGlyValSerValPheValLeuTyrLeuLeuLeuTrpValValLeu : 164
||||| !!:!!|||||||||||||||||||||||||||||||||||||||||||||
rgGlyProSerGlyValSerValPheValLeuTyrLeuLeuLeuTrpValValLeu
1150093 : GAGGACCATCTGGTGTCAGTGTTTTTGTTCTTTATCTCCTGCTATGGGTAGTTTTG : 1150146
165 : PheSerPheIleLeuSerHisTrpGluLysTyrAsnThrGlyIleLeuPheLeuPr : 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PheSerPheIleLeuSerHisTrpGluLysTyrAsnThrGlyIleLeuPheLeuPr
1150147 : TTTTCTTTCATCCTGTCCCACTGGGAAAAATATAACACAGGGATTCTTTTCCTGCC : 1150203
184 : oTrpGlyTyrAspIleSerGlnVal >>>> Target Intron 5 >>>> Th : 192
||||||||||||||||||||||||| 1130 bp ||
oTrpGlyTyrAspIleSerGlnVal++ ++Th
1150204 : GTGGGGATATGACATTAGCCAAGTGgt.........................agAC : 1151360
193 : rIleSerPheValTyrIleValThrAlaValValGlyValGluAlaTrpTyrGluP : 211
||||||||||||||||||||||||||||:!!|||||||||||||||||||||||||
rIleSerPheValTyrIleValThrAlaIleValGlyValGluAlaTrpTyrGluP
1151361 : TATATCTTTTGTCTACATAGTGACTGCGATTGTGGGAGTTGAGGCCTGGTATGAAC : 1151417
212 : roPheLeuPheAsnPheLeuTyrArgAspLeuPheThrAlaMetIleIle{G} > : 228
||||||||||||||||||||||||||||||||||||||||||||||||||{|}
roPheLeuPheAsnPheLeuTyrArgAspLeuPheThrAlaMetIleIle{G}++
1151418 : CTTTCCTGTTTAATTTCTTATATAGAGACCTATTCACTGCAATGATTATT{G}gt. : 1151471
229 : >>> Target Intron 6 >>>> {ly}CysAlaLeuCysValThrLeuProMe : 237
5278 bp {||}||||||||||||||||||||||||||
++{ly}CysAlaLeuCysValThrLeuProMe
1151472 : ........................ag{GT}TGTGCGTTATGTGTGACTCTTCCAAT : 1156773
238 : tSerLeuLeuAsnPhePhe{Ar} >>>> Target Intron 7 >>>> {g}S : 245
|||||||||||||||||||{||} 1374 bp {|}|
tSerLeuLeuAsnPhePhe{Ar}++ ++{g}S
1156774 : GAGTTTATTAAACTTTTTC{AG}gt.........................ag{A}A : 1158171
246 : erTyrLysAsnAsnThrLeuLysLeuAsnSerValTyrGluAlaMetValProLeu : 263
|||||||||||||||||||||||! !||||||:!!||||||||||||||||||!!!
erTyrLysAsnAsnThrLeuLysHisAsnSerIleTyrGluAlaMetValProPhe
1158172 : GCTATAAAAATAACACCTTGAAACACAATTCAATCTATGAAGCTATGGTTCCCTTT : 1158225
264 : PheSerProCysLeuLeuPheIleLeuSerThrAlaTrpIleLeuTrpSerProSe : 282
||||||||||||||||||||||||||||||||||||||||||||| !||||||||
PheSerProCysLeuLeuPheIleLeuSerThrAlaTrpIleLeuGlnSerProSe
1158226 : TTTTCTCCATGTTTGCTATTCATTTTGTCTACAGCATGGATCCTTCAGTCGCCTTC : 1158282
283 : rAspIleLeuGluLeuHisProArgValPheTyrPheMetValGlyThrAlaPheA : 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rAspIleLeuGluLeuHisProArgValPheTyrPheMetValGlyThrAlaPheA
1158283 : AGATATTTTAGAGTTGCATCCTAGAGTATTCTACTTTATGGTTGGAACAGCCTTTG : 1158339
302 : laAsnSerThr >>>> Target Intron 8 >>>> CysGlnLeuIleValC : 310
|||||! !||| 1062 bp ||||||||||||||||
laAsnIleThr++ ++CysGlnLeuIleValC
1158340 : CCAACATCACAgt.........................agTGTCAGCTGATTGTTT : 1159428
311 : ysGlnMetSerSerThrArgCysProThrLeuAsnTrpLeuLeuValProLeuPhe : 328
||||||||||||||||||||||||||||||||||||||!!!|||||||||||||||
ysGlnMetSerSerThrArgCysProThrLeuAsnTrpPheLeuValProLeuPhe
1159429 : GTCAAATGAGCAGCACCCGGTGCCCAACTTTGAATTGGTTCCTGGTTCCTCTTTTC : 1159482
329 : LeuValValLeuValValAsnLeuGlyValAlaSerTyrValGluSerIleLeuLe : 347
|||||||||||||||||||||||||||||| !!|||||||||||||||||||||||
LeuValValLeuValValAsnLeuGlyValProSerTyrValGluSerIleLeuLe
1159483 : TTGGTTGTCCTGGTGGTAAACTTAGGAGTACCCTCTTACGTTGAGAGCATTCTCCT : 1159539
348 : uTyrThrLeuThrThrAlaPheThrLeuAlaHisIleHisTyrGlyValArgVal : 366
|||||||||||||.!!!.!||||||||||||||||||||||||||||||!:!|||
uTyrThrLeuThrAlaValPheThrLeuAlaHisIleHisTyrGlyValGlnVal+
1159540 : GTATACTTTAACAGCTGTTTTCACTCTGGCCCACATCCATTATGGAGTACAAGTGg : 1159596
367 : >>>> Target Intron 9 >>>> ValLysGlnLeuSerSerHisPheGlnI : 375
2216 bp ||||||||||||||||||||||||||||
+ ++ValLysGlnLeuSerSerHisPheGlnI
1159597 : t.........................agGTAAAGCAGCTGAGCAGCCATTTTCAGA : 1161839
376 : leTyrProPheSerLeuArgLysProAsnSerAspUnkLeuGlyMetGluGluLys : 393
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
leTyrProPheSerLeuArgLysProAsnSerAsp***LeuGlyMetGluGluLys
1161840 : TTTATCCCTTCTCGTTGAGGAAACCAAACTCGGATTGACTAGGAATGGAAGAAAAG : 1161893
394 : AsnIleGlyLeu : 397
|||! !||||||
AsnSerGlyLeu
1161894 : AATAGTGGCCTG : 1161907
vulgar: SPP00000074_2.0 0 397 . gi|472269591|gb|KB715098.1| 1125868 1161907 + 1955 M 19 57 5 0 2 I 0 17164 3 0 2 M 23 69 5 0 2 I 0 427 3 0 2 M 36 108 S 0 1 5 0 2 I 0 2158 3 0 2 S 1 2 M 24 72 S 0 1 5 0 2 I 0 4023 3 0 2 S 1 2 M 87 261 5 0 2 I 0 1126 3 0 2 M 36 108 S 0 1 5 0 2 I 0 5274 3 0 2 S 1 2 M 15 45 S 0 2 5 0 2 I 0 1370 3 0 2 S 1 1 M 60 180 5 0 2 I 0 1058 3 0 2 M 61 183 5 0 2 I 0 2212 3 0 2 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local gene 1125869 1161907 1955 + . gene_id 1 ; sequence SPP00000074_2.0 ; gene_orientation +
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1125869 1125925 . + .
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1125869 1125925 . + . insertions 0 ; deletions 0
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1125926 1125927 . + . intron_id 1 ; splice_site "GT"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1125926 1143093 . + . intron_id 1
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1143092 1143093 . + . intron_id 0 ; splice_site "AG"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1143094 1143162 . + .
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1143094 1143162 . + . insertions 0 ; deletions 0
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1143163 1143164 . + . intron_id 2 ; splice_site "GT"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1143163 1143593 . + . intron_id 2
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1143592 1143593 . + . intron_id 1 ; splice_site "AG"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1143594 1143702 . + .
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1143594 1143702 . + . insertions 0 ; deletions 0
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1143703 1143704 . + . intron_id 3 ; splice_site "GT"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1143703 1145864 . + . intron_id 3
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1145863 1145864 . + . intron_id 2 ; splice_site "AG"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1145865 1145939 . + .
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1145865 1145939 . + . insertions 0 ; deletions 0
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1145940 1145941 . + . intron_id 4 ; splice_site "GT"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1145940 1149966 . + . intron_id 4
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1149965 1149966 . + . intron_id 3 ; splice_site "AG"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1149967 1150229 . + .
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1149967 1150229 . + . insertions 0 ; deletions 0
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1150230 1150231 . + . intron_id 5 ; splice_site "GT"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1150230 1151359 . + . intron_id 5
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1151358 1151359 . + . intron_id 4 ; splice_site "AG"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1151360 1151468 . + .
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1151360 1151468 . + . insertions 0 ; deletions 0
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1151469 1151470 . + . intron_id 6 ; splice_site "GT"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1151469 1156746 . + . intron_id 6
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1156745 1156746 . + . intron_id 5 ; splice_site "AG"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1156747 1156795 . + .
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1156747 1156795 . + . insertions 0 ; deletions 0
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1156796 1156797 . + . intron_id 7 ; splice_site "GT"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1156796 1158169 . + . intron_id 7
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1158168 1158169 . + . intron_id 6 ; splice_site "AG"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1158170 1158350 . + .
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1158170 1158350 . + . insertions 0 ; deletions 0
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1158351 1158352 . + . intron_id 8 ; splice_site "GT"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1158351 1159412 . + . intron_id 8
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1159411 1159412 . + . intron_id 7 ; splice_site "AG"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1159413 1159595 . + .
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1159413 1159595 . + . insertions 0 ; deletions 0
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice5 1159596 1159597 . + . intron_id 9 ; splice_site "GT"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local intron 1159596 1161811 . + . intron_id 9
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local splice3 1161810 1161811 . + . intron_id 8 ; splice_site "AG"
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local cds 1161812 1161907 . + .
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local exon 1161812 1161907 . + . insertions 0 ; deletions 0
gi|472269591|gb|KB715098.1| exonerate:protein2genome:local similarity 1125869 1161907 1955 + . alignment_id 1 ; Query SPP00000074_2.0 ; Align 1125869 1 57 ; Align 1143094 20 69 ; Align 1143594 43 108 ; Align 1145867 80 72 ; Align 1149969 105 261 ; Align 1151360 192 108 ; Align 1156749 229 45 ; Align 1158171 245 180 ; Align 1159413 305 183 ; Align 1161812 366 96
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis