TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000070_2.0 # Protein # Selenoprotein H (SelH) # Human
(Homo sapiens)
(122 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472269976|gb|KB714713.1| Leptonychotes weddellii isolate WS11... 168 5e-41
gi|472269882|gb|KB714807.1| Leptonychotes weddellii isolate WS11... 130 2e-29
gi|472268530|gb|KB716127.1| Leptonychotes weddellii isolate WS11... 41 0.015
gi|472267969|gb|KB716688.1| Leptonychotes weddellii isolate WS11... 35 0.63
gi|472268859|gb|KB715798.1| Leptonychotes weddellii isolate WS11... 34 1.8
gi|472268153|gb|KB716504.1| Leptonychotes weddellii isolate WS11... 32 7.0
gi|472268444|gb|KB716213.1| Leptonychotes weddellii isolate WS11... 32 7.0
gi|472268740|gb|KB715917.1| Leptonychotes weddellii isolate WS11... 32 7.0
gi|472269836|gb|KB714853.1| Leptonychotes weddellii isolate WS11... 32 7.0
gi|472269907|gb|KB714782.1| Leptonychotes weddellii isolate WS11... 32 7.0
gi|472265463|gb|KB719194.1| Leptonychotes weddellii isolate WS11... 32 9.1
gi|472265540|gb|KB719117.1| Leptonychotes weddellii isolate WS11... 32 9.1
>gi|472269976|gb|KB714713.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00007, whole genome
shotgun sequence
Length = 6702950
Score = 168 bits (426), Expect = 5e-41
Identities = 83/98 (84%), Positives = 89/98 (90%)
Frame = -3
Query: 25 ANGGEGMEEATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLL 84
A G + +E ATVVIEHCTS RVYGRNAAALSQALRLE PELPV+VNP KPRRGS EVTLL
Sbjct: 3686571 AGGRKAVEAATVVIEHCTS*RVYGRNAAALSQALRLETPELPVEVNPAKPRRGSLEVTLL 3686392
Query: 85 RPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKYLS 122
RPDGSS ELWTGI+KGPPRKLKFPEPQEVV+ELKK+LS
Sbjct: 3686391 RPDGSSVELWTGIQKGPPRKLKFPEPQEVVKELKKHLS 3686278
>gi|472269882|gb|KB714807.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00101, whole genome
shotgun sequence
Length = 2603626
Score = 130 bits (326), Expect = 2e-29
Identities = 73/120 (60%), Positives = 77/120 (64%), Gaps = 39/120 (32%)
Frame = -1
Query: 42 TSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSS----------- 90
TS RVYGRNAAALSQALRLE P+LPV+VNP KPRRGSFEVTLLRPDGSS
Sbjct: 750682 TS*RVYGRNAAALSQALRLETPDLPVEVNPAKPRRGSFEVTLLRPDGSSEWRPGSRREAL 750503
Query: 91 ----------------------------AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS 122
ELWTGIKKGPPRKLKFPEPQEVV+ELKK+LS
Sbjct: 750502 GSARGHLGIWGTCWCIPK*LRFLGLFPGVELWTGIKKGPPRKLKFPEPQEVVKELKKHLS 750323
>gi|472268530|gb|KB716127.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01421, whole genome
shotgun sequence
Length = 645381
Score = 40.8 bits (94), Expect = 0.015
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 4/37 (10%)
Frame = +3
Query: 89 SSAELWTGIKKGPP----RKLKFPEPQEVVEELKKYL 121
S +LW G++K PP K+KF EPQE+VEEL+K L
Sbjct: 366339 SCVQLWAGMEKRPPPHPQSKVKFSEPQEMVEELQKCL 366449
>gi|472267969|gb|KB716688.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01982, whole genome
shotgun sequence
Length = 484971
Score = 35.4 bits (80), Expect = 0.63
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -3
Query: 45 RVYGRNAAALSQALRLEAPELPVKVN-PTKPRRGSFEVT--LLRPDGSSAELWTGIKKGP 101
R A +L+ A P +P +V T+P GS LRP+G +W G GP
Sbjct: 161428 RTSSLRAGSLAWAAPPARPPVPREVTGKTEPPHGSGNEAGGSLRPEG*EVMVWLGGAVGP 161249
Query: 102 PRKLKFPEPQEVVEEL 117
KL+ P+P+ V+ L
Sbjct: 161248 LTKLRRPQPEGAVQSL 161201
>gi|472268859|gb|KB715798.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01092, whole genome
shotgun sequence
Length = 785425
Score = 33.9 bits (76), Expect = 1.8
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 71 PTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQEVVEELKKYL 121
P P+ E+ L +S+E+ IKK P+K KFP P + E K+L
Sbjct: 329045 PNLPKLNREEIQNLNRPITSSEIEAVIKKNSPQKTKFPRPDGLTGESTKHL 329197
>gi|472268153|gb|KB716504.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01798, whole genome
shotgun sequence
Length = 578535
Score = 32.0 bits (71), Expect = 7.0
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2
Query: 59 RLEAPELPVKVNPTKPRRGSFEV 81
R+ AP +PV+V+PT P RGS ++
Sbjct: 187499 RVPAPSVPVRVSPTSPARGSIQM 187431
>gi|472268444|gb|KB716213.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01507, whole genome
shotgun sequence
Length = 695951
Score = 32.0 bits (71), Expect = 7.0
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = -3
Query: 61 EAPELPVKVNPTKPRRGSFEVTLL 84
EAP++PV++ PT+P+ SF +++L
Sbjct: 570018 EAPQIPVRIRPTRPKSYSFLISVL 569947
>gi|472268740|gb|KB715917.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01211, whole genome
shotgun sequence
Length = 688821
Score = 32.0 bits (71), Expect = 7.0
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +1
Query: 38 IEHCTSURVYGRNAAALSQALRLEAPELPVK---VNPTKPRRGSFEVTLLRPDGSSAELW 94
++ C S R+ +AL L L + + NP + + F L+ DG+ A+ W
Sbjct: 546544 LQQCLSMEAAVRDLSALHNCLALRCFKRQIS*CISNPVRVAKI*FPCNFLKEDGNLAQAW 546723
Query: 95 TGIKKGPPRKLKFPEPQEVVEE 116
G K G +++P +E+ +E
Sbjct: 546724 IGTKAG---AMQWPGSREMRQE 546780
>gi|472269836|gb|KB714853.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00147, whole genome
shotgun sequence
Length = 2252916
Score = 32.0 bits (71), Expect = 7.0
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 62 APELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQE 112
+P P P+ P RG+ L R AELWT +G L+FP +
Sbjct: 1260925 SPRRPSTTGPSWPCRGTGAFWLGRRSSLRAELWTS*MQGSGEPLRFPSAHD 1260773
>gi|472269907|gb|KB714782.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00076, whole genome
shotgun sequence
Length = 2698772
Score = 32.0 bits (71), Expect = 7.0
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 60 LEAPELPVKVNPTKPRRGSFE--VTLLRPDGSSAELWTGIKKGPPR 103
L++P LP + + RG + VTL P G A LW GIKKGP R
Sbjct: 701487 LQSPHLPWAGSELQDPRGRTQGLVTLPVPTGKPA-LWWGIKKGPGR 701353
>gi|472265463|gb|KB719194.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold04488, whole genome
shotgun sequence
Length = 115397
Score = 31.6 bits (70), Expect = 9.1
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 54 LSQALRLEAP-ELPVKVNPTKPRRGSFEVTLLRPDGSSAELWTGIKKGPPRKLKFPEPQE 112
LS++ LEA P P K +G F+ L R DG + W G+ G PR+ P+P
Sbjct: 6066 LSKSEGLEAKLSCPSSSLPQKRNKGDFQNNL-RGDGGGRQPWDGLSLGRPRRP--PKPLG 5896
Query: 113 VVEE 116
+++E
Sbjct: 5895 LIKE 5884
>gi|472265540|gb|KB719117.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold04411, whole genome
shotgun sequence
Length = 123470
Score = 31.6 bits (70), Expect = 9.1
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = -2
Query: 51 AAALSQALRLEAPELPVKVNPTKPRRGS 78
AAA + A + EAP+LP NPTKP GS
Sbjct: 68101 AAAFTAAGKEEAPKLPNAENPTKPTGGS 68018
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.312 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 364,696,651
Number of Sequences: 16710
Number of extensions: 4916662
Number of successful extensions: 17286
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 369
Number of HSP's that attempted gapping in prelim test: 15464
Number of HSP's gapped (non-prelim): 4258
length of query: 122
length of database: 1,052,295,386
effective HSP length: 97
effective length of query: 25
effective length of database: 1,050,674,516
effective search space: 26266862900
effective search space used: 26266862900
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 70 (31.6 bits)