Command line: [exonerate -m p2g --showtargetgff -q ./SelH.fa -t SelH.carpeta/genomic.fa]
Hostname: [ws101086]
C4 Alignment:
------------
Query: SPP00000070_2.0 # Protein # Selenoprotein H (SelH) # Human (Homo sapiens)
Target: gi|472269976|gb|KB714713.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00007, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 506
Query range: 0 -> 122
Target range: 3686643 -> 3686277
1 : MetAlaProArgGlyArgLysArgLysAlaGluAlaAlaValValAlaValAlaGl : 19
|||||| !!||||||||||||||||||||||||!.!||||||||||||!.!|||!
MetAlaSerArgGlyArgLysArgLysAlaGluValAlaValValAlaAlaAlaAl
3686643 : ATGGCTTCCCGGGGCAGAAAGCGGAAGGCCGAAGTGGCGGTGGTCGCGGCGGCGGC : 3686589
20 : uLysArgGluLysLeuAlaAsnGlyGlyGluGlyMetGluGluAlaThrValValI : 38
!|||!:!||||||! !|||..!||| !!:!!!.!:!!|||! |||||||||||||
aLysGlnGluLysProAlaGlyGlyArgLysAlaValGluAlaAlaThrValValI
3686588 : GAAACAGGAGAAGCCGGCGGGCGGCCGGAAGGCAGTGGAGGCCGCGACCGTCGTGA : 3686532
39 : leGluHisCysThrSerUnkArgValTyrGlyArgAsnAlaAlaAlaLeuSerGln : 56
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
leGluHisCysThrSer***ArgValTyrGlyArgAsnAlaAlaAlaLeuSerGln
3686531 : TCGAGCATTGCACGAGCTGACGCGTCTACGGGCGCAACGCCGCGGCCCTGAGCCAG : 3686478
57 : AlaLeuArgLeuGluAlaProGluLeuProValLysValAsnProThrLysProAr : 75
|||||||||||||||.!!|||||||||||||||:!!|||||||||.!!||||||||
AlaLeuArgLeuGluThrProGluLeuProValGluValAsnProAlaLysProAr
3686477 : GCGCTGCGCCTGGAGACCCCGGAGCTTCCGGTGGAGGTGAATCCTGCCAAGCCCCG : 3686421
76 : gArgGlySerPheGluValThrLeuLeuArgProAspGlySerSerAlaGluLeuT : 94
||||||||||!!.|||||||||||||||||||||||||||||||||!.!|||||||
gArgGlySerLeuGluValThrLeuLeuArgProAspGlySerSerValGluLeuT
3686420 : GAGGGGCAGCTTGGAGGTGACGCTGCTGCGCCCGGACGGCAGCAGTGTGGAGCTCT : 3686364
95 : rpThrGlyIleLysLysGlyProProArgLysLeuLysPheProGluProGlnGlu : 112
|||||||||||:!!||||||||||||||||||||||||||||||||||||||||||
rpThrGlyIleGlnLysGlyProProArgLysLeuLysPheProGluProGlnGlu
3686363 : GGACTGGGATTCAGAAGGGGCCCCCACGCAAACTCAAGTTCCCTGAGCCTCAAGAG : 3686310
113 : ValValGluGluLeuLysLysTyrLeuSer : 122
||||||:!!||||||||||||:!!||||||
ValValLysGluLeuLysLysHisLeuSer
3686309 : GTGGTGAAGGAGCTGAAGAAGCACCTTTCG : 3686278
vulgar: SPP00000070_2.0 0 122 . gi|472269976|gb|KB714713.1| 3686643 3686277 - 506 M 122 366
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269976|gb|KB714713.1| exonerate:protein2genome:local gene 3686278 3686643 506 - . gene_id 1 ; sequence SPP00000070_2.0 ; gene_orientation .
gi|472269976|gb|KB714713.1| exonerate:protein2genome:local cds 3686278 3686643 . - .
gi|472269976|gb|KB714713.1| exonerate:protein2genome:local exon 3686278 3686643 . - . insertions 0 ; deletions 0
gi|472269976|gb|KB714713.1| exonerate:protein2genome:local similarity 3686278 3686643 506 - . alignment_id 1 ; Query SPP00000070_2.0 ; Align 3686644 1 366
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis