Command line: [exonerate -m p2g --showtargetgff -q SPS2.fa -t regio_SPS2.fa]
Hostname: [ws101068]

C4 Alignment:
------------
         Query: SPP00000064_2.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Human (Homo sapiens)
        Target: gi|472269029|gb|KB715628.1|:subseq(350000,550000) Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00922, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2207
   Query range: 0 -> 483
  Target range: 119641 -> 121096

      1 : MetAlaGluAlaSerAlaThrGlyAlaCysGlyGluAlaMetAlaAlaAlaGluGlyS :     20
          ||||||||||||:!!!.!|||! !||| !!||||||!.!:!!||||||||||||||| 
          MetAlaGluAlaAlaValThrValAlaGlyGlyGluValValAlaAlaAlaGluGly-
 119642 : ATGGCGGAAGCCGCGGTGACGGTCGCCGGCGGCGAGGTGGTGGCGGCGGCGGAAGGC- : 119699

     21 : erSerGlyProAlaGlyLeuThrLeuGlyArgSerPheSerAsnTyrArgProPheGl :     39
            |||||| !!|||||||||:!!|||||||||.!!||||||!:!||||||||||||||
          --SerGlySerAlaGlyLeuSerLeuGlyArgGlyPheSerSerTyrArgProPheGl
 119700 : --TCGGGCTCCGCGGGCTTGTCTCTTGGCCGGGGCTTCTCGAGCTACCGGCCCTTCGA : 119753

     40 : uProGlnAlaLeuGlyLeuSerProSerTrpArgLeuThrGlyPheSerGlyMetLys :     58
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uProGlnAlaLeuGlyLeuSerProSerTrpArgLeuThrGlyPheSerGlyMetLys
 119754 : GCCCCAGGCGCTGGGCCTCAGCCCGAGCTGGCGGCTGACCGGCTTCTCCGGCATGAAG : 119810

     59 : GlyUnkGlyCysLysValProGlnGluAlaLeuLeuLysLeuLeuAlaGlyLeuThrA :     78
          |||   |||||||||||||||||||||.!!||||||||||||||||||||||||||||
          Gly***GlyCysLysValProGlnGluThrLeuLeuLysLeuLeuAlaGlyLeuThrA
 119811 : GGCTGAGGCTGCAAGGTCCCCCAGGAGACGCTGCTCAAACTCCTGGCGGGACTGACGC : 119870

     79 : rgProAspValArgProPro<-><->LeuGlyArgGlyLeuValGlyGlyGlnGluGl :     95
          ||||||||||||||||||||      ||||||! !|||||||||||||||!!.|||||
          rgProAspValArgProProLeuGlyLeuGlyLeuGlyLeuValGlyGlyHisGluGl
 119871 : GGCCAGACGTGCGGCCCCCGCTGGGCCTGGGCCTGGGCCTGGTCGGAGGCCATGAAGA : 119927

     96 : uAlaSerGlnGluAlaGlyLeuProAlaGlyAlaGlyProSerProThrPheProAla :    114
          ||||:!!||||||!.!||||||||||||||||||! !|||!:! !!||||||||||||
          uAlaAlaGlnGluGlyGlyLeuProAlaGlyAlaGluProAsnAlaThrPheProAla
 119928 : GGCGGCCCAGGAAGGCGGCCTGCCGGCCGGGGCCGAACCCAACGCCACCTTTCCAGCC : 119984

    115 : LeuGlyIleGlyMetAspSerCysValIleProLeuArgHisGlyGlyLeuSerLeuV :    134
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          LeuGlyIleGlyMetAspSerCysValIleProLeuArgHisGlyGlyLeuSerLeuV
 119985 : CTGGGCATTGGGATGGACTCCTGCGTCATACCCCTGAGGCACGGGGGCCTGTCACTGG : 120044

    135 : alGlnThrThrAspPhePheTyrProLeuValGluAspProTyrMetMetGlyArgIl :    153
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alGlnThrThrAspPhePheTyrProLeuValGluAspProTyrMetMetGlyArgIl
 120045 : TGCAGACCACGGACTTCTTTTACCCCTTGGTGGAAGATCCCTACATGATGGGGCGCAT : 120101

    154 : eAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyIleThrGluCysAspAsn :    172
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          eAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyIleThrGluCysAspAsn
 120102 : AGCGTGTGCCAACGTGCTGAGTGACCTCTACGCCATGGGCATTACTGAATGTGACAAC : 120158

    173 : MetLeuMetLeuLeuSerValSerGlnSerMetSerGluGluGluArgGluLysValT :    192
          |||||||||||||||||||||||||||||||||!!!||||||||||||||||||:!!|
          MetLeuMetLeuLeuSerValSerGlnSerMetThrGluGluGluArgGluLysIleT
 120159 : ATGTTGATGTTACTCAGCGTCAGCCAGAGTATGACTGAGGAGGAGCGAGAAAAGATAA : 120218

    193 : hrProLeuMetValLysGlyPheArgAspAlaAlaGluGluGlyGlyThrAlaValTh :    211
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          hrProLeuMetValLysGlyPheArgAspAlaAlaGluGluGlyGlyThrAlaValTh
 120219 : CACCACTCATGGTCAAAGGCTTTCGTGATGCCGCTGAGGAAGGAGGGACTGCAGTGAC : 120275

    212 : rGlyGlyGlnThrValValAsnProTrpIleIleIleGlyGlyValAlaThrValVal :    230
          ||||||||||||||||||||||||||||||||||:!!|||||||||||||||||||||
          rGlyGlyGlnThrValValAsnProTrpIleIleValGlyGlyValAlaThrValVal
 120276 : TGGGGGACAAACGGTGGTAAACCCTTGGATTATCGTCGGTGGGGTTGCCACTGTGGTA : 120332

    231 : CysGlnProAsnGluPheIleMetProAspSerAlaValValGlyAspValLeuValL :    250
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          CysGlnProAsnGluPheIleMetProAspSerAlaValValGlyAspValLeuValL
 120333 : TGTCAGCCAAATGAATTCATCATGCCCGACAGCGCAGTTGTTGGGGATGTGCTCGTGT : 120392

    251 : euThrLysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAsnPr :    269
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          euThrLysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAsnPr
 120393 : TAACCAAACCCTTAGGAACCCAAGTTGCTGTCAATGCCCACCAATGGCTGGATAATCC : 120449

    270 : oGluArgTrpAsnLysValLysMetValValSerArgGluGluValGluLeuAlaTyr :    288
          ||||||||||||||||:!!!!.||||||||||||||||||||||||||||||||||||
          oGluArgTrpAsnLysIleAsnMetValValSerArgGluGluValGluLeuAlaTyr
 120450 : CGAGAGATGGAATAAAATAAATATGGTGGTCTCCAGAGAAGAAGTAGAGCTGGCTTAT : 120506

    289 : GlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeuMetHisT :    308
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeuMetHisT
 120507 : CAGGAAGCCATGTTCAACATGGCTACCCTAAACAGAACTGCTGCTGGATTAATGCACA : 120566

    309 : hrPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisSerGl :    327
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          hrPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisSerGl
 120567 : CATTTAATGCACACGCAGCCACAGATATCACAGGCTTTGGCATCCTAGGACACTCTCA : 120623

    328 : nAsnLeuAlaLysGlnGlnArgAsnGluValSerPheValIleHisAsnLeuProIle :    346
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          nAsnLeuAlaLysGlnGlnArgAsnGluValSerPheValIleHisAsnLeuProIle
 120624 : GAACCTTGCAAAACAACAAAGAAACGAGGTGTCCTTTGTCATTCATAATCTGCCAATT : 120680

    347 : IleAlaLysMetAlaAlaValSerLysAlaSerGlyArgPheGlyLeuLeuGlnGlyT :    366
          ||||||||||||||||||:!!|||||||||||||||||||||||||||||||||||||
          IleAlaLysMetAlaAlaIleSerLysAlaSerGlyArgPheGlyLeuLeuGlnGlyT
 120681 : ATTGCCAAGATGGCTGCCATCAGCAAGGCCAGTGGGCGCTTTGGGCTCCTTCAGGGAA : 120740

    367 : hrSerAlaGluThrSerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaAr :    385
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          hrSerAlaGluThrSerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaAr
 120741 : CCTCAGCAGAAACTTCTGGGGGATTACTGATTTGTCTGCCAAGAGAACAGGCAGCTCG : 120797

    386 : gPheCysSerGluIleLysSerSerLysTyrGlyGluGlyHisGlnAlaTrpIleVal :    404
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          gPheCysSerGluIleLysSerSerLysTyrGlyGluGlyHisGlnAlaTrpIleVal
 120798 : CTTTTGTTCTGAAATCAAATCTTCCAAGTATGGAGAGGGTCACCAAGCATGGATCGTC : 120854

    405 : GlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArgValIleG :    424
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArgValIleG
 120855 : GGTATTGTGGAAAAGGGAAACCGGACAGCCCGGATCATTGACAAGCCTCGAGTTATTG : 120914

    425 : luValLeuProArgGlyAlaThrAlaAlaValLeuAlaProAspSerSerAsnAlaSe :    443
          |||||||||||||||||||||||||||||!.!||||||||||||!:!|||!:!|||||
          luValLeuProArgGlyAlaThrAlaAlaAlaLeuAlaProAspAsnSerSerAlaSe
 120915 : AGGTCCTACCTCGTGGGGCCACTGCTGCTGCTCTTGCTCCTGACAATTCCAGTGCCTC : 120971

    444 : rSerGluProSerSerUnkAspGluArgThrGluValValTrpThrLeuGluProLeu :    462
          ||||||||||||||||   |||! !! !.!!|||||||||||||||||||||||||||
          rSerGluProSerSer***AspGlyIleAlaGluValValTrpThrLeuGluProLeu
 120972 : CTCTGAGCCTAGCTCGTGAGATGGAATAGCAGAAGTTGTTTGGACCTTAGAGCCTCTG : 121028

    463 : SerThrIleThrAspGlySerGlnGluLeuIleVal<->ArgAsnPheGlnArgArgL :    481
          ! !||||||! !..!! !||||||.!.!!!|||:!!   |||||||||||||||||||
          TyrThrIleIleSerAspSerGlnAsnPheIleLeuArgArgAsnPheGlnArgArgL
 121029 : TACACAATCATTAGCGATTCTCAGAACTTTATTTTAAGAAGAAATTTCCAAAGAAGGC : 121088

    482 : euProAla :    483
          || !!|||
          euSerAla
 121089 : TGTCTGCA : 121096

vulgar: SPP00000064_2.0 0 483 . gi|472269029|gb|KB715628.1|:subseq(350000,550000) 119641 121096 + 2207 M 19 57 G 1 0 M 64 192 G 0 6 M 390 1170 G 0 3 M 9 27
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-07
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269029|gb|KB715628.1|:subseq(350000,550000)	exonerate:protein2genome:local	gene	119642	121096	2207	+	.	gene_id 1 ; sequence SPP00000064_2.0 ; gene_orientation .
gi|472269029|gb|KB715628.1|:subseq(350000,550000)	exonerate:protein2genome:local	cds	119642	121096	.	+	.	
gi|472269029|gb|KB715628.1|:subseq(350000,550000)	exonerate:protein2genome:local	exon	119642	121096	.	+	.	insertions 9 ; deletions 1
gi|472269029|gb|KB715628.1|:subseq(350000,550000)	exonerate:protein2genome:local	similarity	119642	121096	2207	+	.	alignment_id 1 ; Query SPP00000064_2.0 ; Align 119642 1 57 ; Align 119699 21 192 ; Align 119897 85 1170 ; Align 121070 475 27
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis