TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000064_2.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Human (Homo sapiens)
(483 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472269029|gb|KB715628.1| Leptonychotes weddellii isolate WS11... 744 0.0
gi|472269736|gb|KB714953.1| Leptonychotes weddellii isolate WS11... 167 4e-68
gi|472269855|gb|KB714834.1| Leptonychotes weddellii isolate WS11... 124 2e-26
gi|472269647|gb|KB715042.1| Leptonychotes weddellii isolate WS11... 37 3.0
gi|472269897|gb|KB714792.1| Leptonychotes weddellii isolate WS11... 37 3.0
gi|472268182|gb|KB716475.1| Leptonychotes weddellii isolate WS11... 37 3.9
gi|472268794|gb|KB715863.1| Leptonychotes weddellii isolate WS11... 36 5.1
gi|472266711|gb|KB717946.1| Leptonychotes weddellii isolate WS11... 36 6.7
>gi|472269029|gb|KB715628.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00922, whole genome
shotgun sequence
Length = 925757
Score = 744 bits (1921), Expect = 0.0
Identities = 383/461 (83%), Positives = 392/461 (85%), Gaps = 3/461 (0%)
Frame = +1
Query: 26 LTLGRSFSNYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPL 85
L+LGR FS+YRPFEPQALGLSPSWRLTGFSGMKG GCKVPQE LLKLLAGLTRPDVRPPL
Sbjct: 469714 LSLGRGFSSYRPFEPQALGLSPSWRLTGFSGMKG*GCKVPQETLLKLLAGLTRPDVRPPL 469893
Query: 86 GRGL--VGGQEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPL 143
G GL VGG EEA+QE GLPAGA P+ TFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPL
Sbjct: 469894 GLGLGLVGGHEEAAQEGGLPAGAEPNATFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPL 470073
Query: 144 VEDPYMMGRIACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKGFRDXX 203
VEDPYMMGRIACANVLSDLYAMGITECDN REK+TPLMVKGFRD
Sbjct: 470074 VEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMTEEEREKITPLMVKGFRDAA 470253
Query: 204 XXXXXXXXXXXXXXNPWIIIGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAH 263
NPWII+GGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAH
Sbjct: 470254 EEGGTAVTGGQTVVNPWIIVGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAH 470433
Query: 264 QWLDNPERWNKVKMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGIL 323
QWLDNPERWNK+ MVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGIL
Sbjct: 470434 QWLDNPERWNKINMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGIL 470613
Query: 324 GHSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGRFGLLQGTSAETSGGLLICLPREQA 383
GHSQNLAKQQRNEVSFVIHNLPIIAKMAA+SKASGRFGLLQGTSAETSGGLLICLPREQA
Sbjct: 470614 GHSQNLAKQQRNEVSFVIHNLPIIAKMAAISKASGRFGLLQGTSAETSGGLLICLPREQA 470793
Query: 384 ARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAVLXXXXXXXX 443
ARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAA L
Sbjct: 470794 ARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAALAPDNSSAS 470973
Query: 444 XXXXXXXXRTEVVWTLEPLSTITDGSQELIV-RNFQRRLPA 483
EVVWTLEPL TI SQ I+ RNFQRRL A
Sbjct: 470974 SEPSS*DGIAEVVWTLEPLYTIISDSQNFILRRNFQRRLSA 471096
>gi|472269736|gb|KB714953.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00247, whole genome
shotgun sequence
Length = 1787195
Score = 167 bits (422), Expect(2) = 4e-68
Identities = 77/110 (70%), Positives = 95/110 (86%)
Frame = -3
Query: 221 IIIGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVS 280
+++GGVAT +CQP+EF+M D+ V GD+LVL K LGTQ+AV HQWLD PE+WNK+K VV+
Sbjct: 588036 VVLGGVATTLCQPSEFLMLDNVVPGDMLVLMKTLGTQMAVAVHQWLDIPEKWNKIKPVVT 587857
Query: 281 REEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNLA 330
+E+V+LAYQEAM NMA LNRTA+GLMH F+AH ATDIT FGILGH+QNLA
Sbjct: 587856 QEDVKLAYQEAMMNMAKLNRTASGLMHMFSAHTATDITSFGILGHAQNLA 587707
Score = 117 bits (293), Expect(2) = 4e-68
Identities = 53/87 (60%), Positives = 64/87 (73%)
Frame = -2
Query: 115 LGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNXX 174
LGIGMD+CVIPLRHG L LVQT D+ YP++ DPY+MGRIACANVLSDLY MG+ ECDN
Sbjct: 588352 LGIGMDTCVIPLRHGSLCLVQTMDYIYPIIGDPYVMGRIACANVLSDLYTMGVMECDNML 588173
Query: 175 XXXXXXXXXXXXXREKVTPLMVKGFRD 201
R+KV PL+++GF+D
Sbjct: 588172 MLFGISNKMTDRERDKVMPLIIQGFKD 588092
>gi|472269855|gb|KB714834.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00128, whole genome
shotgun sequence
Length = 2242837
Score = 124 bits (310), Expect = 2e-26
Identities = 62/72 (86%), Positives = 66/72 (91%), Gaps = 1/72 (1%)
Frame = -1
Query: 302 AAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGR-F 360
AAGLMHTFNAHAATDITGFGILGH+QNLAKQQRNEVSFVIHNLP++AKMAAVSKA G F
Sbjct: 875617 AAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMF 875438
Query: 361 GLLQGTSAETSG 372
GL+ GT ETSG
Sbjct: 875437 GLMHGTCPETSG 875402
Score = 114 bits (285), Expect = 1e-23
Identities = 54/63 (85%), Positives = 58/63 (92%)
Frame = -3
Query: 372 GGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGAT 431
GGLLICLPREQAARFC+EIKS KYGEGHQAWI+GIVEKGNRTARIIDKPR+IEV P+ AT
Sbjct: 873830 GGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVAT 873651
Query: 432 AAV 434
V
Sbjct: 873650 QNV 873642
Score = 78.6 bits (192), Expect = 9e-13
Identities = 43/81 (53%), Positives = 51/81 (62%)
Frame = -2
Query: 70 LKLLAGLTRPDVRPPLGRGLVGGQEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHG 129
+ LLAGL+ P P + L+ E P G TF GIGMD+CVIPLRHG
Sbjct: 894423 IALLAGLSAP*ASCP--KLLLFATLMV*NEMAFPFGFWTLTTFVFAGIGMDTCVIPLRHG 894250
Query: 130 GLSLVQTTDFFYPLVEDPYMM 150
GLSLVQTTD+ YP+V+DPYMM
Sbjct: 894249 GLSLVQTTDYIYPIVDDPYMM 894187
Score = 60.5 bits (145), Expect = 3e-07
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -3
Query: 269 PERWNKVKMVVSREEVELAYQEAMFNMATLNRTAAG 304
PE+WNK+K+VV++E+VELAYQEAM NMA LNRT G
Sbjct: 884480 PEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTGIG 884373
Score = 60.1 bits (144), Expect = 3e-07
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = -3
Query: 188 REKVTPLMVKGFRDXXXXXXXXXXXXXXXXNPWIIIGGVATVVCQPNEFIM 238
R+KV PL+++GF+D NPWI++GGVAT VCQPNEFIM
Sbjct: 890219 RDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIM 890067
Score = 56.2 bits (134), Expect = 5e-06
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = -3
Query: 236 FIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLD 267
F PD+AV GDVLVLTKPLGTQVAV HQWLD
Sbjct: 886592 FFRPDNAVPGDVLVLTKPLGTQVAVAVHQWLD 886497
Score = 51.6 bits (122), Expect = 1e-04
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = -2
Query: 147 PYMMGRIACANVLSDLYAMGITECDN 172
P GRIACANVLSDLYAMG+TECDN
Sbjct: 891216 PLFQGRIACANVLSDLYAMGVTECDN 891139
Score = 48.1 bits (113), Expect = 0.001
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = -3
Query: 30 RSFSNYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQEALLKLLAGL 76
R+ S F P++ L S+RLT F+ +KG GCKVPQ+ L KLL L
Sbjct: 899525 RTMSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESL 899385
>gi|472269647|gb|KB715042.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00336, whole genome
shotgun sequence
Length = 1460487
Score = 37.0 bits (84), Expect = 3.0
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Frame = -2
Query: 61 GCKVPQEALLKLLAGLTRPDVRPPLGRGLVG-------------GQEEASQEAGLPA--G 105
G +PQ+ L L T P RP G G G ++ QEA P G
Sbjct: 586802 GSFLPQDQLQLLSPSWTMPR-RPDSGHRKTGNRVC*GIWRRPEEGMDQPRQEADAPGLPG 586626
Query: 106 AGPSPTFPALGIGMDSCVIPLRHGGLSLVQT 136
+GP+ T P LG+G++ C+ G L T
Sbjct: 586625 SGPAVTMPCLGLGLEPCLFAPSRGRTDLPLT 586533
>gi|472269897|gb|KB714792.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00086, whole genome
shotgun sequence
Length = 2940345
Score = 37.0 bits (84), Expect = 3.0
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +1
Query: 319 GFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGRFGLLQGTSAETSGGLLICL 378
G G LGH +K +R E S ++++P IAKM AVS + L+ E S G+ +C
Sbjct: 2857678 GNGRLGHH---SKFRRYEPSSCLYSVPFIAKMLAVSGGKDQVHCLR----EDSLGITVCR 2857836
Query: 379 PREQAARFC 387
P++++ C
Sbjct: 2857837 PKKKSRVLC 2857863
>gi|472268182|gb|KB716475.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01769, whole genome
shotgun sequence
Length = 562350
Score = 36.6 bits (83), Expect = 3.9
Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 86 GRGLVGGQEEASQEAGLPAGAGPSPTFP---ALGIGMDSCVIPLRHGGLSLVQTTDFFYP 142
GRG VGG+ EAGLPA AGP PT A G G D C RH G+ +P
Sbjct: 201714 GRGGVGGR----LEAGLPARAGPHPTSQGPGARGHGADVC----RH*GMPRFSVNRTVFP 201869
Query: 143 LVEDPY 148
+ Y
Sbjct: 201870 MTRCKY 201887
>gi|472268794|gb|KB715863.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01157, whole genome
shotgun sequence
Length = 730242
Score = 36.2 bits (82), Expect = 5.1
Identities = 25/59 (42%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +3
Query: 37 PFEPQALGLSPSWR---LTGFSGMKGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGG 92
P+ P A S WR G G G P ALL LLA RP RPPL L+GG
Sbjct: 632532 PWAPPARDSSTWWRKCSAVGCGGSAGRSSAPP--ALLHLLAPSARPAARPPLQAALLGG 632702
>gi|472266711|gb|KB717946.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold03240, whole genome
shotgun sequence
Length = 251378
Score = 35.8 bits (81), Expect = 6.7
Identities = 21/41 (51%), Positives = 23/41 (56%)
Frame = -1
Query: 82 RPPLGRGLVGGQEEASQEAGLPAGAGPSPTFPALGIGMDSC 122
RPP RGL G E S G P GAG +PT PA G G+ C
Sbjct: 112646 RPP-ARGLKGTPNEMSSWEG-PQGAGEAPTLPAGGPGLGGC 112530
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,516,518,933
Number of Sequences: 16710
Number of extensions: 22468575
Number of successful extensions: 102769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 854
Number of HSP's that attempted gapping in prelim test: 93321
Number of HSP's gapped (non-prelim): 27604
length of query: 483
length of database: 1,052,295,386
effective HSP length: 136
effective length of query: 347
effective length of database: 1,050,022,826
effective search space: 364357920622
effective search space used: 364357920622
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)