Command line: [exonerate -m p2g --showtargetgff -q ./SPS1.fa -t SPS1.carpeta/genomic.fa]
Hostname: [ws101071]

C4 Alignment:
------------
         Query: SPP00000060_2.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Human (Homo sapiens)
        Target: gi|472269029|gb|KB715628.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00922, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1073
   Query range: 57 -> 310
  Target range: 469968 -> 470937

     58 : GlyAlaValMetProArgLeuGlyIleGlyMetAspThrCysValIleProLeuArgH :     77
          ..!|||..!.!.|||  !||||||||||||||||||:!!|||||||||||||||||||
          AsnAlaThrPheProAlaLeuGlyIleGlyMetAspSerCysValIleProLeuArgH
 469969 : AACGCCACCTTTCCAGCCCTGGGCATTGGGATGGACTCCTGCGTCATACCCCTGAGGC : 470026

     78 : isGlyGlyLeuSerLeuValGlnThrThrAspTyrIleTyrProIleValAspAspPr :     96
          ||||||||||||||||||||||||||||||||!:!.!!||||||:!:|||!!:|||||
          isGlyGlyLeuSerLeuValGlnThrThrAspPhePheTyrProLeuValGluAspPr
 470027 : ACGGGGGCCTGTCACTGGTGCAGACCACGGACTTCTTTTACCCCTTGGTGGAAGATCC : 470083

     97 : oTyrMetMetGlyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGly :    115
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          oTyrMetMetGlyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGly
 470084 : CTACATGATGGGGCGCATAGCGTGTGCCAACGTGCTGAGTGACCTCTACGCCATGGGC : 470140

    116 : ValThrGluCysAspAsnMetLeuMetLeuLeuGlyValSerAsnLysMetThrAspA :    135
          :!!||||||||||||||||||||||||||||||.!!||||||.!.!..||||||!!:.
          IleThrGluCysAspAsnMetLeuMetLeuLeuSerValSerGlnSerMetThrGluG
 470141 : ATTACTGAATGTGACAACATGTTGATGTTACTCAGCGTCAGCCAGAGTATGACTGAGG : 470200

    136 : rgGluArgAspLysValMetProLeuIleIleGlnGlyPheLysAspAlaAlaGluGl :    154
          .!||||||!!:|||:!!!  ||||||!!::!!:!!||||||:::||||||||||||||
          luGluArgGluLysIleThrProLeuMetValLysGlyPheArgAspAlaAlaGluGl
 470201 : AGGAGCGAGAAAAGATAACACCACTCATGGTCAAAGGCTTTCGTGATGCCGCTGAGGA : 470257

    155 : uAlaGlyThrSerValThrGlyGlyGlnThrValLeuAsnProTrpIleValLeuGly :    173
          |!.!||||||:!!|||||||||||||||||||||:!!||||||||||||:!!:!!|||
          uGlyGlyThrAlaValThrGlyGlyGlnThrValValAsnProTrpIleIleValGly
 470258 : AGGAGGGACTGCAGTGACTGGGGGACAAACGGTGGTAAACCCTTGGATTATCGTCGGT : 470314

    174 : GlyValAlaThrThrValCysGlnProAsnGluPheIleMetProAspAsnAlaValP :    193
          ||||||||||||..!|||||||||||||||||||||||||||||||||!:!|||||| 
          GlyValAlaThrValValCysGlnProAsnGluPheIleMetProAspSerAlaValV
 470315 : GGGGTTGCCACTGTGGTATGTCAGCCAAATGAATTCATCATGCCCGACAGCGCAGTTG : 470374

    194 : roGlyAspValLeuValLeuThrLysProLeuGlyThrGlnValAlaValAlaValHi :    212
           !||||||||||||||||||||||||||||||||||||||||||||||||  !!.!||
          alGlyAspValLeuValLeuThrLysProLeuGlyThrGlnValAlaValAsnAlaHi
 470375 : TTGGGGATGTGCTCGTGTTAACCAAACCCTTAGGAACCCAAGTTGCTGTCAATGCCCA : 470431

    213 : sGlnTrpLeuAspIleProGluLysTrpAsnLysIleLysLeuValValThrGlnGlu :    231
          |||||||||||||! !||||||!:!||||||||||||!!.:!!||||||:!!::!|||
          sGlnTrpLeuAspAsnProGluArgTrpAsnLysIleAsnMetValValSerArgGlu
 470432 : CCAATGGCTGGATAATCCCGAGAGATGGAATAAAATAAATATGGTGGTCTCCAGAGAA : 470488

    232 : AspValGluLeuAlaTyrGlnGluAlaMetMetAsnMetAlaArgLeuAsnArgThr{ :    251
          !!:|||||||||||||||||||||||||||.!.|||||||||! !||||||||||||{
          GluValGluLeuAlaTyrGlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThr{
 470489 : GAAGTAGAGCTGGCTTATCAGGAAGCCATGTTCAACATGGCTACCCTAAACAGAACT{ : 470548

    252 : G}  >>>> Target Intron 1 >>>>  {ly}GlyLeuLeuIleCysLeuProAr :    259
          |}            210 bp           {||}|||||||||||||||||||||||
          G}-+                         -+{ly}GlyLeuLeuIleCysLeuProAr
 470549 : G}ct.........................tg{GG}GGATTACTGATTTGTCTGCCAAG : 470782

    260 : gGluGlnAlaAlaArgPheCysAlaGluIleLysSerProLysTyrGlyGluGlyHis :    278
          ||||||||||||||||||||||:!!|||||||||||| !!||||||||||||||||||
          gGluGlnAlaAlaArgPheCysSerGluIleLysSerSerLysTyrGlyGluGlyHis
 470783 : AGAACAGGCAGCTCGCTTTTGTTCTGAAATCAAATCTTCCAAGTATGGAGAGGGTCAC : 470839

    279 : GlnAlaTrpIleIleGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspL :    298
          ||||||||||||:!!|||||||||||||||||||||||||||||||||||||||||||
          GlnAlaTrpIleValGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspL
 470840 : CAAGCATGGATCGTCGGTATTGTGGAAAAGGGAAACCGGACAGCCCGGATCATTGACA : 470899

    299 : ysProArgIleIleGluValAlaProGlnValAlaThr :    310
          ||||||||:!!|||||||||  !|||!::! !||||||
          ysProArgValIleGluValLeuProArgGlyAlaThr
 470900 : AGCCTCGAGTTATTGAGGTCCTACCTCGTGGGGCCACT : 470937

vulgar: SPP00000060_2.0 57 310 . gi|472269029|gb|KB715628.1| 469968 470937 + 1073 M 193 579 S 0 1 5 0 2 I 0 206 3 0 2 S 1 2 M 59 177
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269029|gb|KB715628.1|	exonerate:protein2genome:local	gene	469969	470937	1073	+	.	gene_id 1 ; sequence SPP00000060_2.0 ; gene_orientation +
gi|472269029|gb|KB715628.1|	exonerate:protein2genome:local	cds	469969	470548	.	+	.	
gi|472269029|gb|KB715628.1|	exonerate:protein2genome:local	exon	469969	470548	.	+	.	insertions 0 ; deletions 0
gi|472269029|gb|KB715628.1|	exonerate:protein2genome:local	splice5	470549	470550	.	+	.	intron_id 1 ; splice_site "CT"
gi|472269029|gb|KB715628.1|	exonerate:protein2genome:local	intron	470549	470758	.	+	.	intron_id 1
gi|472269029|gb|KB715628.1|	exonerate:protein2genome:local	splice3	470757	470758	.	+	.	intron_id 0 ; splice_site "TG"
gi|472269029|gb|KB715628.1|	exonerate:protein2genome:local	cds	470759	470937	.	+	.	
gi|472269029|gb|KB715628.1|	exonerate:protein2genome:local	exon	470759	470937	.	+	.	insertions 0 ; deletions 0
gi|472269029|gb|KB715628.1|	exonerate:protein2genome:local	similarity	469969	470937	1073	+	.	alignment_id 1 ; Query SPP00000060_2.0 ; Align 469969 58 579 ; Align 470761 252 177
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000060_2.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Human (Homo sapiens)
        Target: gi|472269029|gb|KB715628.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00922, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 105
   Query range: 0 -> 45
  Target range: 469731 -> 469866

      1 : MetSerThrArgGluSerPheAsnProGluSerTyrGluLeuAspLysSerPheArgL :     20
          .!.|||!:!  !..! !!|||.!.|||:!!:!!   !  |||..!  !|||!::||||
          PheSerSerTyrArgProPheGluProGlnAlaLeuGlyLeuSerProSerTrpArgL
 469732 : TTCTCGAGCTACCGGCCCTTCGAGCCCCAGGCGCTGGGCCTCAGCCCGAGCTGGCGGC : 469789

     21 : euThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGl :     39
          ||||| !!|||:!!!  :!!||||||  !||||||||||||||||||!!:..!|||! 
          euThrGlyPheSerGlyMetLysGly***GlyCysLysValProGlnGluThrLeuLe
 469790 : TGACCGGCTTCTCCGGCATGAAGGGCTGAGGCTGCAAGGTCCCCCAGGAGACGCTGCT : 469846

     40 : nLysLeuLeuGluSerLeu :     45
           |||||||||! !.!!|||
          uLysLeuLeuAlaGlyLeu
 469847 : CAAACTCCTGGCGGGACTG : 469866

vulgar: SPP00000060_2.0 0 45 . gi|472269029|gb|KB715628.1| 469731 469866 + 105 M 45 135
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269029|gb|KB715628.1|	exonerate:protein2genome:local	gene	469732	469866	105	+	.	gene_id 2 ; sequence SPP00000060_2.0 ; gene_orientation .
gi|472269029|gb|KB715628.1|	exonerate:protein2genome:local	cds	469732	469866	.	+	.	
gi|472269029|gb|KB715628.1|	exonerate:protein2genome:local	exon	469732	469866	.	+	.	insertions 0 ; deletions 0
gi|472269029|gb|KB715628.1|	exonerate:protein2genome:local	similarity	469732	469866	105	+	.	alignment_id 2 ; Query SPP00000060_2.0 ; Align 469732 1 135
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis