Command line: [exonerate -m p2g --showtargetgff -q ./PSTK.fa -t PSTK.carpeta/genomic.fa]
Hostname: [ws101071]
C4 Alignment:
------------
Query: SPP00000052_2.0 # Protein # Phosphoseryl-tRNA kinase (PSTK) # Human (Homo sapiens)
Target: gi|472269467|gb|KB715222.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00516, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 1258
Query range: 0 -> 293
Target range: 827354 -> 833729
1 : MetLysThrAlaGluAsnIleArgGlyThrGlySerAspGlyProArgLysArgGlyL : 20
|||||||||||||||:!! !||||||.!! !!|||!!:|||||||||:!!! !||||
MetLysThrAlaGluAspAlaArgGlyAlaArgSerGluGlyProArgGluIleGlyL
827355 : ATGAAGACCGCCGAGGACGCCAGAGGGGCGCGCAGCGAGGGACCGCGGGAGATAGGCC : 827412
21 : euCysValLeuCysGlyLeuProAlaAlaGlyLysSerThrPheAlaArgAlaLeuAl : 39
|||||:!!|||||||||||||||||||||||||||||||||!!.||||||||||||::
euCysLeuLeuCysGlyLeuProAlaAlaGlyLysSerThrLeuAlaArgAlaLeuSe
827413 : TCTGCCTTCTCTGCGGCCTCCCGGCAGCAGGAAAATCGACCTTGGCGCGGGCCCTCAG : 827469
40 : aHisArgLeuGlnGlnGluGlnGlyTrpAlaIleGlyValValAlaTyrAspAspVal : 58
!|||||||||!:!||||||!:!|||||||||:!!|||||||||.!!||||||||||||
rHisArgLeuArgGlnGluArgGlyTrpAlaValGlyValValThrTyrAspAspVal
827470 : CCACCGGCTACGGCAGGAGCGGGGCTGGGCCGTCGGCGTCGTCACCTATGATGACGTC : 827526
59 : MetProAspAlaPheLeuAlaGlyAlaArgAlaArgProAla >>>> Target In : 73
||||||||||||||||||! !! !|||!!!||||||||| ! 2004
MetProAspAlaPheLeuGluGluAlaSerAlaArgProLeu++
827527 : ATGCCGGACGCGTTCCTGGAGGAGGCGAGCGCGCGGCCATTGgt.............. : 827573
74 : tron 1 >>>> ProSerGlnTrpLysLeuLeuArgGlnGluLeuLeuLysTyrLeu : 87
bp |||||||||||||||||||||||||||||||||||||||||||||
++ProSerGlnTrpLysLeuLeuArgGlnGluLeuLeuLysTyrLeu
827574 : ...........agCCATCCCAGTGGAAATTGCTTCGACAGGAACTGTTGAAATACCTA : 829617
88 : GluTyrPheLeuMetAlaValIleAsnGlyCysGlnMetSerValProProAsnArgT : 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GluTyrPheLeuMetAlaValIleAsnGlyCysGlnMetSerValProProAsnArgT
829618 : GAATACTTCTTGATGGCTGTCATTAACGGGTGTCAGATGTCTGTCCCACCCAACAGGA : 829677
108 : hrGluAlaMetTrpGluAspPheIleThrCysLeuLysAspGlnAspLeuIlePheSe : 126
||! !|||:!!|||||||||||||||!:!||||||||||||||||||||||||! !||
hrAlaAlaLeuTrpGluAspPheIleSerCysLeuLysAspGlnAspLeuIleSerSe
829678 : CTGCAGCCCTGTGGGAGGATTTTATAAGCTGCTTAAAGGATCAAGATCTGATATCTTC : 829734
127 : rAlaAlaPheGluAlaGlnSerCysTyrLeuLeuThrLysThrAlaValSerArgPro : 145
|||||||.!.|||.!!||||||||||||||||||||||||! !|||||||||||||||
rAlaAlaLeuGluThrGlnSerCysTyrLeuLeuThrLysIleAlaValSerArgPro
829735 : TGCGGCGCTGGAGACCCAGTCTTGCTACCTCTTAACGAAGATTGCTGTTTCTAGACCT : 829791
146 : LeuPheLeuValLeuAspAspAsnPheTyrTyrGlnSerMetArgTyrGluValTyrG : 165
|||||||||:!!||||||||||||||||||||||||||||||||||||||||||||||
LeuPheLeuIleLeuAspAspAsnPheTyrTyrGlnSerMetArgTyrGluValTyrG
829792 : TTGTTTTTGATTTTAGATGACAACTTTTATTATCAAAGTATGAGATACGAAGTCTACC : 829851
166 : lnLeuAlaArgLys{T} >>>> Target Intron 2 >>>> {yr}SerLeuGl : 173
||||||||||||||{|} 238 bp {||}||||||||
lnLeuAlaArgLys{T}++ ++{yr}SerLeuGl
829852 : AACTGGCTCGGAAA{T}gt.........................ag{AT}TCATTAGG : 830113
174 : yPheCysGlnLeuPheLeuAspCysProLeuGluThrCysLeuGlnArgAsnGlyGln : 192
||||||||||||||||||||||||| !!||||||||||||||||||||||||||||||
yPheCysGlnLeuPheLeuAspCysSerLeuGluThrCysLeuGlnArgAsnGlyGln
830114 : CTTTTGCCAGCTCTTTTTAGATTGTTCTCTCGAGACCTGTTTACAGAGGAATGGCCAG : 830170
193 : ArgProGlnAlaLeuProProGluThrIleHisLeuMetGlyArgLysLeuGluLysP : 212
||| !||| !!|||||| !!||||||||||||||||||!.!||||||:!!|||||||
ArgCysGlnProLeuProAlaGluThrIleHisLeuMetAlaArgLysIleGluLysP
830171 : AGATGCCAGCCACTGCCTGCCGAGACCATTCACCTGATGGCAAGAAAGATAGAGAAGC : 830230
213 : roAsnProGluLysAsnAlaTrpGluHisAsnSerLeuThrIleProSerProAlaCy : 231
||||||||! !|||||||||||||||||||||||||||||||||! !||| !! !!||
roAsnProGlyLysAsnAlaTrpGluHisAsnSerLeuThrIleGlnSerThrProCy
830231 : CCAACCCTGGGAAAAATGCTTGGGAACACAACAGCCTCACAATTCAGAGTACCCCGTG : 830287
232 : sAlaSerGluAla{Se} >>>> Target Intron 3 >>>> {r}LeuGluVal : 239
|:!!|||||||||{||} 2759 bp {|}|||:!!:!!
sSerSerGluAla{Se}++ ++{r}LeuLysLeu
830288 : CTCTTCTGAGGCC{AG}gt.........................ag{C}CTGAAGTTG : 833070
240 : ThrAspLeuLeuLeuThrAlaLeuGluAsnProValLysTyrAlaGluAspAsnMetG : 259
|||||||||||||||||||||||||||||||||||||||||| !|||||||||:!!|
ThrAspLeuLeuLeuThrAlaLeuGluAsnProValLysTyrIleGluAspAsnValG
833071 : ACTGATTTATTGCTTACTGCTTTGGAAAATCCAGTAAAATATATTGAGGACAATGTGG : 833130
260 : luGlnLys >>>> Target Intron 4 >>>> AspThrAspArgIleIleCys : 268
|||||||| 495 bp !!::!!|||||||||||||||
luGlnLys++ ++GluSerAspArgIleIleCys
833131 : AACAAAAGgt.........................agGAATCAGACAGAATTATTTGT : 833652
269 : SerThrAsnIleLeuHisLysThrAspGlnThrLeuArgArgIleValSerGlnThrM : 288
|||.!!|||:!!||||||:!!.!!||||||||||||||||||||||||||||||||||
SerAlaAsnValLeuHisGlnAlaAspGlnThrLeuArgArgIleValSerGlnThrM
833653 : TCAGCTAACGTTCTGCATCAAGCTGACCAGACGCTCCGAAGGATTGTCTCTCAGACGA : 833712
289 : etLysGluAlaLysGly : 293
|||||||||||||||||
etLysGluAlaLysGly
833713 : TGAAGGAAGCAAAAGGT : 833729
vulgar: SPP00000052_2.0 0 293 . gi|472269467|gb|KB715222.1| 827354 833729 + 1258 M 72 216 5 0 2 I 0 2000 3 0 2 M 97 291 S 0 1 5 0 2 I 0 234 3 0 2 S 1 2 M 65 195 S 0 2 5 0 2 I 0 2755 3 0 2 S 1 1 M 25 75 5 0 2 I 0 491 3 0 2 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local gene 827355 833729 1258 + . gene_id 1 ; sequence SPP00000052_2.0 ; gene_orientation +
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local cds 827355 827570 . + .
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local exon 827355 827570 . + . insertions 0 ; deletions 0
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local splice5 827571 827572 . + . intron_id 1 ; splice_site "GT"
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local intron 827571 829574 . + . intron_id 1
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local splice3 829573 829574 . + . intron_id 0 ; splice_site "AG"
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local cds 829575 829866 . + .
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local exon 829575 829866 . + . insertions 0 ; deletions 0
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local splice5 829867 829868 . + . intron_id 2 ; splice_site "GT"
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local intron 829867 830104 . + . intron_id 2
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local splice3 830103 830104 . + . intron_id 1 ; splice_site "AG"
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local cds 830105 830303 . + .
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local exon 830105 830303 . + . insertions 0 ; deletions 0
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local splice5 830304 830305 . + . intron_id 3 ; splice_site "GT"
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local intron 830304 833062 . + . intron_id 3
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local splice3 833061 833062 . + . intron_id 2 ; splice_site "AG"
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local cds 833063 833138 . + .
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local exon 833063 833138 . + . insertions 0 ; deletions 0
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local splice5 833139 833140 . + . intron_id 4 ; splice_site "GT"
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local intron 833139 833633 . + . intron_id 4
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local splice3 833632 833633 . + . intron_id 3 ; splice_site "AG"
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local cds 833634 833729 . + .
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local exon 833634 833729 . + . insertions 0 ; deletions 0
gi|472269467|gb|KB715222.1| exonerate:protein2genome:local similarity 827355 833729 1258 + . alignment_id 1 ; Query SPP00000052_2.0 ; Align 827355 1 216 ; Align 829575 73 291 ; Align 830107 171 195 ; Align 833064 237 75 ; Align 833634 262 96
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis