Command line: [exonerate -m p2g --showtargetgff -q ./SPS1.fa -t SPS1.carpeta/genomic.fa] Hostname: [ws101071] C4 Alignment: ------------ Query: SPP00000060_2.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Human (Homo sapiens) Target: gi|472269029|gb|KB715628.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00922, whole genome shotgun sequence Model: protein2genome:local Raw score: 1073 Query range: 57 -> 310 Target range: 469968 -> 470937 58 : GlyAlaValMetProArgLeuGlyIleGlyMetAspThrCysValIleProLeuArgH : 77 ..!|||..!.!.||| !||||||||||||||||||:!!||||||||||||||||||| AsnAlaThrPheProAlaLeuGlyIleGlyMetAspSerCysValIleProLeuArgH 469969 : AACGCCACCTTTCCAGCCCTGGGCATTGGGATGGACTCCTGCGTCATACCCCTGAGGC : 470026 78 : isGlyGlyLeuSerLeuValGlnThrThrAspTyrIleTyrProIleValAspAspPr : 96 ||||||||||||||||||||||||||||||||!:!.!!||||||:!:|||!!:||||| isGlyGlyLeuSerLeuValGlnThrThrAspPhePheTyrProLeuValGluAspPr 470027 : ACGGGGGCCTGTCACTGGTGCAGACCACGGACTTCTTTTACCCCTTGGTGGAAGATCC : 470083 97 : oTyrMetMetGlyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGly : 115 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| oTyrMetMetGlyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGly 470084 : CTACATGATGGGGCGCATAGCGTGTGCCAACGTGCTGAGTGACCTCTACGCCATGGGC : 470140 116 : ValThrGluCysAspAsnMetLeuMetLeuLeuGlyValSerAsnLysMetThrAspA : 135 :!!||||||||||||||||||||||||||||||.!!||||||.!.!..||||||!!:. IleThrGluCysAspAsnMetLeuMetLeuLeuSerValSerGlnSerMetThrGluG 470141 : ATTACTGAATGTGACAACATGTTGATGTTACTCAGCGTCAGCCAGAGTATGACTGAGG : 470200 136 : rgGluArgAspLysValMetProLeuIleIleGlnGlyPheLysAspAlaAlaGluGl : 154 .!||||||!!:|||:!!! ||||||!!::!!:!!||||||:::|||||||||||||| luGluArgGluLysIleThrProLeuMetValLysGlyPheArgAspAlaAlaGluGl 470201 : AGGAGCGAGAAAAGATAACACCACTCATGGTCAAAGGCTTTCGTGATGCCGCTGAGGA : 470257 155 : uAlaGlyThrSerValThrGlyGlyGlnThrValLeuAsnProTrpIleValLeuGly : 173 |!.!||||||:!!|||||||||||||||||||||:!!||||||||||||:!!:!!||| uGlyGlyThrAlaValThrGlyGlyGlnThrValValAsnProTrpIleIleValGly 470258 : AGGAGGGACTGCAGTGACTGGGGGACAAACGGTGGTAAACCCTTGGATTATCGTCGGT : 470314 174 : GlyValAlaThrThrValCysGlnProAsnGluPheIleMetProAspAsnAlaValP : 193 ||||||||||||..!|||||||||||||||||||||||||||||||||!:!|||||| GlyValAlaThrValValCysGlnProAsnGluPheIleMetProAspSerAlaValV 470315 : GGGGTTGCCACTGTGGTATGTCAGCCAAATGAATTCATCATGCCCGACAGCGCAGTTG : 470374 194 : roGlyAspValLeuValLeuThrLysProLeuGlyThrGlnValAlaValAlaValHi : 212 !|||||||||||||||||||||||||||||||||||||||||||||||| !!.!|| alGlyAspValLeuValLeuThrLysProLeuGlyThrGlnValAlaValAsnAlaHi 470375 : TTGGGGATGTGCTCGTGTTAACCAAACCCTTAGGAACCCAAGTTGCTGTCAATGCCCA : 470431 213 : sGlnTrpLeuAspIleProGluLysTrpAsnLysIleLysLeuValValThrGlnGlu : 231 |||||||||||||! !||||||!:!||||||||||||!!.:!!||||||:!!::!||| sGlnTrpLeuAspAsnProGluArgTrpAsnLysIleAsnMetValValSerArgGlu 470432 : CCAATGGCTGGATAATCCCGAGAGATGGAATAAAATAAATATGGTGGTCTCCAGAGAA : 470488 232 : AspValGluLeuAlaTyrGlnGluAlaMetMetAsnMetAlaArgLeuAsnArgThr{ : 251 !!:|||||||||||||||||||||||||||.!.|||||||||! !||||||||||||{ GluValGluLeuAlaTyrGlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThr{ 470489 : GAAGTAGAGCTGGCTTATCAGGAAGCCATGTTCAACATGGCTACCCTAAACAGAACT{ : 470548 252 : G} >>>> Target Intron 1 >>>> {ly}GlyLeuLeuIleCysLeuProAr : 259 |} 210 bp {||}||||||||||||||||||||||| G}-+ -+{ly}GlyLeuLeuIleCysLeuProAr 470549 : G}ct.........................tg{GG}GGATTACTGATTTGTCTGCCAAG : 470782 260 : gGluGlnAlaAlaArgPheCysAlaGluIleLysSerProLysTyrGlyGluGlyHis : 278 ||||||||||||||||||||||:!!|||||||||||| !!|||||||||||||||||| gGluGlnAlaAlaArgPheCysSerGluIleLysSerSerLysTyrGlyGluGlyHis 470783 : AGAACAGGCAGCTCGCTTTTGTTCTGAAATCAAATCTTCCAAGTATGGAGAGGGTCAC : 470839 279 : GlnAlaTrpIleIleGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspL : 298 ||||||||||||:!!||||||||||||||||||||||||||||||||||||||||||| GlnAlaTrpIleValGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspL 470840 : CAAGCATGGATCGTCGGTATTGTGGAAAAGGGAAACCGGACAGCCCGGATCATTGACA : 470899 299 : ysProArgIleIleGluValAlaProGlnValAlaThr : 310 ||||||||:!!||||||||| !|||!::! !|||||| ysProArgValIleGluValLeuProArgGlyAlaThr 470900 : AGCCTCGAGTTATTGAGGTCCTACCTCGTGGGGCCACT : 470937 vulgar: SPP00000060_2.0 57 310 . gi|472269029|gb|KB715628.1| 469968 470937 + 1073 M 193 579 S 0 1 5 0 2 I 0 206 3 0 2 S 1 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2013-11-18 ##type DNA # # # seqname source feature start end score strand frame attributes # gi|472269029|gb|KB715628.1| exonerate:protein2genome:local gene 469969 470937 1073 + . gene_id 1 ; sequence SPP00000060_2.0 ; gene_orientation + gi|472269029|gb|KB715628.1| exonerate:protein2genome:local cds 469969 470548 . + . gi|472269029|gb|KB715628.1| exonerate:protein2genome:local exon 469969 470548 . + . insertions 0 ; deletions 0 gi|472269029|gb|KB715628.1| exonerate:protein2genome:local splice5 470549 470550 . + . intron_id 1 ; splice_site "CT" gi|472269029|gb|KB715628.1| exonerate:protein2genome:local intron 470549 470758 . + . intron_id 1 gi|472269029|gb|KB715628.1| exonerate:protein2genome:local splice3 470757 470758 . + . intron_id 0 ; splice_site "TG" gi|472269029|gb|KB715628.1| exonerate:protein2genome:local cds 470759 470937 . + . gi|472269029|gb|KB715628.1| exonerate:protein2genome:local exon 470759 470937 . + . insertions 0 ; deletions 0 gi|472269029|gb|KB715628.1| exonerate:protein2genome:local similarity 469969 470937 1073 + . alignment_id 1 ; Query SPP00000060_2.0 ; Align 469969 58 579 ; Align 470761 252 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000060_2.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Human (Homo sapiens) Target: gi|472269029|gb|KB715628.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00922, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 0 -> 45 Target range: 469731 -> 469866 1 : MetSerThrArgGluSerPheAsnProGluSerTyrGluLeuAspLysSerPheArgL : 20 .!.|||!:! !..! !!|||.!.|||:!!:!! ! |||..! !|||!::|||| PheSerSerTyrArgProPheGluProGlnAlaLeuGlyLeuSerProSerTrpArgL 469732 : TTCTCGAGCTACCGGCCCTTCGAGCCCCAGGCGCTGGGCCTCAGCCCGAGCTGGCGGC : 469789 21 : euThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGl : 39 ||||| !!|||:!!! :!!|||||| !||||||||||||||||||!!:..!|||! euThrGlyPheSerGlyMetLysGly***GlyCysLysValProGlnGluThrLeuLe 469790 : TGACCGGCTTCTCCGGCATGAAGGGCTGAGGCTGCAAGGTCCCCCAGGAGACGCTGCT : 469846 40 : nLysLeuLeuGluSerLeu : 45 |||||||||! !.!!||| uLysLeuLeuAlaGlyLeu 469847 : CAAACTCCTGGCGGGACTG : 469866 vulgar: SPP00000060_2.0 0 45 . gi|472269029|gb|KB715628.1| 469731 469866 + 105 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2013-11-18 ##type DNA # # # seqname source feature start end score strand frame attributes # gi|472269029|gb|KB715628.1| exonerate:protein2genome:local gene 469732 469866 105 + . gene_id 2 ; sequence SPP00000060_2.0 ; gene_orientation . gi|472269029|gb|KB715628.1| exonerate:protein2genome:local cds 469732 469866 . + . gi|472269029|gb|KB715628.1| exonerate:protein2genome:local exon 469732 469866 . + . insertions 0 ; deletions 0 gi|472269029|gb|KB715628.1| exonerate:protein2genome:local similarity 469732 469866 105 + . alignment_id 2 ; Query SPP00000060_2.0 ; Align 469732 1 135 # --- END OF GFF DUMP --- # -- completed exonerate analysis