Command line: [exonerate -m p2g --showtargetgff -q ./tRNASec1.fa -t tRNASec1.carpeta/genomic.fa] Hostname: [ws116037] C4 Alignment: ------------ Query: SPP00000146_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Human (Homo sapiens) Target: gi|472269979|gb|KB714710.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00004, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 693 Query range: 40 -> 284 Target range: 4589028 -> 4588300 41 : ThrGlyIleProAlaGlyTyrCysPheValGluPheAlaAspLeuAlaThrAlaGl : 59 ||||||||||||||||||||||||! !||||||! ! !|||! !||||||||||| ThrGlyIleProAlaGlyTyrCysSerValGluCysIleAspTrpAlaThrAlaGl 4589028 : ACTGGCATCCCAGCTGGCTACTGCTCTGTAGAATGCATAGATTGGGCCACAGCTGA : 4588974 60 : uLysCysLeuHisLysIleAsnGlyLysProLeuProGlyAlaThrProAlaLysA : 78 |! ! !!|||||||||||||||||||||! !||||||||||||||||||||||||! uMetSerLeuHisLysIleAsnGlyLysHisLeuProGlyAlaThrProAlaLysH 4588973 : AATGAGCTTGCATAAAATTAATGGGAAACATCTTCCAGGAGCCACACCTGCAAAAC : 4588917 79 : rgPheLysLeuAsnTyrAlaThrTyrGlyLysGlnProAspAsnSerProGluTyr : 96 .!||||||:!!|||! !|||.!!||||||||| !!||||||||||||||| !||| isPheLysValAsnSerAlaAlaTyrGlyLys***ProAspAsnSerProMetTyr 4588916 : ATTTTAAAGTAAACTCTGCCGCTTATGGGAAATAACCAGATAATAGCCCCATGTAC : 4588863 97 : SerLeuPheValGly<->AspLeuThrProAspValAspAspGlyMetLeuTyr-- : 114 |||! !|||:!!||| ||||||||||||||||||! !||||||||||||## SerProPheLeuGlyArgArgLeuThrProAspValAspGlyGlyMetLeuTyr## 4588862 : TCCCCTTTTCTGGGCAGGAGGCTGACTCCAGATGTGGATGGTGGAATGTTGTATGG : 4588806 115 : GluPhePheValLysValTyrProSerCysArgGlyGlyLysValValLeuAspGl : 132 !!..!!|||!..:!!:!!||||||||| !!|||! !||||||||||||||||| ---LeuIleValSerIleHisProSerCysTrpGlyAspLysValValLeuAspGl 4588805 : ---TTGATTGTCAGCATCCACCCCTCCTGTTGGGGAGACAAGGTGGTCTTGGATCA : 4588753 133 : nThrGlyValSerLysGlyTyrGlyPheValLysPheThrAspGluLeuGluGlnL : 151 |||||||:!!|||||||||!:!||| !!:!!:!!! !! !||||||||||||!:!| nThrGlyMetSerLysGlyPheGlyValMetGluCysMetAspGluLeuGluArgL 4588752 : GACAGGTATGTCTAAGGGTTTTGGTGTTATGGAATGCATGGATGAACTGGAACGGA : 4588696 152 : ysArgAlaLeuThrGluCysGlnGlyAlaValGlyLeuGlySerLysProValArg : 169 ||!:!.!!||||||||||||||||||.!!||||||||||||||||||||||||! ! ysGlnThrLeuThrGluCysGlnGlyThrValGlyLeuGlySerLysProValLeu 4588695 : AGCAAACCCTGACAGAATGCCAGGGAACAGTGGGACTGGGGTCTAAACCAGTGCTT : 4588642 170 : LeuSerValAlaIleProLysAlaSerArgValLysProValGluTyrSerGlnMe : 188 ||||||:!!|||||| !!|||!.!|||! !||||||||||||||||||!:!||||| LeuSerMetAlaIleThrLysValSerProValLysProValGluTyrAsnGlnMe 4588641 : CTGAGCATGGCAATCACTAAAGTGAGCCCTGTGAAGCCAGTGGAATATAATCAGAT : 4588585 189 : tTyrSerTyrSerTyrAsnGlnTyrTyrGlnGlnTyrGlnAsnTyrTyrAlaGlnT : 207 |! !! !!! |||! ! !||| ! |||:!!||||||!:! ! !!.! !!| tCysIle***SerSerCysGln---LeuGlnGluTyrGlnSer---CysVal***T 4588584 : GTGCATTTAGAGCTCCTGCCAG---TTGCAGGAGTACCAGAGC---TGTGTCTAGT : 4588534 208 : rpGlyTyrAspGlnAsnThrGlySerTyrSerTyrSerTyrProGlnTyrGlyTyr : 225 || !!|||! ! !!|||||||||!:! !!!!!||||||||| !!! ! !!|||||| rpArgTyrGly***AsnThrGlyAsnAsnArgTyrSerTyrSerProAsnGlyTyr 4588533 : GGAGGTATGGCTAGAACACAGGCAACAACAGGTATAGTTACTCCCCAAATGGCTAT : 4588480 226 : ThrGlnSerThrMetGlnThrTyrGluGluValGlyAspAspAlaLeuGluAspPr : 244 !!|||||||||! ||||||!! ||||||!.!||||||:!!|||! !...:!!|| ProGlnSerThrThrGlnThr***GluGluAlaGlyAspAsnAlaProSerAsnPr 4588479 : CCCCAGAGCACGACACAGACATAGGAAGAAGCTGGAGATAATGCACCCAGTAACCC : 4588423 245 : oMetProGlnLeuAspValThrGluAlaAsnLysGluPheMetGluGlnSerGluG : 263 |! !|||||||||! !|||.!!|||||||||||||||||||||||||||!:!|||| oArgProGlnLeuGlyValAlaGluAlaAsnLysGluPheMetGluGlnAsnGluG 4588422 : CAGGCCACAACTGGGTGTGGCTGAGGCCAACAAGGAGTTCATGGAGCAGAATGAGG : 4588366 264 : luLeuTyrAspAlaLeuMetAspCysHisTrpGlnProLeuAspThrValSerSer : 281 |||||! !||||||||||||||||||! !||| !! !!||| !!! !||||||||| luLeuCysAspAlaLeuMetAspCysProTrp***SerLeuHisIleValSerSer 4588365 : AGCTGTGTGATGCACTCATGGACTGTCCCTGGTAGTCCCTGCACATTGTATCTTCA : 4588312 282 : GluIlePro : 284 |||! !||| GluSerPro 4588311 : GAGAGCCCA : 4588301 vulgar: SPP00000146_2.0 40 284 . gi|472269979|gb|KB714710.1| 4589028 4588300 - 693 M 61 183 G 0 3 M 12 36 F 0 2 G 1 0 M 81 243 G 1 0 M 6 18 G 1 0 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2013-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # gi|472269979|gb|KB714710.1| exonerate:protein2genome:local gene 4588301 4589028 693 - . gene_id 1 ; sequence SPP00000146_2.0 ; gene_orientation . gi|472269979|gb|KB714710.1| exonerate:protein2genome:local cds 4588301 4589028 . - . gi|472269979|gb|KB714710.1| exonerate:protein2genome:local exon 4588301 4589028 . - . insertions 3 ; deletions 3 ; frameshifts 2 gi|472269979|gb|KB714710.1| exonerate:protein2genome:local similarity 4588301 4589028 693 - . alignment_id 1 ; Query SPP00000146_2.0 ; Align 4589029 41 183 ; Align 4588843 102 36 ; Align 4588805 115 243 ; Align 4588562 197 18 ; Align 4588544 204 243 # --- END OF GFF DUMP --- # -- completed exonerate analysis