TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000074_2.0 # Protein # Selenoprotein I (SelI) # Human
(Homo sapiens)
(397 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472269591|gb|KB715098.1| Leptonychotes weddellii isolate WS11... 147 1e-33
gi|472269696|gb|KB714993.1| Leptonychotes weddellii isolate WS11... 64 1e-08
gi|472269593|gb|KB715096.1| Leptonychotes weddellii isolate WS11... 62 5e-08
gi|472269247|gb|KB715410.1| Leptonychotes weddellii isolate WS11... 37 2.3
gi|472269082|gb|KB715575.1| Leptonychotes weddellii isolate WS11... 35 8.7
>gi|472269591|gb|KB715098.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00392, whole genome
shotgun sequence
Length = 1373514
Score = 147 bits (371), Expect = 1e-33
Identities = 80/130 (61%), Positives = 86/130 (66%)
Frame = +3
Query: 62 VFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLG 121
+F F+ + + DF + G P W V FVA DGVDGKQARRTNSSTPLG
Sbjct: 1149870 LFCFMFLQFIKEDFPHTGTGVDLFP---W*CV----FVA---DGVDGKQARRTNSSTPLG 1150019
Query: 122 ELFDHGLDSWSCVYFVVTVYSIFGRGSTGXXXXXXXXXXXXXXXXXILSHWEKYNTGILF 181
ELFDHGLDSWSCVYFVVTVYSIFGRG +G ILSHWEKYNTGILF
Sbjct: 1150020 ELFDHGLDSWSCVYFVVTVYSIFGRGPSGVSVFVLYLLLWVVLFSFILSHWEKYNTGILF 1150199
Query: 182 LPWGYDISQV 191
LPWGYDISQV
Sbjct: 1150200 LPWGYDISQV 1150229
Score = 122 bits (305), Expect = 5e-26
Identities = 59/72 (81%), Positives = 63/72 (87%)
Frame = +3
Query: 242 FFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAFA 301
FFRSYKNNTLK NS+YEAMVP FSPCLLFILSTAWIL SPSDILELHPRVFYFMVGTAFA
Sbjct: 1158162 FFRSYKNNTLKHNSIYEAMVPFFSPCLLFILSTAWILQSPSDILELHPRVFYFMVGTAFA 1158341
Query: 302 NSTCQLIVCQMS 313
N T + ++S
Sbjct: 1158342 NITVRFFSFKIS 1158377
Score = 80.9 bits (198), Expect = 1e-13
Identities = 44/67 (65%), Positives = 48/67 (71%)
Frame = +2
Query: 192 TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLLNFFRSYKNNTL 251
TISFVYIVTA+VGVEAWYEPFLFNFLYRDLFTAMIIG L V +Y N TL
Sbjct: 1151360 TISFVYIVTAIVGVEAWYEPFLFNFLYRDLFTAMIIGKKLHV----------EAYFNITL 1151509
Query: 252 KLNSVYE 258
L V++
Sbjct: 1151510 LLKPVFD 1151530
Score = 79.0 bits (193), Expect = 5e-13
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = +3
Query: 43 VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYAS 78
VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYAS
Sbjct: 1143594 VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYAS 1143701
Score = 65.1 bits (157), Expect = 8e-09
Identities = 34/71 (47%), Positives = 36/71 (50%)
Frame = +3
Query: 302 NSTCQLIVCQMSSTRCPTLNWXXXXXXXXXXXXXXXXASYVESIXXXXXXXXXXXXHIHY 361
N CQLIVCQMSSTRCPTLNW SYVESI HIHY
Sbjct: 1159404 NFKCQLIVCQMSSTRCPTLNWFLVPLFLVVLVVNLGVPSYVESILLYTLTAVFTLAHIHY 1159583
Query: 362 GVRVVKQLSSH 372
GV+VV L +
Sbjct: 1159584 GVQVVSTLEQN 1159616
Score = 62.8 bits (151), Expect = 4e-08
Identities = 31/36 (86%), Positives = 31/36 (86%)
Frame = +2
Query: 362 GVRVVKQLSSHFQIYPFSLRKPNSDXLGMEEKNIGL 397
G VKQLSSHFQIYPFSLRKPNSD LGMEEKN GL
Sbjct: 1161800 GFPQVKQLSSHFQIYPFSLRKPNSD*LGMEEKNSGL 1161907
Score = 59.3 bits (142), Expect = 4e-07
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +2
Query: 75 FYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSS 117
F +APG+KHVPDWVWIVVGILNF+AYTL GK+ T+ S
Sbjct: 1145852 FSFAAPGYKHVPDWVWIVVGILNFIAYTL----GKKMANTHVS 1145968
Score = 55.1 bits (131), Expect = 8e-06
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +1
Query: 19 KYSAVDTNPLSLYVMHPFWNTIVKV 43
+YSAVDTNPLSLY+MHPFWNTIVKV
Sbjct: 1143091 QYSAVDTNPLSLYIMHPFWNTIVKV 1143165
Score = 43.9 bits (102), Expect = 0.019
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 1 MAGYEYVSPEQLAGFDKYK 19
MAGYEYVSPEQLAGFDKYK
Sbjct: 1125869 MAGYEYVSPEQLAGFDKYK 1125925
Score = 41.6 bits (96), Expect = 0.093
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +3
Query: 226 IIGCALCVTLPMSLLNFFR 244
++GCALCVTLPMSLLNFFR
Sbjct: 1156740 LLGCALCVTLPMSLLNFFR 1156796
>gi|472269696|gb|KB714993.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00287, whole genome
shotgun sequence
Length = 1616081
Score = 64.3 bits (155), Expect = 1e-08
Identities = 38/97 (39%), Positives = 50/97 (51%)
Frame = +3
Query: 47 WLAPNLITFSGFLLVVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGV 106
WL N LL FN ++ YF P W +++ + F+ +LD +
Sbjct: 823116 WLRLNCFQTEASLLS-FNSIIYIYF*------------APYWTYLLCALGLFIYQSLDAI 823256
Query: 107 DGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSI 143
DGKQARRTNS +PLGELFDHG DS S V +S+
Sbjct: 823257 DGKQARRTNSCSPLGELFDHGCDSLSTGKLVKVFFSL 823367
>gi|472269593|gb|KB715096.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00390, whole genome
shotgun sequence
Length = 1441730
Score = 62.4 bits (150), Expect = 5e-08
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = +1
Query: 86 PDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWS 132
P W +I F+ +LD +DGKQARRTNSS+PLGELFDHG DS S
Sbjct: 1140025 PLWAYIACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLS 1140165
Score = 40.4 bits (93), Expect = 0.21
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = +2
Query: 7 VSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFNFL 66
+S QL ++++Y + + L +M +W +V P+W+APNLIT G + + +
Sbjct: 1134446 LSRHQLKRLEEHRYQSAGRSLLEP-LMQGYWEWLVGRVPSWIAPNLITIIGLSINICTTV 1134622
Query: 67 LMAYFDP 73
L+ ++ P
Sbjct: 1134623 LLVFYCP 1134643
>gi|472269247|gb|KB715410.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00704, whole genome
shotgun sequence
Length = 1000651
Score = 37.0 bits (84), Expect = 2.3
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Frame = +3
Query: 212 FLFNFLYRDLFTAMIIGCALCVTLPMSLLNFFRSYKNNTLKLNSVYEAMVPLFSP----- 266
++F FLYR L C C +S +FFR Y N L + E +PLF P
Sbjct: 426147 YIFKFLYRTLCL-----CPCCFVCFLSCGSFFRDYYQNNAGLIKLIEIHIPLFCPPEEFV 426311
Query: 267 --CLLFIL 272
C L +L
Sbjct: 426312 *NCALLVL 426335
>gi|472269082|gb|KB715575.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00869, whole genome
shotgun sequence
Length = 931946
Score = 35.0 bits (79), Expect = 8.7
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = -2
Query: 256 VYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAFANSTCQLIVCQMSST 315
+Y+ ++PLF PCL F S++ + WS ++LHP F +V + S+C CQ + +
Sbjct: 362137 IYK*ILPLFYPCL*FESSSS-VTWS----MQLHPTFFLLLVSPT-STSSCYCSDCQNNHS 361976
Query: 316 R 316
+
Sbjct: 361975 K 361973
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.327 0.141 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,616,695,279
Number of Sequences: 16710
Number of extensions: 25971643
Number of successful extensions: 183484
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 1093
Number of HSP's that attempted gapping in prelim test: 156277
Number of HSP's gapped (non-prelim): 67148
length of query: 397
length of database: 1,052,295,386
effective HSP length: 134
effective length of query: 263
effective length of database: 1,050,056,246
effective search space: 276164792698
effective search space used: 276164792698
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 79 (35.0 bits)