Command line: [exonerate -m p2g --showtargetgff -q ./tRNASec1.fa -t tRNASec1.carpeta/genomic.fa]
Hostname: [ws116037]

C4 Alignment:
------------
         Query: SPP00000146_2.0 # Protein # tRNA Sec 1 associated protein 1 (SECp43) # Human (Homo sapiens)
        Target: gi|472269979|gb|KB714710.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00004, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 693
   Query range: 40 -> 284
  Target range: 4589028 -> 4588300

      41 : ThrGlyIleProAlaGlyTyrCysPheValGluPheAlaAspLeuAlaThrAlaGl :      59
           ||||||||||||||||||||||||! !||||||! !  !|||! !|||||||||||
           ThrGlyIleProAlaGlyTyrCysSerValGluCysIleAspTrpAlaThrAlaGl
 4589028 : ACTGGCATCCCAGCTGGCTACTGCTCTGTAGAATGCATAGATTGGGCCACAGCTGA : 4588974

      60 : uLysCysLeuHisLysIleAsnGlyLysProLeuProGlyAlaThrProAlaLysA :      78
           |! ! !!|||||||||||||||||||||! !||||||||||||||||||||||||!
           uMetSerLeuHisLysIleAsnGlyLysHisLeuProGlyAlaThrProAlaLysH
 4588973 : AATGAGCTTGCATAAAATTAATGGGAAACATCTTCCAGGAGCCACACCTGCAAAAC : 4588917

      79 : rgPheLysLeuAsnTyrAlaThrTyrGlyLysGlnProAspAsnSerProGluTyr :      96
           .!||||||:!!|||! !|||.!!||||||||| !!|||||||||||||||  !|||
           isPheLysValAsnSerAlaAlaTyrGlyLys***ProAspAsnSerProMetTyr
 4588916 : ATTTTAAAGTAAACTCTGCCGCTTATGGGAAATAACCAGATAATAGCCCCATGTAC : 4588863

      97 : SerLeuPheValGly<->AspLeuThrProAspValAspAspGlyMetLeuTyr-- :     114
           |||! !|||:!!|||      ||||||||||||||||||! !||||||||||||##
           SerProPheLeuGlyArgArgLeuThrProAspValAspGlyGlyMetLeuTyr##
 4588862 : TCCCCTTTTCTGGGCAGGAGGCTGACTCCAGATGTGGATGGTGGAATGTTGTATGG : 4588806

     115 : GluPhePheValLysValTyrProSerCysArgGlyGlyLysValValLeuAspGl :     132
              !!..!!|||!..:!!:!!||||||||| !!|||! !|||||||||||||||||
           ---LeuIleValSerIleHisProSerCysTrpGlyAspLysValValLeuAspGl
 4588805 : ---TTGATTGTCAGCATCCACCCCTCCTGTTGGGGAGACAAGGTGGTCTTGGATCA : 4588753

     133 : nThrGlyValSerLysGlyTyrGlyPheValLysPheThrAspGluLeuGluGlnL :     151
           |||||||:!!|||||||||!:!||| !!:!!:!!! !! !||||||||||||!:!|
           nThrGlyMetSerLysGlyPheGlyValMetGluCysMetAspGluLeuGluArgL
 4588752 : GACAGGTATGTCTAAGGGTTTTGGTGTTATGGAATGCATGGATGAACTGGAACGGA : 4588696

     152 : ysArgAlaLeuThrGluCysGlnGlyAlaValGlyLeuGlySerLysProValArg :     169
           ||!:!.!!||||||||||||||||||.!!||||||||||||||||||||||||! !
           ysGlnThrLeuThrGluCysGlnGlyThrValGlyLeuGlySerLysProValLeu
 4588695 : AGCAAACCCTGACAGAATGCCAGGGAACAGTGGGACTGGGGTCTAAACCAGTGCTT : 4588642

     170 : LeuSerValAlaIleProLysAlaSerArgValLysProValGluTyrSerGlnMe :     188
           ||||||:!!|||||| !!|||!.!|||! !||||||||||||||||||!:!|||||
           LeuSerMetAlaIleThrLysValSerProValLysProValGluTyrAsnGlnMe
 4588641 : CTGAGCATGGCAATCACTAAAGTGAGCCCTGTGAAGCCAGTGGAATATAATCAGAT : 4588585

     189 : tTyrSerTyrSerTyrAsnGlnTyrTyrGlnGlnTyrGlnAsnTyrTyrAlaGlnT :     207
           |! !! !!! |||! !  !|||   !  |||:!!||||||!:!   ! !!.! !!|
           tCysIle***SerSerCysGln---LeuGlnGluTyrGlnSer---CysVal***T
 4588584 : GTGCATTTAGAGCTCCTGCCAG---TTGCAGGAGTACCAGAGC---TGTGTCTAGT : 4588534

     208 : rpGlyTyrAspGlnAsnThrGlySerTyrSerTyrSerTyrProGlnTyrGlyTyr :     225
           || !!|||! ! !!|||||||||!:! !!!!!||||||||| !!! ! !!||||||
           rpArgTyrGly***AsnThrGlyAsnAsnArgTyrSerTyrSerProAsnGlyTyr
 4588533 : GGAGGTATGGCTAGAACACAGGCAACAACAGGTATAGTTACTCCCCAAATGGCTAT : 4588480

     226 : ThrGlnSerThrMetGlnThrTyrGluGluValGlyAspAspAlaLeuGluAspPr :     244
            !!|||||||||!  ||||||!! ||||||!.!||||||:!!|||! !...:!!||
           ProGlnSerThrThrGlnThr***GluGluAlaGlyAspAsnAlaProSerAsnPr
 4588479 : CCCCAGAGCACGACACAGACATAGGAAGAAGCTGGAGATAATGCACCCAGTAACCC : 4588423

     245 : oMetProGlnLeuAspValThrGluAlaAsnLysGluPheMetGluGlnSerGluG :     263
           |! !|||||||||! !|||.!!|||||||||||||||||||||||||||!:!||||
           oArgProGlnLeuGlyValAlaGluAlaAsnLysGluPheMetGluGlnAsnGluG
 4588422 : CAGGCCACAACTGGGTGTGGCTGAGGCCAACAAGGAGTTCATGGAGCAGAATGAGG : 4588366

     264 : luLeuTyrAspAlaLeuMetAspCysHisTrpGlnProLeuAspThrValSerSer :     281
           |||||! !||||||||||||||||||! !||| !! !!||| !!! !|||||||||
           luLeuCysAspAlaLeuMetAspCysProTrp***SerLeuHisIleValSerSer
 4588365 : AGCTGTGTGATGCACTCATGGACTGTCCCTGGTAGTCCCTGCACATTGTATCTTCA : 4588312

     282 : GluIlePro :     284
           |||! !|||
           GluSerPro
 4588311 : GAGAGCCCA : 4588301

vulgar: SPP00000146_2.0 40 284 . gi|472269979|gb|KB714710.1| 4589028 4588300 - 693 M 61 183 G 0 3 M 12 36 F 0 2 G 1 0 M 81 243 G 1 0 M 6 18 G 1 0 M 81 243
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269979|gb|KB714710.1|	exonerate:protein2genome:local	gene	4588301	4589028	693	-	.	gene_id 1 ; sequence SPP00000146_2.0 ; gene_orientation .
gi|472269979|gb|KB714710.1|	exonerate:protein2genome:local	cds	4588301	4589028	.	-	.	
gi|472269979|gb|KB714710.1|	exonerate:protein2genome:local	exon	4588301	4589028	.	-	.	insertions 3 ; deletions 3 ; frameshifts 2
gi|472269979|gb|KB714710.1|	exonerate:protein2genome:local	similarity	4588301	4589028	693	-	.	alignment_id 1 ; Query SPP00000146_2.0 ; Align 4589029 41 183 ; Align 4588843 102 36 ; Align 4588805 115 243 ; Align 4588562 197 18 ; Align 4588544 204 243
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis