Command line: [exonerate -m p2g --showtargetgff -q ./SBP2.fa -t SBP2.carpeta/genomic.fa]
Hostname: [ws101071]
C4 Alignment:
------------
Query: SPP00000054_2.0 # Protein # SECIS binding protein 2 (SBP2) # Human (Homo sapiens)
Target: gi|472267807|gb|KB716850.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold02144, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 1309
Query range: 473 -> 840
Target range: 336473 -> 365899
474 : ProValValValSerValGlyAlaValProValLeuSerLysGluCysAlaSerGlyG : 493
|||:!! !|||:!!||||||||||||||||||||||||!:!!!: !|||||||||:
ProLeuArgValAlaValGlyAlaValProValLeuSerArgAspThrAlaSerGlyL
336474 : CCCCTCCGTGTCGCAGTCGGGGCGGTGCCGGTCCTCTCCAGAGACACCGCGTCGGGGA : 336531
494 : luArgGlyArgArgMetSerGlnMetLysThrProHisAsnProLeuAspSerSerAl : 512
!!!:!|||!.!!.!:!!||||||:!!||||||||||||||||||||||||||||||||
ysLysGlyHisHisLeuSerGlnValLysThrProHisAsnProLeuAspSerSerAl
336532 : AGAAGGGCCACCACTTGAGCCAGGTGAAGACCCCGCACAACCCCTTGGACTCCAGCGC : 336588
513 : aProLeuMetLysLysGlyLysGlnArgGluIleProLysAlaLysLysProThrSer : 531
|||||||||||||||||||||||||||||||:!!||||||||||||||||||||||||
aProLeuMetLysLysGlyLysGlnArgGluValProLysAlaLysLysProThrSer
336589 : CCCACTGATGAAGAAGGGGAAGCAGAGGGAGGTCCCCAAGGCCAAGAAGCCAACCTCG : 336645
532 : LeuLysLys >>>> Target Intron 1 >>>> IleIleLeuLysGluArgGl : 541
||||||||| 570 bp ||||||||||||||||||||
LeuLysLys++ ++IleIleLeuLysGluArgGl
336646 : TTGAAGAAGgt.........................agATTATTCTGAAAGAACGGCA : 337245
542 : nGluArgLys<->GlnArgLeuGlnGluAsnAlaValSerProAlaPheThrSerAsp : 559
|||||||||| |||||||||||||||||||||||||||||||||.!!.!!||||||
nGluArgLysGlnGlnArgLeuGlnGluAsnAlaValSerProAlaLeuAlaSerAsp
337246 : GGAGAGAAAGCAGCAGCGTCTCCAAGAAAATGCCGTGAGCCCAGCTCTCGCCAGTGAT : 337302
560 : AspThrGlnAspGlyGluSerGlyGlyAspAspGlnPheProGluGlnAlaGluLeu{ : 579
! !..!! !|||||||||||||||||||||!!: .!! ! ! ! ! ! !{
AlaValProAspGlyGluSerGlyGlyAspGluAlaLeuGluProAlaAspProSer{
337303 : GCTGTACCGGATGGTGAGAGCGGTGGTGACGAGGCCCTCGAGCCGGCCGACCCCTCA{ : 337362
580 : S} >>>> Target Intron 2 >>>> {er}GlyProGluGlyMetAspGluLe : 587
.} 586 bp {!!}|||||||||!.! !
G}++ ++{ly}GlyProGluAlaSerPro-----
337363 : G}gt.........................ag{GA}GGGCCGGAGGCGTCGCCG----- : 337969
588 : uIleSerThrProSerValGluAspLysSerGluGluProProGlyThrGluLeuGln : 606
!|||.!!|||! !:!!|||! !!:!|||||||||! !||| !!.!!|||||||||
-CysSerAlaProMetLeuGluGlyArgSerGluGluLeuProArgAlaGluLeuGln
337970 : -TGCTCTGCGCCCATGCTGGAGGGCAGGTCAGAAGAGCTGCCGAGAGCGGAGCTCCAG : 338023
607 : ArgAspThrGluAlaSerHisLeuAlaProAsnHisThrThrPheProLysIleHisS : 626
!:!!!:..!|||!.!!!!||||||!.!|||||| !.!! !! !|||||||||||||
LysGluValGluGlyCysHisLeuValProAsnGlyAlaGlyCysProLysIleHisS
338024 : AAGGAGGTAGAGGGCTGCCACCTCGTTCCCAACGGCGCTGGCTGCCCCAAGATCCACA : 338083
627 : erArgArgPheArg{As} >>>> Target Intron 3 >>>> {p}TyrCysSe : 634
||||||||||||||{||} 510 bp {|}||||||||
erArgArgPheArg{As}++ ++{p}TyrCysSe
338084 : GCCGGAGATTCCGG{GA}gt.........................ag{T}TACTGCAG : 338617
635 : rGlnMetLeuSerLysGluValAspAlaCysValThrAspLeuLeuLysGluLeuVal : 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rGlnMetLeuSerLysGluValAspAlaCysValThrAspLeuLeuLysGluLeuVal
338618 : CCAGATGCTGAGTAAGGAGGTGGACGCCTGTGTGACGGATCTGCTGAAGGAGCTGGTG : 338674
654 : ArgPheGlnAspArgMetTyrGlnLysAspProValLysAlaLysThrLysArgArgL : 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ArgPheGlnAspArgMetTyrGlnLysAspProValLysAlaLysThrLysArgArgL
338675 : CGCTTCCAAGACCGCATGTACCAGAAAGATCCAGTCAAGGCTAAGACCAAACGCCGAC : 338734
674 : euValLeuGlyLeuArgGluValLeuLysHisLeuLysLeuLysLysLeuLysCysVa : 692
|||||||||||||||||||||||||||||||||||||||||!:!||||||||||||:!
euValLeuGlyLeuArgGluValLeuLysHisLeuLysLeuArgLysLeuLysCysIl
338735 : TCGTGCTGGGGCTGCGGGAGGTCCTCAAGCATCTGAAGCTCAGGAAACTCAAGTGCAT : 338791
693 : lIleIleSerProAsnCysGluLysIleGlnSerLys{G} >>>> Target Intr : 705
!||||||||||||||||||||||||||||||||||||{|} 5346 bp
eIleIleSerProAsnCysGluLysIleGlnSerLys{G}++
338792 : CATCATCTCTCCCAACTGTGAGAAGATCCAGTCGAAA{G}gt................ : 338833
706 : on 4 >>>> {ly}GlyLeuAspAspThrLeuHisThrIleIleAspTyrAlaCysG : 720
{||}|||||||||||||||||||||||||||||||||||||||||||
++{ly}GlyLeuAspAspThrLeuHisThrIleIleAspTyrAlaCysG
338834 : .........ag{GT}GGGCTGGACGACACGCTGCACACCATCATCGATTACGCCTGTG : 344221
721 : luGlnAsnIleProPheValPheAlaLeuAsnArgLysAlaLeuGlyArgSerLeuAs : 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
luGlnAsnIleProPheValPheAlaLeuAsnArgLysAlaLeuGlyArgSerLeuAs
344222 : AGCAGAATATTCCCTTCGTGTTCGCGCTCAACCGCAAAGCTCTGGGGCGCAGTTTGAA : 344278
740 : nLysAlaValProValSerValValGlyIlePheSerTyrAspGlyAlaGln >>>> : 757
||||||||||||||||||||||||||||||||||||||||||||||||||||
nLysAlaValProValSerValValGlyIlePheSerTyrAspGlyAlaGln++
344279 : CAAGGCCGTTCCCGTCAGCGTGGTGGGCATCTTCAGCTACGACGGGGCCCAGgt.... : 344334
758 : Target Intron 5 >>>> AspGlnPheHisLysMetValGluLeuThrValAl : 768
146 bp ||||||||||||!:!|||||||||||||||:!!||
++AspGlnPheHisArgMetValGluLeuThrMetAl
344335 : .....................agGACCAGTTCCACAGGATGGTCGAGCTGACGATGGC : 344511
769 : aAlaArgGlnAlaTyrLysThrMetLeuGluAsnValGlnGlnGluLeuValGlyGlu : 787
|||||||||||||||||||!:!|||||||||||||||!::!:!||||||!.!||||||
aAlaArgGlnAlaTyrLysSerMetLeuGluAsnValArgArgGluLeuAlaGlyGlu
344512 : CGCCCGGCAGGCGTACAAGAGCATGCTGGAGAACGTGCGCCGGGAGCTGGCTGGGGAG : 344568
788 : ProArgProGlnAlaProProSerLeuProThrGlnGlyProSerCysProAlaGluA : 807
||| !!|||! !|||||| !!|||! !|||..!|||||||||.!! !! !!|||:!!|
ProGlyProProAlaProAlaSerProProValGlnGlyProGlyGlySerAlaGlnA
344569 : CCTGGGCCCCCGGCTCCGGCCAGCCCGCCCGTGCAGGGCCCCGGCGGCTCGGCGCAGG : 344628
808 : spGlyProProAla<->LeuLysGluLysGluGluProHisTyrIleGluIleTrpLy : 825
|||||||||||||| ! ! !!..|||||||||:!!|||! !||| !|||
spGlyProProAlaProAlaProGlySerGluGluProTyrTyrSerGluCysTrpGl
344629 : ACGGCCCCCCTGCCCCTGCACCCGGGAGCGAAGAGCCTTACTACAGTGAGTGCTGGGG : 344685
826 : s{L} >>>> Target Intron 6 >>>> {ys}HisLeuGluAlaTyrSerGly : 833
!{ } 21167 bp { !}|||:!!|||.!! !!:!!! !
y{G}+- ++{ly}HisValGluThrAspAlaVal
344686 : A{G}gg.........................ag{GA}CACGTAGAAACTGATGCAGTC : 365876
834 : CysThrLeuGluLeuGluGlu : 840
||||||||||||:!!|||:!!
CysThrLeuGluValGluLys
365877 : TGCACTTTGGAGGTGGAAAAG : 365899
vulgar: SPP00000054_2.0 473 840 . gi|472267807|gb|KB716850.1| 336473 365899 + 1309 M 61 183 5 0 2 I 0 566 3 0 2 M 10 30 G 0 3 M 34 102 S 0 1 5 0 2 I 0 582 3 0 2 S 1 2 M 6 18 G 2 0 M 43 129 S 0 2 5 0 2 I 0 506 3 0 2 S 1 1 M 73 219 S 0 1 5 0 2 I 0 5342 3 0 2 S 1 2 M 51 153 5 0 2 I 0 142 3 0 2 M 55 165 G 0 3 M 14 42 S 0 1 5 0 2 I 0 21163 3 0 2 S 1 2 M 14 42
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local gene 336474 365899 1309 + . gene_id 1 ; sequence SPP00000054_2.0 ; gene_orientation +
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local cds 336474 336656 . + .
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local exon 336474 336656 . + . insertions 0 ; deletions 0
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local splice5 336657 336658 . + . intron_id 1 ; splice_site "GT"
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local intron 336657 337226 . + . intron_id 1
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local splice3 337225 337226 . + . intron_id 0 ; splice_site "AG"
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local cds 337227 337362 . + .
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local exon 337227 337362 . + . insertions 3 ; deletions 0
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local splice5 337363 337364 . + . intron_id 2 ; splice_site "GT"
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local intron 337363 337948 . + . intron_id 2
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local splice3 337947 337948 . + . intron_id 1 ; splice_site "AG"
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local cds 337949 338099 . + .
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local exon 337949 338099 . + . insertions 0 ; deletions 2
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local splice5 338100 338101 . + . intron_id 3 ; splice_site "GT"
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local intron 338100 338609 . + . intron_id 3
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local splice3 338608 338609 . + . intron_id 2 ; splice_site "AG"
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local cds 338610 338830 . + .
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local exon 338610 338830 . + . insertions 0 ; deletions 0
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local splice5 338831 338832 . + . intron_id 4 ; splice_site "GT"
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local intron 338831 344176 . + . intron_id 4
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local splice3 344175 344176 . + . intron_id 3 ; splice_site "AG"
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local cds 344177 344331 . + .
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local exon 344177 344331 . + . insertions 0 ; deletions 0
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local splice5 344332 344333 . + . intron_id 5 ; splice_site "GT"
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local intron 344332 344477 . + . intron_id 5
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local splice3 344476 344477 . + . intron_id 4 ; splice_site "AG"
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local cds 344478 344688 . + .
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local exon 344478 344688 . + . insertions 3 ; deletions 0
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local splice5 344689 344690 . + . intron_id 6 ; splice_site "GG"
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local intron 344689 365855 . + . intron_id 6
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local splice3 365854 365855 . + . intron_id 5 ; splice_site "AG"
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local cds 365856 365899 . + .
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local exon 365856 365899 . + . insertions 0 ; deletions 0
gi|472267807|gb|KB716850.1| exonerate:protein2genome:local similarity 336474 365899 1309 + . alignment_id 1 ; Query SPP00000054_2.0 ; Align 336474 474 183 ; Align 337227 535 30 ; Align 337260 545 102 ; Align 337951 580 18 ; Align 337969 588 129 ; Align 338611 632 219 ; Align 344179 706 153 ; Align 344478 757 165 ; Align 344646 812 42 ; Align 365858 827 42
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis