Command line: [exonerate -m p2g --showtargetgff -q SPS2.fa -t regio_SPS2.fa]
Hostname: [ws101068]
C4 Alignment:
------------
Query: SPP00000064_2.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Human (Homo sapiens)
Target: gi|472269029|gb|KB715628.1|:subseq(350000,550000) Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00922, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 2207
Query range: 0 -> 483
Target range: 119641 -> 121096
1 : MetAlaGluAlaSerAlaThrGlyAlaCysGlyGluAlaMetAlaAlaAlaGluGlyS : 20
||||||||||||:!!!.!|||! !||| !!||||||!.!:!!|||||||||||||||
MetAlaGluAlaAlaValThrValAlaGlyGlyGluValValAlaAlaAlaGluGly-
119642 : ATGGCGGAAGCCGCGGTGACGGTCGCCGGCGGCGAGGTGGTGGCGGCGGCGGAAGGC- : 119699
21 : erSerGlyProAlaGlyLeuThrLeuGlyArgSerPheSerAsnTyrArgProPheGl : 39
|||||| !!|||||||||:!!|||||||||.!!||||||!:!||||||||||||||
--SerGlySerAlaGlyLeuSerLeuGlyArgGlyPheSerSerTyrArgProPheGl
119700 : --TCGGGCTCCGCGGGCTTGTCTCTTGGCCGGGGCTTCTCGAGCTACCGGCCCTTCGA : 119753
40 : uProGlnAlaLeuGlyLeuSerProSerTrpArgLeuThrGlyPheSerGlyMetLys : 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
uProGlnAlaLeuGlyLeuSerProSerTrpArgLeuThrGlyPheSerGlyMetLys
119754 : GCCCCAGGCGCTGGGCCTCAGCCCGAGCTGGCGGCTGACCGGCTTCTCCGGCATGAAG : 119810
59 : GlyUnkGlyCysLysValProGlnGluAlaLeuLeuLysLeuLeuAlaGlyLeuThrA : 78
||| |||||||||||||||||||||.!!||||||||||||||||||||||||||||
Gly***GlyCysLysValProGlnGluThrLeuLeuLysLeuLeuAlaGlyLeuThrA
119811 : GGCTGAGGCTGCAAGGTCCCCCAGGAGACGCTGCTCAAACTCCTGGCGGGACTGACGC : 119870
79 : rgProAspValArgProPro<-><->LeuGlyArgGlyLeuValGlyGlyGlnGluGl : 95
|||||||||||||||||||| ||||||! !|||||||||||||||!!.|||||
rgProAspValArgProProLeuGlyLeuGlyLeuGlyLeuValGlyGlyHisGluGl
119871 : GGCCAGACGTGCGGCCCCCGCTGGGCCTGGGCCTGGGCCTGGTCGGAGGCCATGAAGA : 119927
96 : uAlaSerGlnGluAlaGlyLeuProAlaGlyAlaGlyProSerProThrPheProAla : 114
||||:!!||||||!.!||||||||||||||||||! !|||!:! !!||||||||||||
uAlaAlaGlnGluGlyGlyLeuProAlaGlyAlaGluProAsnAlaThrPheProAla
119928 : GGCGGCCCAGGAAGGCGGCCTGCCGGCCGGGGCCGAACCCAACGCCACCTTTCCAGCC : 119984
115 : LeuGlyIleGlyMetAspSerCysValIleProLeuArgHisGlyGlyLeuSerLeuV : 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LeuGlyIleGlyMetAspSerCysValIleProLeuArgHisGlyGlyLeuSerLeuV
119985 : CTGGGCATTGGGATGGACTCCTGCGTCATACCCCTGAGGCACGGGGGCCTGTCACTGG : 120044
135 : alGlnThrThrAspPhePheTyrProLeuValGluAspProTyrMetMetGlyArgIl : 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
alGlnThrThrAspPhePheTyrProLeuValGluAspProTyrMetMetGlyArgIl
120045 : TGCAGACCACGGACTTCTTTTACCCCTTGGTGGAAGATCCCTACATGATGGGGCGCAT : 120101
154 : eAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyIleThrGluCysAspAsn : 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
eAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyIleThrGluCysAspAsn
120102 : AGCGTGTGCCAACGTGCTGAGTGACCTCTACGCCATGGGCATTACTGAATGTGACAAC : 120158
173 : MetLeuMetLeuLeuSerValSerGlnSerMetSerGluGluGluArgGluLysValT : 192
|||||||||||||||||||||||||||||||||!!!||||||||||||||||||:!!|
MetLeuMetLeuLeuSerValSerGlnSerMetThrGluGluGluArgGluLysIleT
120159 : ATGTTGATGTTACTCAGCGTCAGCCAGAGTATGACTGAGGAGGAGCGAGAAAAGATAA : 120218
193 : hrProLeuMetValLysGlyPheArgAspAlaAlaGluGluGlyGlyThrAlaValTh : 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
hrProLeuMetValLysGlyPheArgAspAlaAlaGluGluGlyGlyThrAlaValTh
120219 : CACCACTCATGGTCAAAGGCTTTCGTGATGCCGCTGAGGAAGGAGGGACTGCAGTGAC : 120275
212 : rGlyGlyGlnThrValValAsnProTrpIleIleIleGlyGlyValAlaThrValVal : 230
||||||||||||||||||||||||||||||||||:!!|||||||||||||||||||||
rGlyGlyGlnThrValValAsnProTrpIleIleValGlyGlyValAlaThrValVal
120276 : TGGGGGACAAACGGTGGTAAACCCTTGGATTATCGTCGGTGGGGTTGCCACTGTGGTA : 120332
231 : CysGlnProAsnGluPheIleMetProAspSerAlaValValGlyAspValLeuValL : 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CysGlnProAsnGluPheIleMetProAspSerAlaValValGlyAspValLeuValL
120333 : TGTCAGCCAAATGAATTCATCATGCCCGACAGCGCAGTTGTTGGGGATGTGCTCGTGT : 120392
251 : euThrLysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAsnPr : 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
euThrLysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAsnPr
120393 : TAACCAAACCCTTAGGAACCCAAGTTGCTGTCAATGCCCACCAATGGCTGGATAATCC : 120449
270 : oGluArgTrpAsnLysValLysMetValValSerArgGluGluValGluLeuAlaTyr : 288
||||||||||||||||:!!!!.||||||||||||||||||||||||||||||||||||
oGluArgTrpAsnLysIleAsnMetValValSerArgGluGluValGluLeuAlaTyr
120450 : CGAGAGATGGAATAAAATAAATATGGTGGTCTCCAGAGAAGAAGTAGAGCTGGCTTAT : 120506
289 : GlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeuMetHisT : 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeuMetHisT
120507 : CAGGAAGCCATGTTCAACATGGCTACCCTAAACAGAACTGCTGCTGGATTAATGCACA : 120566
309 : hrPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisSerGl : 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
hrPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisSerGl
120567 : CATTTAATGCACACGCAGCCACAGATATCACAGGCTTTGGCATCCTAGGACACTCTCA : 120623
328 : nAsnLeuAlaLysGlnGlnArgAsnGluValSerPheValIleHisAsnLeuProIle : 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
nAsnLeuAlaLysGlnGlnArgAsnGluValSerPheValIleHisAsnLeuProIle
120624 : GAACCTTGCAAAACAACAAAGAAACGAGGTGTCCTTTGTCATTCATAATCTGCCAATT : 120680
347 : IleAlaLysMetAlaAlaValSerLysAlaSerGlyArgPheGlyLeuLeuGlnGlyT : 366
||||||||||||||||||:!!|||||||||||||||||||||||||||||||||||||
IleAlaLysMetAlaAlaIleSerLysAlaSerGlyArgPheGlyLeuLeuGlnGlyT
120681 : ATTGCCAAGATGGCTGCCATCAGCAAGGCCAGTGGGCGCTTTGGGCTCCTTCAGGGAA : 120740
367 : hrSerAlaGluThrSerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaAr : 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
hrSerAlaGluThrSerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaAr
120741 : CCTCAGCAGAAACTTCTGGGGGATTACTGATTTGTCTGCCAAGAGAACAGGCAGCTCG : 120797
386 : gPheCysSerGluIleLysSerSerLysTyrGlyGluGlyHisGlnAlaTrpIleVal : 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
gPheCysSerGluIleLysSerSerLysTyrGlyGluGlyHisGlnAlaTrpIleVal
120798 : CTTTTGTTCTGAAATCAAATCTTCCAAGTATGGAGAGGGTCACCAAGCATGGATCGTC : 120854
405 : GlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArgValIleG : 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArgValIleG
120855 : GGTATTGTGGAAAAGGGAAACCGGACAGCCCGGATCATTGACAAGCCTCGAGTTATTG : 120914
425 : luValLeuProArgGlyAlaThrAlaAlaValLeuAlaProAspSerSerAsnAlaSe : 443
|||||||||||||||||||||||||||||!.!||||||||||||!:!|||!:!|||||
luValLeuProArgGlyAlaThrAlaAlaAlaLeuAlaProAspAsnSerSerAlaSe
120915 : AGGTCCTACCTCGTGGGGCCACTGCTGCTGCTCTTGCTCCTGACAATTCCAGTGCCTC : 120971
444 : rSerGluProSerSerUnkAspGluArgThrGluValValTrpThrLeuGluProLeu : 462
|||||||||||||||| |||! !! !.!!|||||||||||||||||||||||||||
rSerGluProSerSer***AspGlyIleAlaGluValValTrpThrLeuGluProLeu
120972 : CTCTGAGCCTAGCTCGTGAGATGGAATAGCAGAAGTTGTTTGGACCTTAGAGCCTCTG : 121028
463 : SerThrIleThrAspGlySerGlnGluLeuIleVal<->ArgAsnPheGlnArgArgL : 481
! !||||||! !..!! !||||||.!.!!!|||:!! |||||||||||||||||||
TyrThrIleIleSerAspSerGlnAsnPheIleLeuArgArgAsnPheGlnArgArgL
121029 : TACACAATCATTAGCGATTCTCAGAACTTTATTTTAAGAAGAAATTTCCAAAGAAGGC : 121088
482 : euProAla : 483
|| !!|||
euSerAla
121089 : TGTCTGCA : 121096
vulgar: SPP00000064_2.0 0 483 . gi|472269029|gb|KB715628.1|:subseq(350000,550000) 119641 121096 + 2207 M 19 57 G 1 0 M 64 192 G 0 6 M 390 1170 G 0 3 M 9 27
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-07
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269029|gb|KB715628.1|:subseq(350000,550000) exonerate:protein2genome:local gene 119642 121096 2207 + . gene_id 1 ; sequence SPP00000064_2.0 ; gene_orientation .
gi|472269029|gb|KB715628.1|:subseq(350000,550000) exonerate:protein2genome:local cds 119642 121096 . + .
gi|472269029|gb|KB715628.1|:subseq(350000,550000) exonerate:protein2genome:local exon 119642 121096 . + . insertions 9 ; deletions 1
gi|472269029|gb|KB715628.1|:subseq(350000,550000) exonerate:protein2genome:local similarity 119642 121096 2207 + . alignment_id 1 ; Query SPP00000064_2.0 ; Align 119642 1 57 ; Align 119699 21 192 ; Align 119897 85 1170 ; Align 121070 475 27
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis