TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000070_2.0 # Protein # Selenoprotein H (SelH) # Human (Homo sapiens) (122 letters) Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno me.fa 16,710 sequences; 3,156,886,159 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|472269976|gb|KB714713.1| Leptonychotes weddellii isolate WS11... 168 5e-41 gi|472269882|gb|KB714807.1| Leptonychotes weddellii isolate WS11... 130 2e-29 gi|472268530|gb|KB716127.1| Leptonychotes weddellii isolate WS11... 41 0.015 gi|472267969|gb|KB716688.1| Leptonychotes weddellii isolate WS11... 35 0.63 gi|472268859|gb|KB715798.1| Leptonychotes weddellii isolate WS11... 34 1.8 gi|472268153|gb|KB716504.1| Leptonychotes weddellii isolate WS11... 32 7.0 gi|472268444|gb|KB716213.1| Leptonychotes weddellii isolate WS11... 32 7.0 gi|472268740|gb|KB715917.1| Leptonychotes weddellii isolate WS11... 32 7.0 gi|472269836|gb|KB714853.1| Leptonychotes weddellii isolate WS11... 32 7.0 gi|472269907|gb|KB714782.1| Leptonychotes weddellii isolate WS11... 32 7.0 gi|472265463|gb|KB719194.1| Leptonychotes weddellii isolate WS11... 32 9.1 gi|472265540|gb|KB719117.1| Leptonychotes weddellii isolate WS11... 32 9.1 >gi|472269976|gb|KB714713.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00007, whole genome shotgun sequence Length = 6702950 Score = 168 bits (426), Expect = 5e-41 Identities = 83/98 (84%), Positives = 89/98 (90%) Frame = -3 Query: 25 ANGGEGMEEATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLL 84 A G + +E ATVVIEHCTS RVYGRNAAALSQALRLE PELPV+VNP KPRRGS EVTLL Sbjct: 3686571 AGGRKAVEAATVVIEHCTS*RVYGRNAAALSQALRLETPELPVEVNPAKPRRGSLEVTLL 3686392 Query: 85 RPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKYLS 122 RPDGSS ELWTGI+KGPPRKLKFPEPQEVV+ELKK+LS Sbjct: 3686391 RPDGSSVELWTGIQKGPPRKLKFPEPQEVVKELKKHLS 3686278 >gi|472269882|gb|KB714807.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00101, whole genome shotgun sequence Length = 2603626 Score = 130 bits (326), Expect = 2e-29 Identities = 73/120 (60%), Positives = 77/120 (64%), Gaps = 39/120 (32%) Frame = -1 Query: 42 TSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSS----------- 90 TS RVYGRNAAALSQALRLE P+LPV+VNP KPRRGSFEVTLLRPDGSS Sbjct: 750682 TS*RVYGRNAAALSQALRLETPDLPVEVNPAKPRRGSFEVTLLRPDGSSEWRPGSRREAL 750503 Query: 91 ----------------------------AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS 122 ELWTGIKKGPPRKLKFPEPQEVV+ELKK+LS Sbjct: 750502 GSARGHLGIWGTCWCIPK*LRFLGLFPGVELWTGIKKGPPRKLKFPEPQEVVKELKKHLS 750323 >gi|472268530|gb|KB716127.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01421, whole genome shotgun sequence Length = 645381 Score = 40.8 bits (94), Expect = 0.015 Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 4/37 (10%) Frame = +3 Query: 89 SSAELWTGIKKGPP----RKLKFPEPQEVVEELKKYL 121 S +LW G++K PP K+KF EPQE+VEEL+K L Sbjct: 366339 SCVQLWAGMEKRPPPHPQSKVKFSEPQEMVEELQKCL 366449 >gi|472267969|gb|KB716688.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01982, whole genome shotgun sequence Length = 484971 Score = 35.4 bits (80), Expect = 0.63 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Frame = -3 Query: 45 RVYGRNAAALSQALRLEAPELPVKVN-PTKPRRGSFEVT--LLRPDGSSAELWTGIKKGP 101 R A +L+ A P +P +V T+P GS LRP+G +W G GP Sbjct: 161428 RTSSLRAGSLAWAAPPARPPVPREVTGKTEPPHGSGNEAGGSLRPEG*EVMVWLGGAVGP 161249 Query: 102 PRKLKFPEPQEVVEEL 117 KL+ P+P+ V+ L Sbjct: 161248 LTKLRRPQPEGAVQSL 161201 >gi|472268859|gb|KB715798.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01092, whole genome shotgun sequence Length = 785425 Score = 33.9 bits (76), Expect = 1.8 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +2 Query: 71 PTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKYL 121 P P+ E+ L +S+E+ IKK P+K KFP P + E K+L Sbjct: 329045 PNLPKLNREEIQNLNRPITSSEIEAVIKKNSPQKTKFPRPDGLTGESTKHL 329197 >gi|472268153|gb|KB716504.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01798, whole genome shotgun sequence Length = 578535 Score = 32.0 bits (71), Expect = 7.0 Identities = 12/23 (52%), Positives = 18/23 (78%) Frame = -2 Query: 59 RLEAPELPVKVNPTKPRRGSFEV 81 R+ AP +PV+V+PT P RGS ++ Sbjct: 187499 RVPAPSVPVRVSPTSPARGSIQM 187431 >gi|472268444|gb|KB716213.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01507, whole genome shotgun sequence Length = 695951 Score = 32.0 bits (71), Expect = 7.0 Identities = 11/24 (45%), Positives = 20/24 (83%) Frame = -3 Query: 61 EAPELPVKVNPTKPRRGSFEVTLL 84 EAP++PV++ PT+P+ SF +++L Sbjct: 570018 EAPQIPVRIRPTRPKSYSFLISVL 569947 >gi|472268740|gb|KB715917.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01211, whole genome shotgun sequence Length = 688821 Score = 32.0 bits (71), Expect = 7.0 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%) Frame = +1 Query: 38 IEHCTSURVYGRNAAALSQALRLEAPELPVK---VNPTKPRRGSFEVTLLRPDGSSAELW 94 ++ C S R+ +AL L L + + NP + + F L+ DG+ A+ W Sbjct: 546544 LQQCLSMEAAVRDLSALHNCLALRCFKRQIS*CISNPVRVAKI*FPCNFLKEDGNLAQAW 546723 Query: 95 TGIKKGPPRKLKFPEPQEVVEE 116 G K G +++P +E+ +E Sbjct: 546724 IGTKAG---AMQWPGSREMRQE 546780 >gi|472269836|gb|KB714853.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00147, whole genome shotgun sequence Length = 2252916 Score = 32.0 bits (71), Expect = 7.0 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = -3 Query: 62 APELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQE 112 +P P P+ P RG+ L R AELWT +G L+FP + Sbjct: 1260925 SPRRPSTTGPSWPCRGTGAFWLGRRSSLRAELWTS*MQGSGEPLRFPSAHD 1260773 >gi|472269907|gb|KB714782.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00076, whole genome shotgun sequence Length = 2698772 Score = 32.0 bits (71), Expect = 7.0 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = -3 Query: 60 LEAPELPVKVNPTKPRRGSFE--VTLLRPDGSSAELWTGIKKGPPR 103 L++P LP + + RG + VTL P G A LW GIKKGP R Sbjct: 701487 LQSPHLPWAGSELQDPRGRTQGLVTLPVPTGKPA-LWWGIKKGPGR 701353 >gi|472265463|gb|KB719194.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold04488, whole genome shotgun sequence Length = 115397 Score = 31.6 bits (70), Expect = 9.1 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = -3 Query: 54 LSQALRLEAP-ELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQE 112 LS++ LEA P P K +G F+ L R DG + W G+ G PR+ P+P Sbjct: 6066 LSKSEGLEAKLSCPSSSLPQKRNKGDFQNNL-RGDGGGRQPWDGLSLGRPRRP--PKPLG 5896 Query: 113 VVEE 116 +++E Sbjct: 5895 LIKE 5884 >gi|472265540|gb|KB719117.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold04411, whole genome shotgun sequence Length = 123470 Score = 31.6 bits (70), Expect = 9.1 Identities = 16/28 (57%), Positives = 19/28 (67%) Frame = -2 Query: 51 AAALSQALRLEAPELPVKVNPTKPRRGS 78 AAA + A + EAP+LP NPTKP GS Sbjct: 68101 AAAFTAAGKEEAPKLPNAENPTKPTGGS 68018 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 3,087,506,849 Number of sequences in database: 5788 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa.01 Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 69,379,310 Number of sequences in database: 10,922 Lambda K H 0.312 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 364,696,651 Number of Sequences: 16710 Number of extensions: 4916662 Number of successful extensions: 17286 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 768 Number of HSP's successfully gapped in prelim test: 369 Number of HSP's that attempted gapping in prelim test: 15464 Number of HSP's gapped (non-prelim): 4258 length of query: 122 length of database: 1,052,295,386 effective HSP length: 97 effective length of query: 25 effective length of database: 1,050,674,516 effective search space: 26266862900 effective search space used: 26266862900 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 70 (31.6 bits)