TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000054_2.0 # Protein # SECIS binding protein 2 (SBP2) #
Human (Homo sapiens)
(854 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472267807|gb|KB716850.1| Leptonychotes weddellii isolate WS11... 127 5e-27
gi|472267499|gb|KB717158.1| Leptonychotes weddellii isolate WS11... 112 2e-22
gi|472269286|gb|KB715371.1| Leptonychotes weddellii isolate WS11... 104 2e-20
gi|472267563|gb|KB717094.1| Leptonychotes weddellii isolate WS11... 37 8.1
gi|472269699|gb|KB714990.1| Leptonychotes weddellii isolate WS11... 37 8.1
>gi|472267807|gb|KB716850.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02144, whole genome
shotgun sequence
Length = 429869
Score = 127 bits (318), Expect = 5e-27
Identities = 63/74 (85%), Positives = 64/74 (86%)
Frame = +1
Query: 632 YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVXXXXXXXXXXC 691
YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREV C
Sbjct: 338611 YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLRKLKC 338790
Query: 692 VIISPNCEKIQSKG 705
+IISPNCEKIQSKG
Sbjct: 338791 IIISPNCEKIQSKG 338832
Score = 107 bits (268), Expect = 3e-21
Identities = 52/52 (100%), Positives = 52/52 (100%)
Frame = +1
Query: 705 GGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ 756
GGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ
Sbjct: 344176 GGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ 344331
Score = 97.8 bits (242), Expect = 3e-18
Identities = 53/98 (54%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Frame = +3
Query: 728 ALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVELTVAARQAYKTMLENVQQELVGE 787
AL+ A G + +P V QDQFH+MVELT+AARQAYK+MLENV++EL GE
Sbjct: 344391 ALSLGAAGWKAGRRIPWGRVSPVRSLLPQDQFHRMVELTMAARQAYKSMLENVRRELAGE 344570
Query: 788 PRPQAPPSLPTQGPSCPAEDGPPA-LKEKEEPHYIEIW 824
P P AP S P QGP A+DGPPA EEP+Y E W
Sbjct: 344571 PGPPAPASPPVQGPGGSAQDGPPAPAPGSEEPYYSECW 344684
Score = 85.5 bits (210), Expect = 2e-14
Identities = 38/48 (79%), Positives = 45/48 (93%)
Frame = +3
Query: 488 ECASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKI 535
+ ASG++G +SQ+KTPHNPLDSSAPLMKKGKQRE+PKAKKPTSLKK+
Sbjct: 336516 DTASGKKGHHLSQVKTPHNPLDSSAPLMKKGKQREVPKAKKPTSLKKV 336659
Score = 62.0 bits (149), Expect = 2e-07
Identities = 36/50 (72%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Frame = +3
Query: 534 KIILKERQERKQ-RLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPE 582
KIILKERQERKQ RLQENAVSPA SD DGESGGD+ E A+ SG E
Sbjct: 337224 KIILKERQERKQQRLQENAVSPALASDAVPDGESGGDEAL-EPADPSGAE 337370
Score = 54.7 bits (130), Expect = 3e-05
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Frame = +1
Query: 540 RQERKQRLQENAVSPAF---TSDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDK 596
R+ R L+ V PA+ D G +GG + P S P +E +
Sbjct: 337858 REVRSGLLRPQPVCPAWGRLCPDSLLRGVAGGPEASP--------------CSAPMLEGR 337995
Query: 597 SEEPPGTELQRDTEASHLAPNHTTFPKIHSRRFRD 631
SEE P ELQ++ E HL PN PKIHSRRFR+
Sbjct: 337996 SEELPRAELQKEVEGCHLVPNGAGCPKIHSRRFRE 338100
>gi|472267499|gb|KB717158.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02452, whole genome
shotgun sequence
Length = 366617
Score = 112 bits (279), Expect = 2e-22
Identities = 53/87 (60%), Positives = 64/87 (73%)
Frame = +2
Query: 57 PPVTEQKIYTEDMAFGASTFPPQYLSSEITLHPYAYSPYTLDSTQNVYSVPGSQYLYNQP 116
P + QK+ TED+AFGAS F PQYLSSE+ LHP YSPY ++ +Q+ VPGSQY +P
Sbjct: 34637 PVLFRQKLCTEDVAFGASPFLPQYLSSELALHPCRYSPYPVECSQSGCPVPGSQYACGRP 34816
Query: 117 SCYRGFQTVKHRNENTCPLPQEMKALF 143
S YRGFQTVK R E CP+PQ+ KALF
Sbjct: 34817 SAYRGFQTVKPRGEQMCPVPQDSKALF 34897
Score = 107 bits (268), Expect = 3e-21
Identities = 55/92 (59%), Positives = 71/92 (77%), Gaps = 2/92 (2%)
Frame = +2
Query: 178 SHHLSIYAE-NSLKSDGYHKRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQGAENN-MSE 235
SH+ ++ +S+ +DGY KRTDRKS I+ K+ S SKPEFEFT LDFPELQG E++ +SE
Sbjct: 36365 SHNTYLFTPFDSVNTDGYPKRTDRKSGIVEKSGSASKPEFEFTRLDFPELQGPEHSEISE 36544
Query: 236 IQKQPKWGPVHSVSTDISLLREVVKPAAVLSK 267
+KQ KWGP+ S S D+SLLREVVKPA V ++
Sbjct: 36545 TEKQSKWGPLRSTSADLSLLREVVKPAVVTTE 36640
Score = 102 bits (254), Expect = 1e-19
Identities = 55/70 (78%), Positives = 60/70 (85%)
Frame = +2
Query: 294 ELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNK 353
ELSWTPMGYVVRQTLSTE SAAPKNVTSMINL+T+ASSAD K+VS+ E LSSDPSY K
Sbjct: 41357 ELSWTPMGYVVRQTLSTEQSAAPKNVTSMINLETVASSADSKSVSMSPPEVLSSDPSY-K 41533
Query: 354 EKHIIHPTQK 363
EKH IH +K
Sbjct: 41534 EKH-IHSAKK 41560
Score = 79.7 bits (195), Expect = 8e-13
Identities = 39/50 (78%), Positives = 41/50 (82%)
Frame = +3
Query: 12 EGIKLSADVKPFVPRFAGLNVAWLESSEACVFPSSAATYYPFVQEPPVTE 61
+G KLSADVKPFVP+FAGL VAW ESSEA VFPS AA YYP VQE PV E
Sbjct: 30072 QGFKLSADVKPFVPKFAGLGVAWSESSEARVFPSCAAAYYPCVQELPVPE 30221
Score = 59.3 bits (142), Expect = 1e-06
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +1
Query: 435 DNFKNNVKKSQLPVQLDLGGMLTALEKKQHSQHA 468
+NFKN+ KKSQ+PVQLDLGGML ALEKKQHSQ A
Sbjct: 46735 NNFKNSGKKSQIPVQLDLGGMLAALEKKQHSQSA 46836
Score = 56.6 bits (135), Expect = 8e-06
Identities = 26/34 (76%), Positives = 30/34 (88%)
Frame = +3
Query: 405 DAEEFPNLAVASERRDRIETPKFQSKQQPQDNFK 438
DAEEFPNLAVASERRDR+ +P FQS+QQPQ F+
Sbjct: 45375 DAEEFPNLAVASERRDRVASPNFQSQQQPQVIFR 45476
Score = 50.8 bits (120), Expect = 4e-04
Identities = 26/50 (52%), Positives = 37/50 (74%)
Frame = +2
Query: 156 QQKFDSERADGTISSEIKSARGSHHLSIYAENSLKSDGYHKRTDRKSRII 205
+QKFDS++ADG++SS+IKS RGSH +SI+A+ +LK DR S +I
Sbjct: 35138 EQKFDSKKADGSLSSDIKSGRGSHPVSIHADANLKPG----ENDRLSDVI 35275
Score = 47.0 bits (110), Expect = 0.006
Identities = 25/42 (59%), Positives = 26/42 (61%)
Frame = +3
Query: 363 KSKASQGSDLEQNEAXXXXXXXXXXXXXXYEVLTVQEPPRIE 404
+SKASQG D EQNEA YEVLTVQEPPRIE
Sbjct: 44034 ESKASQGGDPEQNEASRKHKKKKEKSKSKYEVLTVQEPPRIE 44159
Score = 40.4 bits (93), Expect = 0.56
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 796 LPTQG-PSCPAEDGPPALKEKEEPHYIEIWKKHLEAYSGCXXXXXXXXXXXXXQMMNLNL 854
LP++G P CP +L +EIW++HLEAYS C QMMNLNL
Sbjct: 78620 LPSRGCPDCPRV----SLSCATLSFLVEIWRRHLEAYSRCALELEDSLEASTSQMMNLNL 78787
>gi|472269286|gb|KB715371.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00665, whole genome
shotgun sequence
Length = 1170685
Score = 104 bits (260), Expect = 2e-20
Identities = 50/74 (67%), Positives = 59/74 (79%)
Frame = -2
Query: 632 YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVXXXXXXXXXXC 691
YC+Q+L KE+D CVT LL+ELV FQ+R+YQKDPV+AK +RRLV+GLREV C
Sbjct: 76068 YCNQVLCKEIDECVTLLLQELVSFQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKC 75889
Query: 692 VIISPNCEKIQSKG 705
VIISPNCEKIQSKG
Sbjct: 75888 VIISPNCEKIQSKG 75847
Score = 74.3 bits (181), Expect = 4e-11
Identities = 38/62 (61%), Positives = 47/62 (75%)
Frame = -2
Query: 705 GGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVE 764
GGLD+ L+ +I A EQ IPFVFAL RKALGR +NK VPVSVVGIF+Y GA+ + ++
Sbjct: 75138 GGLDEALYNVIAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGIFNYFGAEVRPKRIHS 74959
Query: 765 LT 766
LT
Sbjct: 74958 LT 74953
Score = 39.3 bits (90), Expect = 1.2
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = -2
Query: 442 KKSQLPVQLDLGGMLTALEKKQHSQHAKQ 470
KK++ PVQLDLG ML ALEK+Q + A+Q
Sbjct: 93738 KKNKTPVQLDLGDMLAALEKQQQAMKARQ 93652
Score = 36.6 bits (83), Expect = 8.1
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = -3
Query: 503 TPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKI 535
T + LD ++ KKGK++EI K K+PT+LKK+
Sbjct: 89795 TSFSSLDITSSKAKKGKEKEIAKLKRPTALKKV 89697
>gi|472267563|gb|KB717094.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02388, whole genome
shotgun sequence
Length = 402887
Score = 36.6 bits (83), Expect = 8.1
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1
Query: 786 GEPRPQAPPSLPTQGPSCPAEDGPPAL 812
GEP P A P P QGPS PA+ G P L
Sbjct: 354395 GEPPPPALPQAPRQGPSLPADSGGPPL 354315
>gi|472269699|gb|KB714990.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00284, whole genome
shotgun sequence
Length = 1719621
Score = 36.6 bits (83), Expect = 8.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +1
Query: 44 PSSAATYYPFVQEPPVTEQKIYTEDMAFGASTFPPQYLSSEITLHPYAYSP 94
P YYP++ PP T KI + G STF PQY + H P
Sbjct: 148069 PELIHAYYPYLLPPPATSNKIACK*YPLGPSTFCPQYAFCNASSHSSLLPP 148221
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.311 0.128 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,735,348,304
Number of Sequences: 16710
Number of extensions: 38486105
Number of successful extensions: 177289
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 799
Number of HSP's that attempted gapping in prelim test: 158281
Number of HSP's gapped (non-prelim): 52492
length of query: 854
length of database: 1,052,295,386
effective HSP length: 141
effective length of query: 713
effective length of database: 1,049,939,276
effective search space: 748606703788
effective search space used: 748606703788
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 82 (36.2 bits)